Wall clock time and date at job start Wed Apr 1 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99236 * 2 1 4 4 C 1.50691 * 109.47298 * 275.00090 * 3 2 1 5 5 H 1.08000 * 120.00132 * 0.02562 * 4 3 2 6 6 C 1.37881 * 119.99838 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00124 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 120.00033 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.46930 * 90.00188 * 8 6 4 10 10 H 1.48495 * 109.46953 * 209.99721 * 8 6 4 11 11 H 1.48494 * 109.46954 * 329.99976 * 8 6 4 12 12 S 1.65598 * 120.00631 * 180.02562 * 2 1 3 13 13 O 1.42098 * 106.40578 * 156.45837 * 12 2 1 14 14 O 1.42101 * 106.39852 * 23.53756 * 12 2 1 15 15 N 1.65596 * 107.21620 * 269.99723 * 12 2 1 16 16 C 1.46505 * 119.99941 * 65.00008 * 15 12 2 17 17 C 1.52997 * 109.47212 * 164.99768 * 16 15 12 18 18 H 1.09004 * 109.47346 * 305.00035 * 17 16 15 19 19 C 1.53004 * 109.47236 * 64.99775 * 17 16 15 20 20 O 1.42904 * 109.47325 * 185.00172 * 19 17 16 21 21 C 1.52997 * 109.47504 * 184.99959 * 17 16 15 22 22 C 1.50691 * 109.47514 * 175.00045 * 21 17 16 23 23 C 1.38674 * 120.42338 * 89.99805 * 22 21 17 24 24 C 1.38624 * 118.42643 * 180.02562 * 23 22 21 25 25 C 1.38226 * 119.15751 * 359.97438 * 24 23 22 26 26 N 1.31848 * 120.76748 * 0.02562 * 25 24 23 27 27 C 1.31887 * 121.72528 * 359.70162 * 26 25 24 28 28 H 1.09003 * 109.46651 * 269.99469 * 1 2 3 29 29 H 1.08993 * 109.47539 * 29.99838 * 1 2 3 30 30 H 1.09003 * 109.46635 * 150.00271 * 1 2 3 31 31 H 1.08999 * 109.47181 * 35.01073 * 3 2 1 32 32 H 1.09004 * 109.46329 * 155.00336 * 3 2 1 33 33 H 0.96995 * 120.00521 * 180.02562 * 7 6 4 34 34 H 0.96997 * 120.00145 * 244.99128 * 15 12 2 35 35 H 1.09002 * 109.47068 * 284.99828 * 16 15 12 36 36 H 1.09001 * 109.47372 * 44.99916 * 16 15 12 37 37 H 1.08998 * 109.46828 * 305.00171 * 19 17 16 38 38 H 1.09002 * 109.47067 * 65.00027 * 19 17 16 39 39 H 0.96695 * 113.99864 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.46810 * 294.99909 * 21 17 16 41 41 H 1.08998 * 109.47247 * 54.99778 * 21 17 16 42 42 H 1.08005 * 120.78157 * 359.97438 * 23 22 21 43 43 H 1.07998 * 120.42323 * 180.02562 * 24 23 22 44 44 H 1.08001 * 119.61479 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.62222 * 180.31475 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2689 0.0000 4 6 2.3412 1.7659 -1.4153 5 1 1.9281 1.1940 -2.2331 6 6 3.0003 2.9507 -1.6663 7 7 3.1255 3.3847 -2.9014 8 14 3.7156 3.9393 -0.2519 9 1 5.1126 3.5036 0.0000 10 1 3.7026 5.3827 -0.6006 11 1 2.9001 3.7177 0.9691 12 16 2.2932 -1.4340 -0.0006 13 8 3.5761 -1.1564 -0.5450 14 8 1.4115 -2.4062 -0.5455 15 7 2.5384 -1.8591 1.5809 16 6 1.3949 -2.1788 2.4392 17 6 1.8879 -2.8863 3.7030 18 1 2.4791 -3.7586 3.4240 19 6 2.7522 -1.9251 4.5215 20 8 3.3074 -2.6190 5.6406 21 6 0.6868 -3.3309 4.5401 22 6 1.1673 -4.1341 5.7212 23 6 1.4722 -3.5067 6.9197 24 6 1.9112 -4.2854 7.9792 25 6 2.0291 -5.6519 7.8071 26 7 1.7301 -6.2146 6.6529 27 6 1.3046 -5.5057 5.6253 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6500 2.0043 0.5896 32 1 3.1857 1.1178 0.4343 33 1 3.5894 4.2180 -3.0780 34 1 3.4390 -1.8966 1.9390 35 1 0.8796 -1.2588 2.7154 36 1 0.7082 -2.8324 1.9013 37 1 3.5579 -1.5395 3.8969 38 1 2.1387 -1.0966 4.8756 39 1 3.8678 -2.0695 6.2055 40 1 0.1455 -2.4533 4.8935 41 1 0.0249 -3.9443 3.9288 42 1 1.3709 -2.4365 7.0249 43 1 2.1572 -3.8304 8.9273 44 1 2.3708 -6.2656 8.6275 45 1 1.0646 -6.0025 4.6969 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414295081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:29 Heat of formation + Delta-G solvation = -118.780534 kcal Electronic energy + Delta-G solvation = -28394.482456 eV Core-core repulsion = 24344.718780 eV Total energy + Delta-G solvation = -4049.763677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.05242 -38.92480 -38.28053 -37.26932 -36.85981 -36.49000 -34.66153 -34.48319 -32.80963 -31.37022 -30.25066 -27.09767 -26.79370 -26.29683 -24.31084 -23.81579 -22.99876 -21.29464 -20.36758 -19.16667 -18.76613 -18.42375 -17.98922 -17.81290 -17.42486 -17.20235 -16.57744 -16.16712 -16.06122 -15.75871 -15.39415 -15.19264 -14.65119 -14.56257 -14.47396 -14.20353 -14.14042 -13.93211 -13.75819 -13.53310 -13.38959 -13.28075 -13.14763 -13.10503 -12.96692 -12.73495 -12.38237 -12.34431 -12.23468 -12.05302 -11.95943 -11.69401 -11.56107 -11.02456 -10.77185 -10.49594 -10.20226 -10.14829 -9.75715 -9.59773 -8.27393 -6.33535 -0.35686 0.38195 0.64354 1.37882 1.42721 1.50913 2.05592 2.37103 2.64375 3.05985 3.06979 3.28423 3.48020 3.68718 3.80169 3.95625 4.05094 4.10979 4.16709 4.30141 4.32727 4.37831 4.50983 4.61306 4.66020 4.72380 4.72674 4.77448 4.78844 4.87336 4.91956 4.99568 5.05271 5.12116 5.18077 5.31806 5.38829 5.40866 5.50162 5.60348 5.73268 6.01784 6.09379 6.32761 6.70140 6.94649 7.22727 7.29508 8.90354 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.002685 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.571161 B =10424.683842 C =11166.433331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.997 5.997 3 C 0.235 3.765 4 C -0.544 4.544 5 H 0.025 0.975 6 C 0.002 3.998 7 N -0.951 5.951 8 Si 0.947 3.053 9 H -0.271 1.271 10 H -0.282 1.282 11 H -0.222 1.222 12 S 2.798 3.202 13 O -1.014 7.014 14 O -1.011 7.011 15 N -1.118 6.118 16 C 0.117 3.883 17 C -0.082 4.082 18 H 0.072 0.928 19 C 0.076 3.924 20 O -0.573 6.573 21 C -0.067 4.067 22 C -0.119 4.119 23 C -0.024 4.024 24 C -0.179 4.179 25 C 0.070 3.930 26 N -0.526 5.526 27 C 0.073 3.927 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.267 0.733 34 H 0.421 0.579 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.162 0.838 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.584 -10.549 27.126 29.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.839 5.839 3 C 0.110 3.890 4 C -0.583 4.583 5 H 0.043 0.957 6 C -0.195 4.195 7 N -0.592 5.592 8 Si 0.769 3.231 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.145 1.145 12 S 2.806 3.194 13 O -0.998 6.998 14 O -0.994 6.994 15 N -0.882 5.882 16 C -0.009 4.009 17 C -0.102 4.102 18 H 0.090 0.910 19 C -0.002 4.002 20 O -0.380 6.380 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.050 4.050 24 C -0.199 4.199 25 C -0.086 4.086 26 N -0.236 5.236 27 C -0.082 4.082 28 H 0.108 0.892 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.110 0.890 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.237 0.763 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.165 0.835 43 H 0.171 0.829 44 H 0.179 0.821 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.709 -12.300 25.819 29.163 hybrid contribution 1.227 1.937 0.123 2.296 sum -4.482 -10.363 25.942 28.292 Atomic orbital electron populations 1.21668 0.77713 1.03457 1.03206 1.57279 1.15852 1.21299 1.89449 1.19214 0.92054 0.82520 0.95171 1.21753 1.36214 1.06734 0.93633 0.95689 1.26012 0.95869 0.98756 0.98866 1.70084 1.44154 1.22924 1.21990 0.85737 0.79757 0.77372 0.80251 1.19616 1.20791 1.14471 1.01199 0.71983 0.72597 0.73657 1.93580 1.43163 1.85442 1.77597 1.93506 1.67781 1.60225 1.77862 1.55809 1.16072 1.85506 1.30859 1.21549 0.87294 1.01342 0.90670 1.21293 0.97035 0.98686 0.93220 0.91000 1.22230 0.96292 0.93938 0.87763 1.86665 1.68958 1.42191 1.40203 1.20533 0.96235 1.00305 0.93453 1.20734 1.00220 0.94489 0.96655 1.21482 0.91853 1.00527 0.91089 1.22310 1.01700 0.94767 1.01074 1.23008 0.96707 0.94099 0.94815 1.67591 1.12548 1.42089 1.01333 1.22768 0.96549 0.91768 0.97157 0.89237 0.91476 0.91205 0.92176 0.94667 0.92438 0.74325 0.88966 0.89622 0.93875 0.91347 0.76340 0.88401 0.89510 0.83502 0.82902 0.82077 0.83350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.44 10.68 127.77 1.36 3.80 16 2 N -1.00 -36.35 3.23 -543.22 -1.75 -38.11 16 3 C 0.24 10.15 4.15 85.63 0.36 10.51 16 4 C -0.54 -30.96 9.94 25.60 0.25 -30.71 16 5 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 6 C 0.00 0.13 5.47 84.66 0.46 0.60 16 7 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 8 Si 0.95 41.34 27.47 68.60 1.88 43.23 16 9 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.22 -8.11 6.54 99.48 0.65 -7.46 16 12 S 2.80 100.65 6.10 -56.49 -0.34 100.31 16 13 O -1.01 -46.93 17.11 -128.00 -2.19 -49.12 16 14 O -1.01 -39.38 16.21 -128.00 -2.07 -41.46 16 15 N -1.12 -25.82 5.91 -187.48 -1.11 -26.93 16 16 C 0.12 1.87 5.64 86.38 0.49 2.36 16 17 C -0.08 -1.10 2.33 -10.79 -0.03 -1.12 16 18 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 19 C 0.08 0.85 6.24 71.98 0.45 1.30 16 20 O -0.57 -6.54 9.06 -148.98 -1.35 -7.89 16 21 C -0.07 -0.72 4.86 29.84 0.15 -0.58 16 22 C -0.12 -1.74 4.26 -19.77 -0.08 -1.83 16 23 C -0.02 -0.28 6.80 22.47 0.15 -0.13 16 24 C -0.18 -2.20 10.11 22.36 0.23 -1.97 16 25 C 0.07 1.18 11.18 84.69 0.95 2.12 16 26 N -0.53 -11.53 10.36 -195.84 -2.03 -13.56 16 27 C 0.07 1.41 10.86 84.67 0.92 2.33 16 28 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 29 H 0.07 2.11 8.07 -2.39 -0.02 2.09 16 30 H 0.07 2.00 7.02 -2.39 -0.02 1.98 16 31 H 0.06 2.30 7.17 -2.39 -0.02 2.28 16 32 H 0.04 1.49 7.04 -2.39 -0.02 1.47 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.42 8.56 7.38 -96.75 -0.71 7.85 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 36 H 0.09 1.41 7.75 -2.39 -0.02 1.39 16 37 H 0.04 0.54 6.79 -2.39 -0.02 0.53 16 38 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.39 1.81 9.12 -74.06 -0.68 1.14 16 40 H 0.10 0.69 8.10 -2.39 -0.02 0.67 16 41 H 0.09 0.86 8.09 -2.39 -0.02 0.84 16 42 H 0.15 1.07 7.83 -2.91 -0.02 1.05 16 43 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -85.28 380.13 -3.44 -88.72 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.43 Total: 17.68 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 5.65 Total: -13.33 kcal Atomic # 7 Polarization: -133.55 SS G_CDS: -4.59 Total: -138.14 kcal Atomic # 8 Polarization: -92.85 SS G_CDS: -5.61 Total: -98.46 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.88 Total: 43.23 kcal Atomic # 16 Polarization: 100.65 SS G_CDS: -0.34 Total: 100.31 kcal Total: -85.28 -3.44 -88.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414295081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.056 kcal (2) G-P(sol) polarization free energy of solvation -85.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds