Wall clock time and date at job start Wed Apr 1 2020 01:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34422 * 124.34519 * 2 1 4 4 O 1.21274 * 124.94707 * 359.30472 * 3 2 1 5 5 C 1.51283 * 110.11487 * 179.56950 * 3 2 1 6 6 C 1.54632 * 104.19524 * 343.74675 * 5 3 2 7 7 C 1.46763 * 124.35583 * 179.97438 * 2 1 3 8 8 H 1.08998 * 110.24123 * 316.04468 * 7 2 1 9 9 C 1.53003 * 110.24264 * 77.95324 * 7 2 1 10 10 C 1.50696 * 109.46902 * 185.80713 * 9 7 2 11 11 O 1.21279 * 120.00450 * 5.71383 * 10 9 7 12 12 N 1.34784 * 119.99895 * 185.70898 * 10 9 7 13 13 C 1.46499 * 119.99886 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.46968 * 180.02562 * 13 12 10 15 15 N 1.46501 * 109.47049 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99704 * 180.02562 * 15 14 13 17 17 O 1.21277 * 120.00360 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99676 * 179.97438 * 16 15 14 19 19 S 1.81001 * 109.46939 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99847 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00288 * 0.02562 * 20 19 18 22 22 C 1.38798 * 120.00127 * 179.97438 * 20 19 18 23 23 N 1.31625 * 120.00447 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99946 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47417 * 89.99295 * 24 22 20 26 26 H 1.48497 * 109.47423 * 209.99792 * 24 22 20 27 27 H 1.48501 * 109.46987 * 329.99564 * 24 22 20 28 28 H 1.08997 * 109.47403 * 354.97730 * 1 2 3 29 29 H 1.09004 * 109.46508 * 114.97256 * 1 2 3 30 30 H 1.08995 * 109.47263 * 234.96962 * 1 2 3 31 31 H 1.08990 * 110.48826 * 102.42461 * 5 3 2 32 32 H 1.09001 * 110.49023 * 225.07064 * 5 3 2 33 33 H 1.09004 * 110.96873 * 266.67767 * 6 5 3 34 34 H 1.08997 * 111.00064 * 142.92853 * 6 5 3 35 35 H 1.09008 * 109.47071 * 305.80156 * 9 7 2 36 36 H 1.08998 * 109.47421 * 65.80516 * 9 7 2 37 37 H 0.96998 * 119.99970 * 0.02562 * 12 10 9 38 38 H 1.08995 * 109.47533 * 300.00220 * 13 12 10 39 39 H 1.09007 * 109.46922 * 60.00628 * 13 12 10 40 40 H 1.09009 * 109.46965 * 300.00301 * 14 13 12 41 41 H 1.08994 * 109.47422 * 59.99958 * 14 13 12 42 42 H 0.96998 * 120.00063 * 359.97438 * 15 14 13 43 43 H 1.08995 * 109.47404 * 299.99635 * 18 16 15 44 44 H 1.09007 * 109.46998 * 60.00010 * 18 16 15 45 45 H 0.97003 * 120.00676 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2234 1.1099 0.0000 4 8 1.7946 2.2442 -0.0121 5 6 3.6898 0.7380 0.0107 6 6 3.7009 -0.7485 0.4366 7 6 2.2932 -1.2116 0.0005 8 1 1.8983 -1.9381 0.7107 9 6 2.3446 -1.8183 -1.4031 10 6 3.0781 -3.1339 -1.3551 11 8 3.4257 -3.5959 -0.2890 12 7 3.3479 -3.7971 -2.4970 13 6 4.0614 -5.0757 -2.4504 14 6 4.2381 -5.6133 -3.8719 15 7 4.9511 -6.8922 -3.8252 16 6 5.2216 -7.5550 -4.9672 17 8 4.8744 -7.0928 -6.0334 18 6 5.9556 -8.8703 -4.9192 19 16 6.1644 -9.5063 -6.6009 20 6 7.0260 -11.0042 -6.2567 21 1 7.2608 -11.2700 -5.2366 22 6 7.4021 -11.8432 -7.2964 23 7 8.0453 -12.9625 -7.0393 24 14 6.9955 -11.3839 -9.0609 25 1 8.1084 -10.5847 -9.6334 26 1 6.8092 -12.6193 -9.8636 27 1 5.7455 -10.5826 -9.0883 28 1 -0.3634 1.0237 0.0900 29 1 -0.3632 -0.4339 -0.9317 30 1 -0.3633 -0.5899 0.8415 31 1 4.1197 0.8529 -0.9842 32 1 4.2324 1.3462 0.7344 33 1 3.8265 -0.8442 1.5152 34 1 4.4755 -1.3013 -0.0949 35 1 1.3297 -1.9813 -1.7659 36 1 2.8655 -1.1362 -2.0750 37 1 3.0702 -3.4275 -3.3497 38 1 5.0401 -4.9293 -1.9935 39 1 3.4880 -5.7905 -1.8599 40 1 3.2594 -5.7597 -4.3292 41 1 4.8115 -4.8985 -4.4620 42 1 5.2292 -7.2617 -2.9725 43 1 6.9340 -8.7240 -4.4617 44 1 5.3818 -9.5852 -4.3294 45 1 8.3085 -13.5486 -7.7660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491123051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:02 Heat of formation + Delta-G solvation = -110.514000 kcal Electronic energy + Delta-G solvation = -26005.485653 eV Core-core repulsion = 21956.080440 eV Total energy + Delta-G solvation = -4049.405213 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.30169 -40.04499 -39.35441 -37.18013 -36.11279 -34.16848 -33.36968 -32.47914 -31.67781 -30.31746 -28.24618 -27.16450 -26.02095 -25.63471 -23.20683 -22.22560 -21.07606 -20.45652 -19.86967 -18.13054 -17.77629 -17.14365 -16.98033 -16.62370 -16.38259 -16.03154 -15.84121 -15.58071 -15.53162 -14.98809 -14.74097 -14.37532 -14.22325 -13.93512 -13.80798 -13.61465 -13.40848 -13.32883 -12.93979 -12.86103 -12.83752 -12.66201 -12.47430 -12.20040 -11.85252 -11.55326 -11.49706 -11.31168 -11.04603 -10.67798 -10.52562 -10.28615 -9.90704 -9.68341 -9.65093 -9.33016 -9.18722 -9.03740 -8.56045 -6.97234 -6.32649 -4.05221 2.05610 2.07966 2.21889 2.54448 2.83927 2.84081 3.29028 3.34144 3.46580 3.61915 3.76477 3.89433 4.02570 4.18494 4.29237 4.37274 4.39498 4.59458 4.66159 4.67872 4.70321 4.77814 4.84510 4.95226 5.02504 5.06409 5.09563 5.20242 5.21589 5.26625 5.40025 5.47201 5.47395 5.55939 5.69661 5.81834 5.94541 5.94716 6.31758 6.54435 6.88130 7.42716 7.62988 7.66151 7.90198 8.33667 8.37935 9.13292 10.76515 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.038515 B = 0.001386 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.818472 B =20197.059022 C =20384.603345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.620 5.620 3 C 0.517 3.483 4 O -0.533 6.533 5 C -0.159 4.159 6 C -0.120 4.120 7 C 0.147 3.853 8 H 0.101 0.899 9 C -0.154 4.154 10 C 0.520 3.480 11 O -0.533 6.533 12 N -0.726 5.726 13 C 0.108 3.892 14 C 0.111 3.889 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.089 0.911 22 C 0.096 3.904 23 N -0.879 5.879 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.403 0.597 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.781 25.141 15.913 32.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.354 5.354 3 C 0.305 3.695 4 O -0.409 6.409 5 C -0.199 4.199 6 C -0.158 4.158 7 C 0.043 3.957 8 H 0.119 0.881 9 C -0.195 4.195 10 C 0.305 3.695 11 O -0.410 6.410 12 N -0.379 5.379 13 C -0.016 4.016 14 C -0.014 4.014 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.107 0.893 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.117 0.883 37 H 0.239 0.761 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.237 0.763 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.353 26.014 14.832 32.787 hybrid contribution 0.331 -0.787 0.332 0.916 sum -13.021 25.227 15.164 32.186 Atomic orbital electron populations 1.21605 0.77913 1.03882 1.01746 1.48250 1.06561 1.07043 1.73548 1.21000 0.89534 0.84231 0.74726 1.90736 1.78824 1.21121 1.50264 1.22407 0.94435 0.98094 1.04957 1.22601 0.95788 0.94180 1.03212 1.21363 0.91873 0.86875 0.95635 0.88097 1.22044 1.02679 0.94938 0.99866 1.20378 0.79351 0.85978 0.83776 1.90755 1.52419 1.68686 1.29121 1.45822 1.59544 1.22959 1.09609 1.21475 0.98002 0.85224 0.96893 1.21329 0.98180 0.86343 0.95571 1.45761 1.60934 1.22564 1.09807 1.20304 0.78710 0.85761 0.83281 1.90707 1.51319 1.68004 1.29143 1.23279 1.02956 0.95907 1.05365 1.84791 1.76133 1.26616 1.03983 1.22308 1.41851 1.04884 0.97997 0.89333 1.24708 0.93415 0.93823 0.99300 1.69932 1.37325 1.11055 1.33262 0.86737 0.81555 0.79270 0.84292 1.19196 1.19902 1.15957 0.89800 0.92093 0.91649 0.87736 0.87774 0.89413 0.88893 0.87970 0.88264 0.76054 0.90449 0.90484 0.90912 0.90881 0.76278 0.88308 0.88276 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.41 11.13 59.85 0.67 1.07 16 2 N -0.62 -3.66 2.97 -172.71 -0.51 -4.18 16 3 C 0.52 4.18 8.02 -10.86 -0.09 4.09 16 4 O -0.53 -6.54 17.36 5.56 0.10 -6.44 16 5 C -0.16 -0.78 6.86 -26.74 -0.18 -0.96 16 6 C -0.12 -0.54 6.18 -25.10 -0.16 -0.69 16 7 C 0.15 0.69 2.72 -67.01 -0.18 0.51 16 8 H 0.10 0.54 7.80 -51.93 -0.40 0.13 16 9 C -0.15 -0.54 5.47 -27.88 -0.15 -0.69 16 10 C 0.52 3.10 7.22 -10.98 -0.08 3.02 16 11 O -0.53 -5.02 15.12 5.56 0.08 -4.94 16 12 N -0.73 -3.60 5.56 -60.29 -0.33 -3.94 16 13 C 0.11 0.69 5.79 -4.04 -0.02 0.66 16 14 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 15 N -0.73 -7.87 5.56 -60.29 -0.33 -8.21 16 16 C 0.53 8.63 7.85 -10.98 -0.09 8.55 16 17 O -0.52 -10.37 15.86 5.56 0.09 -10.28 16 18 C -0.12 -2.26 6.16 36.01 0.22 -2.04 16 19 S -0.14 -3.47 18.55 -107.50 -1.99 -5.46 16 20 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 21 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 22 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 23 N -0.88 -26.13 13.97 55.49 0.78 -25.35 16 24 Si 0.86 21.35 27.74 -169.99 -4.72 16.63 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 28 H 0.08 0.48 7.55 -51.93 -0.39 0.09 16 29 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.43 7.06 -51.93 -0.37 0.06 16 35 H 0.10 0.24 8.14 -51.92 -0.42 -0.18 16 36 H 0.10 0.24 8.13 -51.93 -0.42 -0.18 16 37 H 0.40 1.14 8.47 -40.82 -0.35 0.79 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.40 3.22 8.47 -40.82 -0.35 2.88 16 43 H 0.10 1.66 8.14 -51.92 -0.42 1.23 16 44 H 0.10 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 393.88 15.07 5.94 5.94 Total: -1.00 -38.13 393.88 -7.71 -45.84 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -6.93 Total: -2.28 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 0.13 Total: 2.66 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.41 Total: -41.68 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.27 Total: -21.66 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -1.99 Total: -5.46 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.13 -7.71 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491123051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.671 kcal (2) G-P(sol) polarization free energy of solvation -38.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds