Wall clock time and date at job start Wed Apr 1 2020 01:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34784 * 119.86723 * 2 1 4 4 N 1.30481 * 121.69956 * 179.70432 * 3 2 1 5 5 C 1.34158 * 121.32002 * 0.56673 * 4 3 2 6 6 N 1.38525 * 120.21988 * 179.69297 * 5 4 3 7 7 C 1.34776 * 120.00144 * 0.02984 * 6 5 4 8 8 O 1.21576 * 119.99857 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00582 * 179.97438 * 7 6 5 10 10 C 1.46496 * 119.99594 * 359.97438 * 9 7 6 11 11 C 1.50705 * 109.47235 * 90.00209 * 10 9 7 12 12 H 1.07993 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00152 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00304 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46670 * 90.00282 * 15 13 11 17 17 H 1.48498 * 109.47320 * 210.00325 * 15 13 11 18 18 H 1.48499 * 109.47223 * 330.00621 * 15 13 11 19 19 C 1.46494 * 120.00433 * 179.97438 * 9 7 6 20 20 C 1.50707 * 109.47119 * 89.99806 * 19 9 7 21 21 C 1.38228 * 119.61730 * 94.99888 * 20 19 9 22 22 C 1.38625 * 119.15846 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.42346 * 359.97438 * 22 21 20 24 24 C 1.38180 * 119.16131 * 0.02562 * 23 22 21 25 25 N 1.31858 * 119.61604 * 274.72900 * 20 19 9 26 26 C 1.38328 * 119.56323 * 359.71960 * 5 4 3 27 27 C 1.34949 * 119.86481 * 180.26243 * 2 1 3 28 28 O 1.22053 * 120.64522 * 0.02846 * 27 2 1 29 29 H 1.09002 * 109.47391 * 269.73224 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.73280 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.73407 * 1 2 3 32 32 H 1.07996 * 119.14760 * 359.97438 * 3 2 1 33 33 H 0.97002 * 120.00358 * 180.02562 * 6 5 4 34 34 H 1.08999 * 109.47473 * 210.00511 * 10 9 7 35 35 H 1.08997 * 109.47479 * 330.00210 * 10 9 7 36 36 H 0.96995 * 120.00509 * 179.97438 * 14 13 11 37 37 H 1.08995 * 109.47483 * 209.99757 * 19 9 7 38 38 H 1.09004 * 109.46895 * 330.00377 * 19 9 7 39 39 H 1.08001 * 120.41507 * 359.96100 * 21 20 19 40 40 H 1.07997 * 120.78706 * 180.02562 * 22 21 20 41 41 H 1.08003 * 120.41864 * 180.02562 * 23 22 21 42 42 H 1.08000 * 119.61548 * 179.97438 * 24 23 22 43 43 H 1.07998 * 120.78450 * 179.97438 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1362 1.1688 0.0000 4 7 3.4403 1.2105 0.0057 5 6 4.1740 0.0874 0.0006 6 7 5.5575 0.1583 0.0004 7 6 6.1707 1.3584 0.0061 8 8 5.5098 2.3788 0.0109 9 7 7.5167 1.4275 0.0065 10 6 8.3132 0.1980 0.0013 11 6 8.5865 -0.2176 -1.4213 12 1 8.2047 0.3747 -2.2397 13 6 9.3239 -1.3539 -1.6781 14 7 9.7885 -2.0755 -0.6815 15 14 9.6620 -1.8693 -3.4414 16 1 10.9264 -1.2441 -3.9060 17 1 9.7864 -3.3475 -3.5099 18 1 8.5422 -1.4260 -4.3101 19 6 8.1833 2.7320 0.0121 20 6 8.4117 3.1733 1.4349 21 6 9.6262 2.9167 2.0430 22 6 9.8263 3.3273 3.3519 23 6 8.7929 3.9841 4.0029 24 6 7.6063 4.2055 3.3303 25 7 7.4527 3.8045 2.0833 26 6 3.5400 -1.1420 -0.0052 27 6 2.1370 -1.1703 -0.0054 28 8 1.5361 -2.2327 -0.0107 29 1 -0.3634 -0.0048 1.0276 30 1 -0.3633 -0.8876 -0.5180 31 1 -0.3633 0.8924 -0.5097 32 1 1.5802 2.0947 -0.0004 33 1 6.0849 -0.6558 -0.0037 34 1 9.2576 0.3746 0.5160 35 1 7.7638 -0.5930 0.5117 36 1 10.3070 -2.8751 -0.8621 37 1 9.1412 2.6529 -0.5020 38 1 7.5561 3.4627 -0.4987 39 1 10.4092 2.4027 1.5054 40 1 10.7649 3.1409 3.8524 41 1 8.9140 4.3184 5.0227 42 1 6.7965 4.7159 3.8304 43 1 4.1112 -2.0585 -0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413596691.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:55 Heat of formation + Delta-G solvation = 44.903194 kcal Electronic energy + Delta-G solvation = -29602.959197 eV Core-core repulsion = 25457.142179 eV Total energy + Delta-G solvation = -4145.817018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57421 -40.16235 -39.45412 -37.35032 -35.96152 -34.98656 -33.50397 -32.83470 -32.19567 -31.35521 -30.28126 -27.78241 -27.55629 -26.03485 -24.54136 -23.47289 -23.21951 -22.74138 -21.72166 -19.99067 -18.32949 -17.55774 -17.05057 -16.91658 -16.71979 -16.28121 -16.22755 -15.90016 -15.50698 -15.33735 -14.77460 -14.62288 -14.40256 -14.11519 -13.60725 -13.38891 -13.25415 -13.20910 -13.01424 -12.89118 -12.75530 -12.56793 -12.39402 -11.80643 -11.59127 -11.36827 -11.04355 -10.95995 -10.83683 -10.32958 -10.13587 -9.94695 -9.89996 -9.66568 -9.14241 -9.09938 -9.07407 -8.81008 -8.66164 -8.00628 -7.78108 -6.29283 -4.38841 0.85026 1.26909 1.50443 2.14818 2.57394 3.01355 3.17896 3.26310 3.30118 3.61623 3.91639 4.11134 4.19733 4.25410 4.55110 4.60346 4.66962 4.87191 4.97414 5.01764 5.04017 5.09496 5.23430 5.24920 5.35035 5.43733 5.66362 5.75445 5.77482 5.85480 5.96846 6.17961 6.21629 6.32913 6.36533 6.54422 6.71904 6.90042 6.93914 6.96490 7.13104 7.47456 7.65867 7.89616 7.97959 8.09839 8.30243 8.44599 8.72466 9.17985 9.32138 10.76682 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007023 B = 0.004523 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3985.782971 B = 6189.369650 C = 9429.247697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.539 5.539 3 C 0.386 3.614 4 N -0.506 5.506 5 C 0.450 3.550 6 N -0.650 5.650 7 C 0.697 3.303 8 O -0.533 6.533 9 N -0.604 5.604 10 C 0.237 3.763 11 C -0.545 4.545 12 H 0.064 0.936 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.186 3.814 20 C 0.117 3.883 21 C -0.156 4.156 22 C -0.081 4.081 23 C -0.181 4.181 24 C 0.092 3.908 25 N -0.455 5.455 26 C -0.371 4.371 27 C 0.534 3.466 28 O -0.558 6.558 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.429 0.571 34 H 0.042 0.958 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.149 0.851 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.195 9.917 6.159 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.259 5.259 3 C 0.099 3.901 4 N -0.230 5.230 5 C 0.228 3.772 6 N -0.296 5.296 7 C 0.398 3.602 8 O -0.405 6.405 9 N -0.339 5.339 10 C 0.117 3.883 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.526 5.526 15 Si 0.725 3.275 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 C 0.062 3.938 20 C -0.022 4.022 21 C -0.176 4.176 22 C -0.108 4.108 23 C -0.202 4.202 24 C -0.066 4.066 25 N -0.164 5.164 26 C -0.402 4.402 27 C 0.338 3.662 28 O -0.440 6.440 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.222 0.778 33 H 0.270 0.730 34 H 0.060 0.940 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.155 0.845 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.167 0.833 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.979 10.641 5.764 15.069 hybrid contribution 1.247 -1.816 -0.312 2.225 sum -7.732 8.825 5.453 12.938 Atomic orbital electron populations 1.22096 0.77358 1.04923 1.03814 1.46788 1.10221 1.08479 1.60414 1.24986 0.88753 0.89768 0.86583 1.68543 1.03151 1.28110 1.23227 1.18435 0.84363 0.88948 0.85407 1.43062 1.03249 1.11169 1.72089 1.15919 0.82719 0.83009 0.78563 1.90988 1.63510 1.32014 1.54013 1.47359 1.03414 1.07932 1.75172 1.19409 0.91398 0.79823 0.97620 1.21520 1.34836 1.09899 0.92142 0.91742 1.24949 0.95043 0.95963 0.97648 1.69913 1.35355 1.16320 1.31045 0.86488 0.78876 0.77805 0.84318 1.20414 1.21010 1.19711 1.20030 0.98980 0.85162 0.89673 1.21943 0.89175 0.93239 0.97851 1.22128 0.99053 1.00550 0.95865 1.21543 0.98987 0.95702 0.94525 1.22097 0.95234 1.01642 1.01192 1.22759 0.96241 0.96761 0.90820 1.67661 1.31419 1.08784 1.08535 1.22181 0.93192 0.98139 1.26686 1.16591 0.88197 0.82794 0.78659 1.90915 1.70340 1.28351 1.54368 0.90650 0.88948 0.89531 0.77817 0.72951 0.94043 0.95412 0.92328 0.88443 0.88835 0.84453 0.85161 0.85376 0.83326 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.47 10.39 59.85 0.62 1.09 16 2 N -0.54 -6.61 2.97 -128.82 -0.38 -6.99 16 3 C 0.39 4.56 11.46 -90.63 -1.04 3.52 16 4 N -0.51 -8.53 7.94 -13.48 -0.11 -8.64 16 5 C 0.45 8.17 7.43 -154.26 -1.15 7.03 16 6 N -0.65 -12.72 5.23 -15.81 -0.08 -12.80 16 7 C 0.70 14.69 8.24 -86.92 -0.72 13.97 16 8 O -0.53 -11.94 14.17 5.30 0.08 -11.86 16 9 N -0.60 -12.27 2.44 -182.19 -0.44 -12.72 16 10 C 0.24 5.27 4.93 -5.19 -0.03 5.25 16 11 C -0.55 -13.33 9.39 -34.44 -0.32 -13.66 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -23.29 13.29 55.43 0.74 -22.55 16 15 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 16 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C 0.19 3.35 5.71 -5.19 -0.03 3.32 16 20 C 0.12 1.99 6.36 -82.58 -0.53 1.47 16 21 C -0.16 -2.30 9.72 -39.44 -0.38 -2.68 16 22 C -0.08 -1.02 10.18 -39.28 -0.40 -1.42 16 23 C -0.18 -2.18 10.11 -39.44 -0.40 -2.58 16 24 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 25 N -0.46 -7.96 10.27 -9.47 -0.10 -8.06 16 26 C -0.37 -6.46 9.94 -38.76 -0.39 -6.85 16 27 C 0.53 8.94 7.42 -15.40 -0.11 8.83 16 28 O -0.56 -10.84 16.76 4.87 0.08 -10.76 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.84 7.44 -51.93 -0.39 0.46 16 31 H 0.09 0.35 8.00 -51.93 -0.42 -0.06 16 32 H 0.21 1.33 8.01 -52.49 -0.42 0.91 16 33 H 0.43 8.34 6.43 -40.82 -0.26 8.07 16 34 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.03 0.65 6.36 -51.93 -0.33 0.31 16 36 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.10 1.61 7.97 -51.93 -0.41 1.19 16 38 H 0.09 1.73 7.42 -51.93 -0.39 1.35 16 39 H 0.14 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 42 H 0.15 1.70 8.06 -52.49 -0.42 1.27 16 43 H 0.15 2.61 8.06 -52.49 -0.42 2.19 16 LS Contribution 376.09 15.07 5.67 5.67 Total: -1.00 -34.39 376.09 -9.85 -44.24 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -5.12 Total: 9.56 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: -5.16 Total: 19.99 kcal Atomic # 7 Polarization: -71.38 SS G_CDS: -0.38 Total: -71.76 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.39 -9.85 -44.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413596691.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.140 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds