Wall clock time and date at job start Wed Apr 1 2020 01:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46501 * 120.00288 * 2 1 4 4 C 1.50708 * 109.46766 * 275.84234 * 3 2 1 5 5 H 1.08001 * 119.99884 * 5.05167 * 4 3 2 6 6 C 1.37872 * 120.00240 * 185.04987 * 4 3 2 7 7 N 1.31504 * 120.00216 * 180.02562 * 6 4 3 8 8 Si 1.86812 * 119.99751 * 0.02562 * 6 4 3 9 9 H 1.48489 * 109.46894 * 89.99891 * 8 6 4 10 10 H 1.48499 * 109.46839 * 210.00359 * 8 6 4 11 11 H 1.48494 * 109.46865 * 329.99733 * 8 6 4 12 12 S 1.65604 * 119.99894 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40140 * 160.30896 * 12 2 1 14 14 O 1.42102 * 106.39876 * 27.38684 * 12 2 1 15 15 N 1.65605 * 107.21890 * 273.84887 * 12 2 1 16 16 C 1.46501 * 119.99997 * 63.37929 * 15 12 2 17 17 C 1.52999 * 109.47300 * 162.91386 * 16 15 12 18 18 H 1.09008 * 109.46792 * 55.00254 * 17 16 15 19 19 C 1.52992 * 109.47227 * 295.00135 * 17 16 15 20 20 O 1.42909 * 109.47443 * 64.99666 * 19 17 16 21 21 C 1.52997 * 109.47299 * 174.99761 * 17 16 15 22 22 C 1.50700 * 109.47260 * 185.00270 * 21 17 16 23 23 C 1.38663 * 120.41978 * 90.00057 * 22 21 17 24 24 C 1.38629 * 118.42382 * 180.02562 * 23 22 21 25 25 C 1.38227 * 119.15943 * 359.97438 * 24 23 22 26 26 N 1.31862 * 120.76480 * 359.97438 * 25 24 23 27 27 C 1.31885 * 121.72070 * 0.05012 * 26 25 24 28 28 H 1.09003 * 109.46981 * 270.00852 * 1 2 3 29 29 H 1.08999 * 109.46927 * 30.00485 * 1 2 3 30 30 H 1.08993 * 109.47467 * 150.00214 * 1 2 3 31 31 H 1.08992 * 109.47237 * 35.83713 * 3 2 1 32 32 H 1.09001 * 109.47098 * 155.84781 * 3 2 1 33 33 H 0.97010 * 120.00005 * 179.97438 * 7 6 4 34 34 H 0.96993 * 119.99859 * 243.38034 * 15 12 2 35 35 H 1.09005 * 109.46924 * 42.91221 * 16 15 12 36 36 H 1.09008 * 109.46961 * 282.91771 * 16 15 12 37 37 H 1.08997 * 109.47573 * 184.99568 * 19 17 16 38 38 H 1.09004 * 109.47281 * 305.00061 * 19 17 16 39 39 H 0.96696 * 113.99908 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.47138 * 64.99902 * 21 17 16 41 41 H 1.08997 * 109.47280 * 305.00253 * 21 17 16 42 42 H 1.08008 * 120.79024 * 0.02562 * 23 22 21 43 43 H 1.07995 * 120.42278 * 179.72987 * 24 23 22 44 44 H 1.08002 * 119.61994 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.61486 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3235 1.7760 -1.4135 5 1 1.8310 1.2538 -2.2205 6 6 3.0673 2.9067 -1.6765 7 7 3.1767 3.3496 -2.9099 8 14 3.9196 3.8095 -0.2807 9 1 5.2850 3.2564 -0.0944 10 1 4.0115 5.2548 -0.6093 11 1 3.1397 3.6350 0.9708 12 16 2.2930 -1.4342 0.0006 13 8 3.6051 -1.1402 -0.4588 14 8 1.4453 -2.3871 -0.6260 15 7 2.4461 -1.9111 1.5791 16 6 1.2525 -2.2232 2.3691 17 6 1.6562 -3.0253 3.6079 18 1 2.4148 -2.4756 4.1653 19 6 2.2216 -4.3798 3.1766 20 8 3.4327 -4.1794 2.4448 21 6 0.4296 -3.2440 4.4959 22 6 0.8489 -3.9258 5.7727 23 6 1.2236 -3.1772 6.8781 24 6 1.6024 -3.8471 8.0312 25 6 1.5934 -5.2293 8.0408 26 7 1.2300 -5.9089 6.9709 27 6 0.8642 -5.3050 5.8569 28 1 -0.3633 0.0002 1.0277 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3634 -0.8899 -0.5138 31 1 1.6578 1.9999 0.6016 32 1 3.1913 1.1144 0.4205 33 1 3.6998 4.1454 -3.0949 34 1 3.3261 -1.9838 1.9806 35 1 0.5607 -2.8107 1.7654 36 1 0.7686 -1.2965 2.6779 37 1 2.4265 -4.9858 4.0591 38 1 1.4959 -4.8920 2.5447 39 1 3.8473 -4.9976 2.1389 40 1 -0.2926 -3.8690 3.9704 41 1 -0.0255 -2.2818 4.7304 42 1 1.2205 -2.0977 6.8416 43 1 1.9044 -3.2961 8.9095 44 1 1.8867 -5.7587 8.9353 45 1 0.5733 -5.8953 5.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414295080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:25 Heat of formation + Delta-G solvation = -91.336866 kcal Electronic energy + Delta-G solvation = -28380.262538 eV Core-core repulsion = 24331.688908 eV Total energy + Delta-G solvation = -4048.573630 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.70872 -38.25116 -36.55473 -35.63619 -35.48361 -35.10453 -34.08817 -32.49115 -32.35803 -30.65451 -28.36459 -26.59915 -25.58872 -25.10406 -23.92856 -22.53964 -21.88044 -20.72748 -18.77936 -17.61021 -17.52887 -17.13360 -16.96724 -16.77445 -16.57136 -16.14009 -15.76830 -15.36798 -14.84521 -14.51103 -14.19504 -14.07861 -13.80040 -13.59301 -13.44711 -13.30451 -13.09401 -12.74451 -12.65411 -12.50887 -12.32112 -12.11857 -11.73145 -11.61839 -11.41425 -11.27766 -11.17034 -11.15333 -10.95460 -10.61910 -10.41836 -10.25555 -10.23723 -10.11563 -9.83013 -9.53771 -9.32195 -9.17797 -8.56942 -8.08518 -6.06493 -4.05715 0.67695 0.87250 1.26223 3.29120 3.34520 3.36013 3.37199 3.57124 3.91239 4.02560 4.18242 4.24493 4.40730 4.42146 4.55378 4.57575 4.66802 4.72417 4.93318 5.03921 5.06028 5.20435 5.23442 5.24840 5.30061 5.32789 5.38216 5.49044 5.57841 5.65349 5.71288 5.77899 5.91698 5.93992 6.10284 6.26347 6.30274 6.47334 6.76005 7.06986 7.28328 7.46440 7.56407 7.57907 7.60989 8.51034 8.98171 9.53105 11.07039 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002710 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.467017 B =10327.855344 C =10932.393646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.993 5.993 3 C 0.228 3.772 4 C -0.533 4.533 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 S 2.786 3.214 13 O -0.966 6.966 14 O -0.997 6.997 15 N -1.121 6.121 16 C 0.130 3.870 17 C -0.090 4.090 18 H 0.087 0.913 19 C 0.079 3.921 20 O -0.565 6.565 21 C -0.072 4.072 22 C -0.130 4.130 23 C -0.071 4.071 24 C -0.170 4.170 25 C 0.091 3.909 26 N -0.484 5.484 27 C 0.100 3.900 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.265 0.735 34 H 0.418 0.582 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.045 0.955 38 H 0.049 0.951 39 H 0.379 0.621 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.312 -15.528 22.771 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.835 5.835 3 C 0.105 3.895 4 C -0.572 4.572 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.534 5.534 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.793 3.207 13 O -0.949 6.949 14 O -0.980 6.980 15 N -0.882 5.882 16 C 0.003 3.997 17 C -0.110 4.110 18 H 0.105 0.895 19 C 0.001 3.999 20 O -0.370 6.370 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.097 4.097 24 C -0.189 4.189 25 C -0.066 4.066 26 N -0.192 5.192 27 C -0.057 4.057 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.254 0.746 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.226 0.774 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.171 0.829 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.231 -16.116 21.963 27.946 hybrid contribution 0.867 1.148 1.059 1.786 sum -5.364 -14.968 23.022 27.979 Atomic orbital electron populations 1.21390 0.79998 1.03910 1.00016 1.57425 1.14335 1.22651 1.89059 1.19409 0.90961 0.80660 0.98509 1.21393 1.32239 1.11123 0.92469 0.90440 1.24879 0.95670 0.96935 0.95500 1.69898 1.40721 1.23940 1.18795 0.86896 0.80973 0.79208 0.82899 1.19731 1.21023 1.19030 1.01817 0.73223 0.72781 0.72872 1.93630 1.38271 1.84524 1.78509 1.93512 1.69421 1.61044 1.74050 1.56038 1.14137 1.84687 1.33341 1.21139 0.87618 0.98661 0.92270 1.21380 0.97381 0.96379 0.95869 0.89461 1.22281 0.86864 0.96204 0.94563 1.86451 1.39321 1.36015 1.75257 1.20535 0.97114 1.01696 0.91772 1.20887 1.00617 0.95204 0.96525 1.21564 0.95218 1.00771 0.92195 1.22177 1.01392 0.96057 0.99309 1.22779 0.95637 0.91587 0.96606 1.67704 1.10397 1.41245 0.99880 1.22719 0.95665 0.91620 0.95735 0.94339 0.90220 0.91383 0.95119 0.95076 0.92538 0.74631 0.90720 0.91894 0.93669 0.93237 0.77380 0.89696 0.89321 0.84630 0.84737 0.82860 0.82890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.53 10.69 59.85 0.64 2.16 16 2 N -0.99 -20.05 3.23 -123.05 -0.40 -20.45 16 3 C 0.23 5.41 4.17 -5.19 -0.02 5.39 16 4 C -0.53 -15.36 9.93 -34.44 -0.34 -15.70 16 5 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 6 C 0.07 2.14 5.47 -17.83 -0.10 2.04 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 8 Si 0.87 21.36 27.37 -169.99 -4.65 16.70 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -5.99 6.69 56.52 0.38 -5.62 16 12 S 2.79 54.99 6.09 -107.50 -0.66 54.34 16 13 O -0.97 -23.40 16.96 -57.17 -0.97 -24.37 16 14 O -1.00 -20.85 16.32 -57.17 -0.93 -21.78 16 15 N -1.12 -16.11 5.05 -10.61 -0.05 -16.17 16 16 C 0.13 1.40 5.66 -4.04 -0.02 1.38 16 17 C -0.09 -0.75 2.24 -90.63 -0.20 -0.95 16 18 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 19 C 0.08 0.67 6.16 37.15 0.23 0.90 16 20 O -0.57 -5.79 11.25 -35.23 -0.40 -6.19 16 21 C -0.07 -0.44 4.86 -27.88 -0.14 -0.57 16 22 C -0.13 -0.91 4.73 -104.49 -0.49 -1.40 16 23 C -0.07 -0.47 9.86 -39.28 -0.39 -0.86 16 24 C -0.17 -1.06 10.11 -39.44 -0.40 -1.46 16 25 C 0.09 0.66 11.18 -17.54 -0.20 0.47 16 26 N -0.48 -4.43 10.36 -13.25 -0.14 -4.57 16 27 C 0.10 0.78 9.06 -17.55 -0.16 0.62 16 28 H 0.04 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 30 H 0.07 1.07 7.05 -51.93 -0.37 0.70 16 31 H 0.03 0.68 7.52 -51.93 -0.39 0.29 16 32 H 0.03 0.75 6.62 -51.93 -0.34 0.40 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.42 5.80 7.36 -34.47 -0.25 5.55 16 35 H 0.07 0.80 7.75 -51.93 -0.40 0.40 16 36 H 0.06 0.59 8.08 -51.92 -0.42 0.17 16 37 H 0.05 0.35 5.93 -51.93 -0.31 0.04 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.38 2.53 9.12 45.56 0.42 2.95 16 40 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 41 H 0.09 0.45 8.10 -51.93 -0.42 0.03 16 42 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.15 0.93 7.99 -52.48 -0.42 0.52 16 LS Contribution 382.22 15.07 5.76 5.76 Total: -1.00 -38.50 382.22 -9.11 -47.61 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.86 Total: 4.10 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -1.59 Total: -7.99 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: 0.19 Total: -68.19 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -2.30 Total: -52.34 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.65 Total: 16.70 kcal Atomic # 16 Polarization: 54.99 SS G_CDS: -0.66 Total: 54.34 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.50 -9.11 -47.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414295080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.726 kcal (2) G-P(sol) polarization free energy of solvation -38.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds