Wall clock time and date at job start Wed Apr 1 2020 01:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40446 * 126.82173 * 2 1 4 4 C 1.30714 * 106.78744 * 180.25925 * 3 2 1 5 5 N 1.33238 * 108.94967 * 359.74624 * 4 3 2 6 6 C 1.30835 * 109.82726 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.95864 * 179.97438 * 6 5 4 8 8 O 1.42896 * 113.27946 * 166.95803 * 7 6 5 9 9 C 1.53497 * 114.20778 * 300.02242 * 7 6 5 10 10 N 1.47066 * 87.98204 * 87.71945 * 9 7 6 11 11 C 1.34778 * 136.05673 * 206.86178 * 10 9 7 12 12 O 1.21588 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00345 * 180.02562 * 11 10 9 14 14 C 1.39237 * 120.00219 * 175.71221 * 13 11 10 15 15 C 1.39479 * 119.83503 * 215.02215 * 14 13 11 16 16 C 1.36373 * 120.17129 * 179.75875 * 15 14 13 17 17 C 1.40863 * 119.82848 * 0.53318 * 16 15 14 18 18 C 1.41157 * 120.16671 * 179.69670 * 17 16 15 19 19 H 1.07998 * 119.99751 * 214.80633 * 18 17 16 20 20 C 1.39892 * 119.99818 * 34.80263 * 18 17 16 21 21 N 1.30881 * 120.00259 * 355.56478 * 20 18 17 22 22 Si 1.86803 * 119.99860 * 175.55630 * 20 18 17 23 23 H 1.48505 * 109.46764 * 60.00435 * 22 20 18 24 24 H 1.48501 * 109.47050 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47636 * 300.00416 * 22 20 18 26 26 C 1.40868 * 119.67120 * 359.72225 * 17 16 15 27 27 C 1.36376 * 119.83113 * 359.97438 * 26 17 16 28 28 C 1.47062 * 87.89014 * 27.11852 * 10 9 7 29 29 H 1.08993 * 109.47308 * 270.17120 * 1 2 3 30 30 H 1.09008 * 109.47017 * 30.17286 * 1 2 3 31 31 H 1.08998 * 109.47379 * 150.16979 * 1 2 3 32 32 H 1.08000 * 125.52339 * 179.79013 * 4 3 2 33 33 H 0.96698 * 114.00078 * 313.06839 * 8 7 6 34 34 H 1.08997 * 113.46691 * 332.94279 * 9 7 6 35 35 H 1.09000 * 113.46825 * 202.49699 * 9 7 6 36 36 H 0.96999 * 119.99882 * 355.70949 * 13 11 10 37 37 H 1.08000 * 119.91334 * 359.97438 * 15 14 13 38 38 H 1.08002 * 120.08351 * 180.25330 * 16 15 14 39 39 H 0.96999 * 120.00086 * 179.97438 * 21 20 18 40 40 H 1.08008 * 120.08740 * 179.97438 * 26 17 16 41 41 H 1.08000 * 119.92113 * 180.02562 * 27 26 17 42 42 H 1.09003 * 113.46431 * 87.65498 * 28 10 9 43 43 H 1.08995 * 113.47177 * 218.10135 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.3068 1.1243 0.0000 4 6 3.5348 0.6765 -0.0057 5 7 3.5096 -0.6557 -0.0036 6 6 2.2707 -1.0761 0.0028 7 6 1.8246 -2.5156 0.0065 8 8 0.4375 -2.6762 0.3096 9 6 2.3016 -3.3254 -1.2072 10 7 3.5308 -3.6262 -0.4579 11 6 4.8079 -3.9249 -0.7681 12 8 5.1512 -3.9907 -1.9327 13 7 5.7046 -4.1505 0.2124 14 6 7.0008 -4.5462 -0.1070 15 6 7.6789 -5.4377 0.7241 16 6 8.9468 -5.8337 0.4152 17 6 9.5757 -5.3311 -0.7407 18 6 10.8903 -5.7312 -1.0637 19 1 11.5681 -5.0320 -1.5308 20 6 11.3150 -7.0332 -0.7789 21 7 10.5241 -7.8536 -0.1352 22 14 13.0111 -7.6012 -1.3176 23 1 14.0445 -6.7408 -0.6874 24 1 13.2178 -9.0105 -0.8976 25 1 13.1198 -7.5036 -2.7954 26 6 8.8865 -4.4268 -1.5723 27 6 7.6166 -4.0449 -1.2537 28 6 2.7517 -3.4643 0.7789 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8885 -0.5166 31 1 -0.3634 -0.8915 -0.5112 32 1 4.4255 1.2873 -0.0105 33 1 0.1402 -2.1648 1.0745 34 1 2.4725 -2.7167 -2.0951 35 1 1.6903 -4.2049 -1.4096 36 1 5.4470 -4.0372 1.1407 37 1 7.1972 -5.8182 1.6128 38 1 9.4690 -6.5272 1.0576 39 1 10.8185 -8.7565 0.0620 40 1 9.3624 -4.0370 -2.4600 41 1 7.0867 -3.3520 -1.8905 42 1 2.2603 -4.3809 1.1054 43 1 3.3052 -2.9739 1.5795 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364068340.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:46 Heat of formation + Delta-G solvation = 104.273173 kcal Electronic energy + Delta-G solvation = -29190.188579 eV Core-core repulsion = 25046.946037 eV Total energy + Delta-G solvation = -4143.242542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.67352 -40.61845 -38.95661 -37.19841 -36.18636 -34.29327 -34.17217 -32.81897 -31.73663 -29.65019 -29.35989 -28.28491 -27.51842 -26.47576 -24.79343 -23.56923 -22.33320 -21.55144 -20.92719 -20.35744 -19.17496 -18.42463 -17.84812 -17.19948 -16.83791 -16.51957 -16.27080 -15.54346 -15.50204 -15.10602 -14.95185 -14.47254 -14.12388 -13.91372 -13.77443 -13.66103 -13.36030 -13.23088 -12.89520 -12.69431 -12.59688 -12.38175 -12.02926 -11.67994 -11.59911 -11.26924 -11.07038 -10.95979 -10.83416 -10.65861 -10.28118 -10.09637 -10.03806 -9.83746 -9.47350 -9.38002 -9.17350 -8.80909 -8.67218 -7.44812 -6.73981 -6.53361 -4.25280 1.11394 1.82212 2.43092 2.58346 2.78668 3.13635 3.15559 3.18264 3.19602 3.23602 3.41097 3.76503 3.94530 3.99759 4.04736 4.19720 4.44554 4.57027 4.69828 4.79286 4.93529 5.04296 5.09751 5.12871 5.30815 5.40364 5.58067 5.74573 5.88338 6.07944 6.27763 6.28957 6.54942 6.67064 6.85996 7.00125 7.14352 7.26335 7.36589 7.51913 7.74645 7.75942 7.97410 8.03548 8.17315 8.39961 8.52173 8.72352 9.00908 9.01742 9.17893 10.37926 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027132 B = 0.002217 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.760546 B =12624.393833 C =13107.687869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.374 5.374 3 N -0.316 5.316 4 C 0.205 3.795 5 N -0.506 5.506 6 C 0.264 3.736 7 C 0.160 3.840 8 O -0.528 6.528 9 C 0.158 3.842 10 N -0.651 5.651 11 C 0.743 3.257 12 O -0.570 6.570 13 N -0.659 5.659 14 C 0.027 3.973 15 C -0.123 4.123 16 C -0.140 4.140 17 C 0.097 3.903 18 C -0.462 4.462 19 H 0.074 0.926 20 C 0.069 3.931 21 N -0.815 5.815 22 Si 0.915 3.085 23 H -0.267 1.267 24 H -0.280 1.280 25 H -0.267 1.267 26 C -0.203 4.203 27 C -0.086 4.086 28 C 0.098 3.902 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.221 0.779 33 H 0.383 0.617 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.391 0.609 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.277 0.723 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.102 0.898 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.129 10.987 5.912 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.166 5.166 3 N -0.144 5.144 4 C -0.098 4.098 5 N -0.233 5.233 6 C -0.014 4.014 7 C 0.115 3.885 8 O -0.333 6.333 9 C 0.032 3.968 10 N -0.394 5.394 11 C 0.447 3.553 12 O -0.446 6.446 13 N -0.303 5.303 14 C -0.065 4.065 15 C -0.144 4.144 16 C -0.160 4.160 17 C 0.095 3.905 18 C -0.493 4.493 19 H 0.093 0.907 20 C -0.145 4.145 21 N -0.442 5.442 22 Si 0.740 3.260 23 H -0.191 1.191 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.223 4.223 27 C -0.106 4.106 28 C -0.028 4.028 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.128 0.872 32 H 0.237 0.763 33 H 0.233 0.767 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.224 0.776 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.127 0.873 42 H 0.120 0.880 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -21.610 10.816 4.560 24.592 hybrid contribution 0.262 0.064 0.739 0.787 sum -21.348 10.880 5.299 24.540 Atomic orbital electron populations 1.22298 0.73605 1.06243 1.04037 1.50316 1.08062 1.03613 1.54586 1.78100 1.02306 1.07670 1.26328 1.26105 0.95784 0.90195 0.97716 1.70531 1.18668 1.11355 1.22696 1.23893 0.86965 0.91274 0.99220 1.20868 0.81586 0.85105 1.00977 1.86651 1.22012 1.71775 1.52831 1.22614 0.82924 0.97450 0.93771 1.47938 1.06230 1.76453 1.08791 1.15001 0.77620 0.77501 0.85134 1.90925 1.76821 1.58778 1.18091 1.41939 1.10026 1.70846 1.07535 1.17071 0.83310 1.04706 1.01450 1.20274 0.96770 0.97982 0.99335 1.21160 0.94309 1.02537 0.98033 1.17704 0.93174 0.90023 0.89603 1.19436 0.97523 0.96817 1.35536 0.90750 1.25855 0.98594 0.96783 0.93279 1.69761 1.36062 1.06712 1.31697 0.86269 0.81957 0.77850 0.79938 1.19135 1.20527 1.19166 1.20810 0.94718 1.06231 1.00566 1.20440 0.94460 0.99384 0.96310 1.23468 0.90830 0.97809 0.90690 0.90103 0.88819 0.87199 0.76267 0.76717 0.89606 0.87889 0.77612 0.89216 0.85057 0.91228 0.88664 0.87299 0.88011 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.32 9.90 59.85 0.59 0.92 16 2 N -0.37 -3.37 4.04 -65.09 -0.26 -3.63 16 3 N -0.32 -3.58 12.70 29.29 0.37 -3.21 16 4 C 0.20 2.37 13.03 -91.81 -1.20 1.18 16 5 N -0.51 -6.65 10.82 -11.97 -0.13 -6.78 16 6 C 0.26 2.73 6.96 -155.70 -1.08 1.65 16 7 C 0.16 1.32 2.04 -91.25 -0.19 1.13 16 8 O -0.53 -2.60 11.36 -35.23 -0.40 -3.00 16 9 C 0.16 1.72 8.03 -8.50 -0.07 1.65 16 10 N -0.65 -9.02 3.40 -191.00 -0.65 -9.67 16 11 C 0.74 14.28 8.62 -86.92 -0.75 13.53 16 12 O -0.57 -13.50 14.53 5.29 0.08 -13.42 16 13 N -0.66 -12.48 5.31 -14.10 -0.07 -12.56 16 14 C 0.03 0.63 6.31 -83.57 -0.53 0.10 16 15 C -0.12 -2.88 9.90 -39.79 -0.39 -3.28 16 16 C -0.14 -3.69 8.61 -39.26 -0.34 -4.03 16 17 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 18 C -0.46 -12.62 9.02 -37.86 -0.34 -12.96 16 19 H 0.07 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.80 5.42 -17.34 -0.09 1.70 16 21 N -0.81 -21.63 10.60 55.54 0.59 -21.05 16 22 Si 0.91 19.46 29.56 -169.99 -5.03 14.43 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.20 -5.33 9.74 -39.26 -0.38 -5.71 16 27 C -0.09 -2.15 8.61 -39.79 -0.34 -2.50 16 28 C 0.10 0.89 7.61 -8.50 -0.06 0.82 16 29 H 0.08 0.13 7.98 -51.93 -0.41 -0.28 16 30 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 31 H 0.11 0.31 6.26 -51.93 -0.33 -0.01 16 32 H 0.22 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.38 0.56 7.53 45.56 0.34 0.91 16 34 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.39 6.06 8.54 -40.82 -0.35 5.71 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 38 H 0.13 3.55 6.13 -52.49 -0.32 3.23 16 39 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 40 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16 41 H 0.11 2.77 6.22 -52.49 -0.33 2.44 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -36.35 366.64 -10.07 -46.42 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.32 Total: 10.64 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -5.77 Total: -3.71 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.16 Total: -56.90 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.32 Total: -16.42 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.35 -10.07 -46.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364068340.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.694 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds