Wall clock time and date at job start Wed Apr 1 2020 01:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00228 * 2 1 4 4 C 1.53003 * 109.47008 * 275.50138 * 3 2 1 5 5 H 1.09001 * 109.58158 * 60.00756 * 4 3 2 6 6 C 1.53189 * 109.58570 * 299.72615 * 4 3 2 7 7 C 1.53038 * 109.31116 * 185.58063 * 6 4 3 8 8 C 1.53033 * 109.54269 * 61.36203 * 7 6 4 9 9 C 1.53194 * 109.31165 * 298.63686 * 8 7 6 10 10 N 1.46927 * 109.58584 * 180.29034 * 4 3 2 11 11 C 1.34776 * 120.63038 * 353.39949 * 10 4 3 12 12 O 1.21284 * 120.00103 * 5.61810 * 11 10 4 13 13 C 1.50704 * 120.00030 * 185.62053 * 11 10 4 14 14 S 1.80997 * 109.47369 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99909 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99830 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99903 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47334 * 89.99730 * 19 17 15 21 21 H 1.48499 * 109.47407 * 209.99669 * 19 17 15 22 22 H 1.48499 * 109.47217 * 329.99827 * 19 17 15 23 23 C 1.34779 * 120.00023 * 179.97438 * 2 1 3 24 24 O 1.21347 * 120.00237 * 175.32690 * 23 2 1 25 25 C 1.49446 * 119.99872 * 355.59715 * 23 2 1 26 26 N 1.34780 * 120.00020 * 184.94377 * 25 23 2 27 27 O 1.21354 * 120.00114 * 4.94690 * 25 23 2 28 28 H 1.09001 * 109.47595 * 235.34783 * 1 2 3 29 29 H 1.09004 * 109.47496 * 355.34499 * 1 2 3 30 30 H 1.08994 * 109.47266 * 115.34708 * 1 2 3 31 31 H 1.09001 * 109.47488 * 35.50069 * 3 2 1 32 32 H 1.09000 * 109.47190 * 155.49880 * 3 2 1 33 33 H 1.09005 * 109.49521 * 305.52644 * 6 4 3 34 34 H 1.08999 * 109.49908 * 65.62556 * 6 4 3 35 35 H 1.09003 * 109.45963 * 181.38527 * 7 6 4 36 36 H 1.09004 * 109.45875 * 301.35225 * 7 6 4 37 37 H 1.08999 * 109.50036 * 58.58723 * 8 7 6 38 38 H 1.08997 * 109.50151 * 178.65193 * 8 7 6 39 39 H 1.09002 * 109.58634 * 174.42237 * 9 8 7 40 40 H 1.08997 * 109.58512 * 294.69874 * 9 8 7 41 41 H 1.09000 * 109.46913 * 300.00320 * 13 11 10 42 42 H 1.09003 * 109.47233 * 59.99533 * 13 11 10 43 43 H 0.97002 * 119.99862 * 180.02562 * 18 17 15 44 44 H 0.97001 * 119.99900 * 0.02562 * 26 25 23 45 45 H 0.97003 * 119.99981 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3327 1.7795 -1.4359 5 1 1.3421 1.9332 -1.8638 6 6 3.1013 0.7542 -2.2754 7 6 3.3544 1.3301 -3.6705 8 6 4.2066 2.5960 -3.5549 9 6 3.4504 3.6421 -2.7299 10 7 3.0732 3.0485 -1.4395 11 6 3.4032 3.6543 -0.2817 12 8 3.1798 3.1041 0.7758 13 6 4.0497 5.0155 -0.3010 14 16 4.3677 5.5566 1.3967 15 6 5.1040 7.1267 1.0845 16 1 5.2320 7.4707 0.0688 17 6 5.5203 7.9209 2.1440 18 7 5.3646 7.5014 3.3819 19 14 6.3002 9.5857 1.8131 20 1 5.2432 10.6280 1.7713 21 1 7.2663 9.9036 2.8951 22 1 7.0110 9.5491 0.5098 23 6 2.1388 -1.1672 0.0005 24 8 3.3493 -1.1690 -0.0851 25 6 1.3949 -2.4595 0.1005 26 7 2.0717 -3.6207 0.2014 27 8 0.1814 -2.4634 0.0906 28 1 -0.3634 -0.5843 0.8454 29 1 -0.3634 1.0243 0.0834 30 1 -0.3633 -0.4399 -0.9287 31 1 1.6547 2.0017 0.5968 32 1 3.1890 1.1158 0.4262 33 1 4.0543 0.5319 -1.7952 34 1 2.5141 -0.1601 -2.3602 35 1 3.8797 0.5930 -4.2779 36 1 2.4019 1.5754 -4.1404 37 1 5.1491 2.3564 -3.0627 38 1 4.4065 2.9922 -4.5504 39 1 4.0916 4.5073 -2.5608 40 1 2.5533 3.9515 -3.2660 41 1 4.9909 4.9629 -0.8483 42 1 3.3843 5.7269 -0.7902 43 1 5.6552 8.0566 4.1223 44 1 3.0417 -3.6175 0.2096 45 1 1.5888 -4.4595 0.2659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521163180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:43 Heat of formation + Delta-G solvation = -85.512731 kcal Electronic energy + Delta-G solvation = -28670.435841 eV Core-core repulsion = 24622.114764 eV Total energy + Delta-G solvation = -4048.321076 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.09546 -40.18187 -38.46993 -37.19554 -36.11374 -33.83992 -32.95304 -32.44414 -32.13855 -29.06147 -27.67906 -26.98336 -25.52795 -24.82127 -24.11305 -22.05018 -21.05145 -20.02804 -19.09242 -18.14318 -17.65898 -17.43261 -16.63710 -16.57992 -16.08621 -15.72902 -15.43481 -14.99418 -14.81619 -14.63450 -14.43727 -14.15241 -14.02404 -13.76616 -13.60280 -13.30929 -13.10444 -12.94333 -12.66889 -12.57768 -12.33310 -12.07317 -11.72098 -11.47994 -11.17793 -11.07900 -11.05390 -11.03249 -10.83318 -10.77094 -10.74084 -10.18188 -9.82477 -9.76804 -9.15817 -9.07823 -8.67305 -8.49465 -8.24704 -6.51506 -6.23026 -3.93559 1.24909 2.26493 2.86501 2.95224 3.03527 3.21332 3.24230 3.29119 3.47217 3.64850 4.18795 4.28657 4.53052 4.64644 4.70396 4.87001 5.02584 5.06857 5.12317 5.14604 5.16011 5.32881 5.42795 5.50386 5.52996 5.60845 5.68550 5.75229 5.78868 5.81389 5.83951 5.93266 5.99585 6.09604 6.15324 6.18089 6.26404 6.30909 6.63832 6.70398 7.05396 7.48635 7.56098 7.58380 7.82610 8.33757 8.47550 9.22452 10.84334 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.002725 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.009714 B =10272.148485 C =11286.120046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.585 5.585 3 C 0.118 3.882 4 C 0.135 3.865 5 H 0.069 0.931 6 C -0.125 4.125 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.110 3.890 10 N -0.612 5.612 11 C 0.536 3.464 12 O -0.513 6.513 13 C -0.151 4.151 14 S -0.059 6.059 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.499 3.501 24 O -0.516 6.516 25 C 0.512 3.488 26 N -0.825 5.825 27 O -0.520 6.520 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.067 0.933 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.268 0.732 44 H 0.414 0.586 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.805 -17.940 -14.126 24.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.320 5.320 3 C -0.002 4.002 4 C 0.031 3.969 5 H 0.087 0.913 6 C -0.164 4.164 7 C -0.156 4.156 8 C -0.174 4.174 9 C -0.014 4.014 10 N -0.349 5.349 11 C 0.325 3.675 12 O -0.388 6.388 13 C -0.302 4.302 14 S 0.168 5.832 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.281 3.719 24 O -0.392 6.392 25 C 0.291 3.709 26 N -0.391 5.391 27 O -0.395 6.395 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.244 0.756 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -8.240 -18.472 -12.418 23.734 hybrid contribution 0.961 1.331 -1.567 2.270 sum -7.278 -17.141 -13.985 23.289 Atomic orbital electron populations 1.22030 0.78053 1.02594 1.03308 1.48192 1.08235 1.05957 1.69630 1.22737 1.00252 0.82229 0.94994 1.21591 0.94614 0.83681 0.97029 0.91268 1.21965 1.01680 0.97313 0.95397 1.21511 0.99934 0.97204 0.96916 1.21925 0.99428 0.95847 1.00215 1.21736 0.99603 0.96399 0.83629 1.48167 1.57617 1.22824 1.06303 1.20398 0.77420 0.86874 0.82824 1.90675 1.53002 1.64565 1.30540 1.23580 1.02706 0.95414 1.08457 1.85378 1.79216 1.21171 0.97485 1.22849 1.46384 1.03566 0.95520 0.90963 1.24987 0.95471 0.98670 0.94440 1.70015 1.44564 1.37422 0.98240 0.86175 0.78950 0.82288 0.78129 1.20276 1.20758 1.19703 1.20031 0.87602 0.85148 0.79136 1.90779 1.13292 1.86981 1.48143 1.20285 0.87566 0.86055 0.76985 1.43560 1.12457 1.08008 1.75091 1.90798 1.13431 1.87277 1.48036 0.90455 0.90915 0.91689 0.87152 0.87339 0.90391 0.91865 0.91831 0.92077 0.91178 0.90720 0.89036 0.91467 0.89239 0.89203 0.92180 0.75589 0.75931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.10 59.84 0.54 1.38 16 2 N -0.58 -7.16 2.58 -182.09 -0.47 -7.63 16 3 C 0.12 1.69 3.36 -4.04 -0.01 1.68 16 4 C 0.14 1.69 3.19 -67.60 -0.22 1.48 16 5 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 6 C -0.13 -1.44 4.06 -26.61 -0.11 -1.55 16 7 C -0.12 -1.09 5.88 -26.69 -0.16 -1.25 16 8 C -0.14 -1.28 6.08 -26.61 -0.16 -1.44 16 9 C 0.11 1.18 6.32 -3.69 -0.02 1.15 16 10 N -0.61 -8.45 2.98 -165.19 -0.49 -8.94 16 11 C 0.54 9.64 7.62 -10.98 -0.08 9.55 16 12 O -0.51 -10.64 11.27 5.55 0.06 -10.58 16 13 C -0.15 -2.96 4.57 36.01 0.16 -2.80 16 14 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 15 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 16 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.90 13.22 55.49 0.73 -25.17 16 19 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.50 6.24 6.51 -11.59 -0.08 6.16 16 24 O -0.52 -7.44 14.52 5.50 0.08 -7.36 16 25 C 0.51 5.40 8.07 -11.59 -0.09 5.31 16 26 N -0.83 -5.67 8.87 30.91 0.27 -5.40 16 27 O -0.52 -6.29 14.09 5.49 0.08 -6.22 16 28 H 0.08 0.81 6.78 -51.93 -0.35 0.46 16 29 H 0.07 0.65 7.84 -51.93 -0.41 0.24 16 30 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 31 H 0.11 1.74 6.34 -51.93 -0.33 1.41 16 32 H 0.11 1.92 6.20 -51.93 -0.32 1.59 16 33 H 0.08 1.09 7.59 -51.93 -0.39 0.69 16 34 H 0.06 0.72 6.95 -51.93 -0.36 0.36 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.00 5.97 -51.93 -0.31 0.69 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.64 7.45 -51.92 -0.39 1.26 16 42 H 0.09 1.63 8.13 -51.91 -0.42 1.21 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.41 2.45 8.31 -40.82 -0.34 2.11 16 45 H 0.41 1.88 8.93 -40.82 -0.36 1.52 16 LS Contribution 371.86 15.07 5.60 5.60 Total: -1.00 -34.48 371.86 -7.86 -42.33 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.47 Total: 4.00 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.02 Total: 6.96 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.05 Total: -47.15 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: 0.22 Total: -24.15 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.48 -7.86 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521163180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.180 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds