Wall clock time and date at job start Wed Apr 1 2020 02:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99691 * 2 1 4 4 C 1.52995 * 109.46813 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.34950 * 126.03098 * 125.30910 * 5 4 3 7 7 C 1.35327 * 107.73825 * 180.15197 * 6 5 4 8 8 C 1.50697 * 126.03438 * 179.87528 * 7 6 5 9 9 N 1.46500 * 109.47252 * 269.71300 * 8 7 6 10 10 S 1.65598 * 120.00011 * 165.00416 * 9 8 7 11 11 O 1.42104 * 104.27721 * 308.92614 * 10 9 8 12 12 O 1.42102 * 104.27547 * 181.07217 * 10 9 8 13 13 C 1.81402 * 104.44974 * 65.00162 * 10 9 8 14 14 C 1.53001 * 109.46891 * 186.02560 * 13 10 9 15 15 C 1.50699 * 115.55174 * 299.72056 * 14 13 10 16 16 H 1.07999 * 119.99758 * 95.16501 * 15 14 13 17 17 C 1.37875 * 120.00017 * 275.16466 * 15 14 13 18 18 N 1.31516 * 119.99681 * 7.14031 * 17 15 14 19 19 Si 1.86798 * 120.00198 * 187.13542 * 17 15 14 20 20 H 1.48496 * 109.47369 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47205 * 300.00437 * 19 17 15 22 22 H 1.48507 * 109.46959 * 60.00253 * 19 17 15 23 23 C 1.53008 * 117.49594 * 85.39127 * 14 13 10 24 24 C 1.53003 * 117.49760 * 154.04894 * 14 13 10 25 25 C 1.39867 * 107.91822 * 359.61256 * 7 6 5 26 26 N 1.30829 * 108.20713 * 0.23891 * 25 7 6 27 27 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47545 * 299.99739 * 1 2 3 29 29 H 1.09003 * 109.47258 * 59.99868 * 1 2 3 30 30 H 1.08999 * 109.46852 * 60.00393 * 3 2 1 31 31 H 1.08995 * 109.47526 * 299.99993 * 3 2 1 32 32 H 1.08999 * 109.46914 * 60.00648 * 4 3 2 33 33 H 1.09002 * 109.47588 * 300.00386 * 4 3 2 34 34 H 1.07999 * 126.13265 * 0.02562 * 6 5 4 35 35 H 1.09005 * 109.46725 * 149.71836 * 8 7 6 36 36 H 1.08996 * 109.47376 * 29.71672 * 8 7 6 37 37 H 0.97001 * 120.00090 * 345.00219 * 9 8 7 38 38 H 1.08999 * 109.47001 * 66.02450 * 13 10 9 39 39 H 1.08995 * 109.46816 * 306.02411 * 13 10 9 40 40 H 0.97000 * 120.00212 * 355.43693 * 18 17 15 41 41 H 1.08998 * 117.49599 * 214.99858 * 23 14 13 42 42 H 1.08992 * 117.49997 * 0.02562 * 23 14 13 43 43 H 1.09005 * 117.49778 * 359.97438 * 24 14 13 44 44 H 1.08996 * 117.49811 * 144.97546 * 24 14 13 45 45 H 1.08000 * 125.89234 * 180.22333 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 5.0300 2.9915 0.8924 7 6 5.3259 4.2664 0.5482 8 6 6.2846 5.1792 1.2683 9 7 5.5620 5.9349 2.2944 10 16 6.4000 6.7312 3.4802 11 8 7.2827 5.7492 4.0053 12 8 5.3898 7.3165 4.2903 13 6 7.3284 8.0137 2.5948 14 6 8.2657 8.7294 3.5697 15 6 7.5940 9.4223 4.7271 16 1 7.4969 8.9166 5.6765 17 6 7.1034 10.7017 4.5741 18 7 7.0941 11.2645 3.3855 19 14 6.4517 11.6355 6.0549 20 1 5.9852 12.9788 5.6270 21 1 5.3182 10.8857 6.6534 22 1 7.5334 11.7841 7.0615 23 6 9.6368 8.0991 3.8228 24 6 9.5243 9.3794 2.9912 25 6 4.5893 4.5849 -0.5973 26 7 3.8729 3.5407 -0.9261 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8573 0.6437 -0.8892 33 1 3.8567 0.6439 0.8908 34 1 5.4382 2.4473 1.7311 35 1 6.7322 5.8715 0.5550 36 1 7.0681 4.5852 1.7387 37 1 4.5927 5.9688 2.2793 38 1 6.6328 8.7341 2.1645 39 1 7.9142 7.5540 1.7989 40 1 7.4923 10.8065 2.6288 41 1 10.0529 8.1857 4.8265 42 1 9.8712 7.1750 3.2946 43 1 9.6847 9.2968 1.9162 44 1 9.8661 10.3083 3.4475 45 1 4.6085 5.5298 -1.1200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001463581623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:37 Heat of formation + Delta-G solvation = -17.215488 kcal Electronic energy + Delta-G solvation = -27559.370877 eV Core-core repulsion = 23514.011392 eV Total energy + Delta-G solvation = -4045.359486 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51617 -38.46086 -37.05765 -36.30568 -35.52146 -35.07623 -33.81212 -31.96700 -30.57581 -29.55667 -28.28489 -26.87199 -25.10528 -24.94357 -23.77432 -21.39462 -21.07655 -20.54370 -19.91861 -18.72511 -17.71019 -16.96900 -16.84081 -16.78606 -16.40958 -15.81782 -15.69494 -15.33400 -14.96515 -14.44325 -14.34331 -14.00122 -13.83902 -13.72305 -13.70365 -13.19059 -13.10952 -12.63352 -12.55275 -12.38187 -12.12384 -11.85312 -11.83452 -11.38956 -11.26698 -11.19863 -11.13696 -10.76773 -10.75937 -10.61087 -10.33964 -10.24229 -10.06985 -9.72377 -9.70612 -9.23915 -8.75689 -8.64981 -8.47207 -8.30182 -6.44528 -4.23160 1.01382 1.58997 2.02217 2.50291 3.29996 3.46177 3.50893 3.57640 3.67355 4.14180 4.41006 4.49295 4.51240 4.59593 4.65429 4.75004 4.85460 4.85948 4.87807 4.97916 5.05556 5.12848 5.16666 5.18708 5.20242 5.25773 5.50696 5.51667 5.59952 5.79693 5.95066 6.04669 6.12320 6.20625 6.36793 6.36853 6.50545 6.54827 6.69429 6.76861 7.03445 7.18602 7.28970 7.41216 8.04949 8.34820 8.78281 9.55934 10.95533 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002314 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.122434 B =12094.994065 C =12632.472811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.139 3.861 5 N -0.375 5.375 6 C 0.079 3.921 7 C -0.244 4.244 8 C 0.195 3.805 9 N -1.130 6.130 10 S 2.618 3.382 11 O -0.973 6.973 12 O -0.946 6.946 13 C -0.568 4.568 14 C 0.021 3.979 15 C -0.592 4.592 16 H 0.062 0.938 17 C 0.040 3.960 18 N -0.897 5.897 19 Si 1.063 2.937 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.190 4.190 24 C -0.165 4.165 25 C 0.066 3.934 26 N -0.298 5.298 27 H 0.090 0.910 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.179 0.821 35 H 0.069 0.931 36 H 0.083 0.917 37 H 0.412 0.588 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.275 0.725 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 -19.005 -9.929 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.067 4.067 7 C -0.257 4.257 8 C 0.068 3.932 9 N -0.888 5.888 10 S 2.714 3.286 11 O -0.963 6.963 12 O -0.937 6.937 13 C -0.700 4.700 14 C 0.019 3.981 15 C -0.629 4.629 16 H 0.080 0.920 17 C -0.168 4.168 18 N -0.531 5.531 19 Si 0.890 3.110 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.212 1.212 23 C -0.227 4.227 24 C -0.204 4.204 25 C -0.121 4.121 26 N -0.119 5.119 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.196 0.804 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.245 0.755 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.756 -18.637 -9.379 22.628 hybrid contribution 0.873 -0.530 -0.691 1.233 sum -7.883 -19.168 -10.071 23.043 Atomic orbital electron populations 1.22783 0.79926 1.03100 1.00446 1.87772 1.20612 1.27001 1.95619 1.22668 0.92674 0.85274 1.02086 1.21374 0.92536 0.79109 1.05274 1.48409 1.33836 1.11819 1.21721 1.22508 0.93368 0.95529 0.95346 1.20048 1.08612 0.95528 1.01485 1.19396 0.92187 0.92428 0.89216 1.56125 1.18715 1.66963 1.46967 1.04779 0.74788 0.75037 0.74022 1.93488 1.67976 1.58191 1.76636 1.93563 1.56753 1.78766 1.64575 1.30108 1.12991 1.16068 1.10871 1.18556 0.85247 0.98793 0.95489 1.21378 1.42883 1.02292 0.96346 0.92020 1.25808 0.94008 0.95120 1.01818 1.70770 1.39658 1.42538 1.00084 0.83643 0.76825 0.76165 0.74394 1.20675 1.20677 1.21175 1.23043 1.03185 0.95640 1.00864 1.22793 1.04448 0.96400 0.96793 1.23917 0.94410 0.97897 0.95868 1.77356 1.24205 0.96728 1.13591 0.89168 0.93730 0.93719 0.92551 0.91573 0.88785 0.87602 0.80403 0.91255 0.89916 0.75500 0.85545 0.88192 0.91405 0.89329 0.90599 0.91191 0.89348 0.79618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.20 10.70 -35.23 -0.38 -3.57 16 3 C 0.05 0.40 6.12 37.16 0.23 0.62 16 4 C 0.14 1.01 6.88 -4.04 -0.03 0.98 16 5 N -0.37 -3.67 3.68 -61.36 -0.23 -3.90 16 6 C 0.08 0.77 11.36 -17.22 -0.20 0.58 16 7 C -0.24 -2.63 5.50 -105.05 -0.58 -3.21 16 8 C 0.19 2.29 6.61 -5.19 -0.03 2.25 16 9 N -1.13 -16.22 5.88 -11.66 -0.07 -16.29 16 10 S 2.62 51.65 5.10 -107.50 -0.55 51.10 16 11 O -0.97 -20.78 17.50 -57.54 -1.01 -21.79 16 12 O -0.95 -22.66 17.57 -57.54 -1.01 -23.67 16 13 C -0.57 -11.43 5.87 37.16 0.22 -11.21 16 14 C 0.02 0.51 0.95 -155.65 -0.15 0.36 16 15 C -0.59 -16.30 7.88 -34.44 -0.27 -16.57 16 16 H 0.06 1.75 7.82 -52.49 -0.41 1.34 16 17 C 0.04 1.11 5.39 -17.82 -0.10 1.01 16 18 N -0.90 -25.71 13.57 55.43 0.75 -24.95 16 19 Si 1.06 25.30 29.91 -169.99 -5.08 20.22 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 23 C -0.19 -4.07 9.95 -26.69 -0.27 -4.33 16 24 C -0.17 -3.64 8.74 -26.69 -0.23 -3.87 16 25 C 0.07 0.71 11.96 -17.37 -0.21 0.50 16 26 N -0.30 -3.43 12.42 30.62 0.38 -3.05 16 27 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.11 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.18 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.96 7.69 -51.93 -0.40 0.56 16 37 H 0.41 5.47 8.61 -34.47 -0.30 5.17 16 38 H 0.13 2.63 7.79 -51.92 -0.40 2.22 16 39 H 0.10 1.62 8.11 -51.93 -0.42 1.20 16 40 H 0.27 7.64 6.17 -40.82 -0.25 7.39 16 41 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 45 H 0.19 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 395.80 15.07 5.96 5.96 Total: -1.00 -36.01 395.80 -8.62 -44.63 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.90 Total: 6.90 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: -0.50 Total: -31.58 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.84 Total: -48.20 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -2.39 Total: -49.03 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.08 Total: 20.22 kcal Atomic # 16 Polarization: 51.65 SS G_CDS: -0.55 Total: 51.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.01 -8.62 -44.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463581623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.417 kcal (2) G-P(sol) polarization free energy of solvation -36.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds