Wall clock time and date at job start Wed Apr 1 2020 02:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99691 * 2 1 4 4 C 1.52995 * 109.46813 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.47168 * 180.02562 * 4 3 2 6 6 C 1.34950 * 126.03098 * 125.30910 * 5 4 3 7 7 C 1.35327 * 107.73825 * 180.15197 * 6 5 4 8 8 C 1.50697 * 126.03438 * 179.87528 * 7 6 5 9 9 N 1.46500 * 109.47252 * 269.71300 * 8 7 6 10 10 S 1.65598 * 120.00011 * 165.00416 * 9 8 7 11 11 O 1.42104 * 104.27721 * 308.92614 * 10 9 8 12 12 O 1.42102 * 104.27547 * 181.07217 * 10 9 8 13 13 C 1.81402 * 104.44974 * 65.00162 * 10 9 8 14 14 C 1.53001 * 109.46891 * 186.02560 * 13 10 9 15 15 C 1.50699 * 115.55174 * 299.72056 * 14 13 10 16 16 H 1.07999 * 119.99758 * 95.16501 * 15 14 13 17 17 C 1.37875 * 120.00017 * 275.16466 * 15 14 13 18 18 N 1.31516 * 119.99681 * 7.14031 * 17 15 14 19 19 Si 1.86798 * 120.00198 * 187.13542 * 17 15 14 20 20 H 1.48496 * 109.47369 * 180.02562 * 19 17 15 21 21 H 1.48506 * 109.47205 * 300.00437 * 19 17 15 22 22 H 1.48507 * 109.46959 * 60.00253 * 19 17 15 23 23 C 1.53008 * 117.49594 * 85.39127 * 14 13 10 24 24 C 1.53003 * 117.49760 * 154.04894 * 14 13 10 25 25 C 1.39867 * 107.91822 * 359.61256 * 7 6 5 26 26 N 1.30829 * 108.20713 * 0.23891 * 25 7 6 27 27 H 1.09005 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47545 * 299.99739 * 1 2 3 29 29 H 1.09003 * 109.47258 * 59.99868 * 1 2 3 30 30 H 1.08999 * 109.46852 * 60.00393 * 3 2 1 31 31 H 1.08995 * 109.47526 * 299.99993 * 3 2 1 32 32 H 1.08999 * 109.46914 * 60.00648 * 4 3 2 33 33 H 1.09002 * 109.47588 * 300.00386 * 4 3 2 34 34 H 1.07999 * 126.13265 * 0.02562 * 6 5 4 35 35 H 1.09005 * 109.46725 * 149.71836 * 8 7 6 36 36 H 1.08996 * 109.47376 * 29.71672 * 8 7 6 37 37 H 0.97001 * 120.00090 * 345.00219 * 9 8 7 38 38 H 1.08999 * 109.47001 * 66.02450 * 13 10 9 39 39 H 1.08995 * 109.46816 * 306.02411 * 13 10 9 40 40 H 0.97000 * 120.00212 * 355.43693 * 18 17 15 41 41 H 1.08998 * 117.49599 * 214.99858 * 23 14 13 42 42 H 1.08992 * 117.49997 * 0.02562 * 23 14 13 43 43 H 1.09005 * 117.49778 * 359.97438 * 24 14 13 44 44 H 1.08996 * 117.49811 * 144.97546 * 24 14 13 45 45 H 1.08000 * 125.89234 * 180.22333 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 5.0300 2.9915 0.8924 7 6 5.3259 4.2664 0.5482 8 6 6.2846 5.1792 1.2683 9 7 5.5620 5.9349 2.2944 10 16 6.4000 6.7312 3.4802 11 8 7.2827 5.7492 4.0053 12 8 5.3898 7.3165 4.2903 13 6 7.3284 8.0137 2.5948 14 6 8.2657 8.7294 3.5697 15 6 7.5940 9.4223 4.7271 16 1 7.4969 8.9166 5.6765 17 6 7.1034 10.7017 4.5741 18 7 7.0941 11.2645 3.3855 19 14 6.4517 11.6355 6.0549 20 1 5.9852 12.9788 5.6270 21 1 5.3182 10.8857 6.6534 22 1 7.5334 11.7841 7.0615 23 6 9.6368 8.0991 3.8228 24 6 9.5243 9.3794 2.9912 25 6 4.5893 4.5849 -0.5973 26 7 3.8729 3.5407 -0.9261 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8573 0.6437 -0.8892 33 1 3.8567 0.6439 0.8908 34 1 5.4382 2.4473 1.7311 35 1 6.7322 5.8715 0.5550 36 1 7.0681 4.5852 1.7387 37 1 4.5927 5.9688 2.2793 38 1 6.6328 8.7341 2.1645 39 1 7.9142 7.5540 1.7989 40 1 7.4923 10.8065 2.6288 41 1 10.0529 8.1857 4.8265 42 1 9.8712 7.1750 3.2946 43 1 9.6847 9.2968 1.9162 44 1 9.8661 10.3083 3.4475 45 1 4.6085 5.5298 -1.1200 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001463581623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:36 Heat of formation + Delta-G solvation = -44.071274 kcal Electronic energy + Delta-G solvation = -27560.535432 eV Core-core repulsion = 23514.011392 eV Total energy + Delta-G solvation = -4046.524040 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26653 -39.03451 -38.84094 -37.94470 -36.81197 -36.47186 -34.55894 -34.01669 -31.38927 -30.28908 -29.90648 -27.41703 -27.01588 -25.94033 -24.43359 -23.10653 -21.82435 -21.75887 -21.28345 -20.24871 -18.74999 -18.58713 -18.17999 -17.49018 -17.28055 -16.97556 -16.67813 -16.41606 -15.84055 -15.66549 -15.62634 -15.58441 -15.21381 -14.91605 -14.60743 -14.52789 -14.30426 -14.00599 -13.59700 -13.45163 -13.05053 -12.98446 -12.92802 -12.91382 -12.87942 -12.65994 -12.50200 -12.36293 -12.30101 -12.06216 -11.92732 -11.59776 -11.43664 -10.81475 -10.56133 -10.52008 -10.48419 -10.44419 -10.03195 -9.53945 -8.59158 -6.36715 -0.51212 0.83632 1.37132 1.53194 1.60221 1.63958 1.79083 2.26744 2.55842 2.74549 2.97361 3.15674 3.21795 3.46947 3.54013 3.83602 3.85556 3.90630 3.98962 4.16931 4.19566 4.20732 4.38129 4.39922 4.42261 4.42984 4.45758 4.51434 4.61645 4.67545 4.71398 4.79285 4.81957 4.87206 5.03833 5.07014 5.15324 5.30699 5.46757 5.62025 5.92213 6.04177 6.04924 6.16652 6.19686 6.65464 6.67961 7.45641 8.83079 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.002314 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.122434 B =12094.994065 C =12632.472811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.375 5.375 6 C 0.083 3.917 7 C -0.258 4.258 8 C 0.188 3.812 9 N -1.114 6.114 10 S 2.633 3.367 11 O -0.991 6.991 12 O -0.998 6.998 13 C -0.565 4.565 14 C -0.016 4.016 15 C -0.604 4.604 16 H 0.039 0.961 17 C -0.003 4.003 18 N -0.918 5.918 19 Si 1.092 2.908 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.268 1.268 23 C -0.178 4.178 24 C -0.159 4.159 25 C 0.063 3.937 26 N -0.326 5.326 27 H 0.105 0.895 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.128 0.872 34 H 0.202 0.798 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.272 0.728 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.065 0.935 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.964 -20.502 -10.936 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.014 3.986 5 N -0.157 5.157 6 C -0.065 4.065 7 C -0.271 4.271 8 C 0.062 3.938 9 N -0.875 5.875 10 S 2.730 3.270 11 O -0.981 6.981 12 O -0.988 6.988 13 C -0.697 4.697 14 C -0.018 4.018 15 C -0.641 4.641 16 H 0.057 0.943 17 C -0.206 4.206 18 N -0.553 5.553 19 Si 0.915 3.085 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.193 1.193 23 C -0.215 4.215 24 C -0.198 4.198 25 C -0.124 4.124 26 N -0.147 5.147 27 H 0.124 0.876 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.146 0.854 34 H 0.219 0.781 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.135 0.865 39 H 0.161 0.839 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.352 -20.148 -10.389 24.158 hybrid contribution 0.732 -0.203 -0.426 0.871 sum -7.620 -20.350 -10.815 24.272 Atomic orbital electron populations 1.22966 0.78798 1.04309 1.00830 1.87749 1.21929 1.27029 1.95654 1.22559 0.93132 0.85147 1.01256 1.21579 0.92062 0.78235 1.06689 1.48592 1.33645 1.12209 1.21273 1.22944 0.92621 0.95497 0.95438 1.19996 1.09345 0.95896 1.01863 1.19667 0.92277 0.92958 0.88859 1.55676 1.18827 1.66281 1.46693 1.04009 0.74106 0.74654 0.74273 1.93455 1.68566 1.58430 1.77659 1.93492 1.58339 1.79851 1.67138 1.29981 1.12733 1.15825 1.11122 1.18674 0.86508 1.00654 0.95959 1.21588 1.42943 1.02584 0.96984 0.94253 1.26813 0.94335 0.96228 1.03237 1.70840 1.41146 1.42903 1.00417 0.83274 0.76967 0.75486 0.72818 1.20137 1.20725 1.19325 1.23118 1.00942 0.96618 1.00845 1.22760 1.02947 0.95741 0.98345 1.24253 0.93885 0.98369 0.95906 1.77328 1.25110 0.97502 1.14749 0.87619 0.93356 0.93345 0.93043 0.92733 0.88220 0.85360 0.78097 0.89051 0.89467 0.74682 0.86488 0.83854 0.91714 0.90164 0.87512 0.88311 0.91620 0.78035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.13 10.70 -148.98 -1.59 -7.73 16 3 C 0.06 0.83 6.12 71.98 0.44 1.27 16 4 C 0.14 1.73 6.88 86.38 0.59 2.32 16 5 N -0.37 -6.65 3.68 -348.04 -1.28 -7.93 16 6 C 0.08 1.41 11.36 83.54 0.95 2.36 16 7 C -0.26 -4.95 5.50 -20.14 -0.11 -5.07 16 8 C 0.19 3.87 6.61 85.63 0.57 4.44 16 9 N -1.11 -29.91 5.88 -190.79 -1.12 -31.03 16 10 S 2.63 101.34 5.10 -56.49 -0.29 101.05 16 11 O -0.99 -40.94 17.50 -127.65 -2.23 -43.17 16 12 O -1.00 -48.39 17.57 -127.65 -2.24 -50.63 16 13 C -0.56 -21.74 5.87 71.98 0.42 -21.32 16 14 C -0.02 -0.74 0.95 -52.92 -0.05 -0.79 16 15 C -0.60 -33.61 7.88 25.60 0.20 -33.41 16 16 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 17 C 0.00 -0.20 5.39 84.65 0.46 0.26 16 18 N -0.92 -52.89 13.57 21.45 0.29 -52.60 16 19 Si 1.09 51.36 29.91 68.60 2.05 53.41 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 C -0.18 -7.29 9.95 30.62 0.30 -6.98 16 24 C -0.16 -6.75 8.74 30.62 0.27 -6.48 16 25 C 0.06 1.22 11.96 85.24 1.02 2.24 16 26 N -0.33 -7.05 12.42 -57.03 -0.71 -7.76 16 27 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.13 1.05 8.07 -2.39 -0.02 1.03 16 34 H 0.20 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.09 1.75 7.69 -2.39 -0.02 1.73 16 37 H 0.42 10.53 8.61 -96.75 -0.83 9.69 16 38 H 0.12 4.76 7.79 -2.39 -0.02 4.74 16 39 H 0.14 4.12 8.11 -2.39 -0.02 4.10 16 40 H 0.27 15.17 6.17 -92.71 -0.57 14.60 16 41 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 43 H 0.10 3.57 8.14 -2.38 -0.02 3.55 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.20 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -78.06 395.80 -0.46 -78.51 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 0.36 Total: 27.50 kcal Atomic # 6 Polarization: -65.94 SS G_CDS: 6.31 Total: -59.63 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -2.82 Total: -99.32 kcal Atomic # 8 Polarization: -95.46 SS G_CDS: -6.07 Total: -101.53 kcal Atomic # 14 Polarization: 51.36 SS G_CDS: 2.05 Total: 53.41 kcal Atomic # 16 Polarization: 101.34 SS G_CDS: -0.29 Total: 101.05 kcal Total: -78.06 -0.46 -78.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001463581623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.443 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds