Wall clock time and date at job start Wed Apr 1 2020 01:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46499 * 120.00228 * 2 1 4 4 C 1.53003 * 109.47008 * 275.50138 * 3 2 1 5 5 H 1.09001 * 109.58158 * 60.00756 * 4 3 2 6 6 C 1.53189 * 109.58570 * 299.72615 * 4 3 2 7 7 C 1.53038 * 109.31116 * 185.58063 * 6 4 3 8 8 C 1.53033 * 109.54269 * 61.36203 * 7 6 4 9 9 C 1.53194 * 109.31165 * 298.63686 * 8 7 6 10 10 N 1.46927 * 109.58584 * 180.29034 * 4 3 2 11 11 C 1.34776 * 120.63038 * 353.39949 * 10 4 3 12 12 O 1.21284 * 120.00103 * 5.61810 * 11 10 4 13 13 C 1.50704 * 120.00030 * 185.62053 * 11 10 4 14 14 S 1.80997 * 109.47369 * 179.97438 * 13 11 10 15 15 C 1.76197 * 99.99909 * 179.97438 * 14 13 11 16 16 H 1.07998 * 119.99976 * 359.97438 * 15 14 13 17 17 C 1.38802 * 119.99830 * 180.02562 * 15 14 13 18 18 N 1.31630 * 119.99903 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00004 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47334 * 89.99730 * 19 17 15 21 21 H 1.48499 * 109.47407 * 209.99669 * 19 17 15 22 22 H 1.48499 * 109.47217 * 329.99827 * 19 17 15 23 23 C 1.34779 * 120.00023 * 179.97438 * 2 1 3 24 24 O 1.21347 * 120.00237 * 175.32690 * 23 2 1 25 25 C 1.49446 * 119.99872 * 355.59715 * 23 2 1 26 26 N 1.34780 * 120.00020 * 184.94377 * 25 23 2 27 27 O 1.21354 * 120.00114 * 4.94690 * 25 23 2 28 28 H 1.09001 * 109.47595 * 235.34783 * 1 2 3 29 29 H 1.09004 * 109.47496 * 355.34499 * 1 2 3 30 30 H 1.08994 * 109.47266 * 115.34708 * 1 2 3 31 31 H 1.09001 * 109.47488 * 35.50069 * 3 2 1 32 32 H 1.09000 * 109.47190 * 155.49880 * 3 2 1 33 33 H 1.09005 * 109.49521 * 305.52644 * 6 4 3 34 34 H 1.08999 * 109.49908 * 65.62556 * 6 4 3 35 35 H 1.09003 * 109.45963 * 181.38527 * 7 6 4 36 36 H 1.09004 * 109.45875 * 301.35225 * 7 6 4 37 37 H 1.08999 * 109.50036 * 58.58723 * 8 7 6 38 38 H 1.08997 * 109.50151 * 178.65193 * 8 7 6 39 39 H 1.09002 * 109.58634 * 174.42237 * 9 8 7 40 40 H 1.08997 * 109.58512 * 294.69874 * 9 8 7 41 41 H 1.09000 * 109.46913 * 300.00320 * 13 11 10 42 42 H 1.09003 * 109.47233 * 59.99533 * 13 11 10 43 43 H 0.97002 * 119.99862 * 180.02562 * 18 17 15 44 44 H 0.97001 * 119.99900 * 0.02562 * 26 25 23 45 45 H 0.97003 * 119.99981 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3327 1.7795 -1.4359 5 1 1.3421 1.9332 -1.8638 6 6 3.1013 0.7542 -2.2754 7 6 3.3544 1.3301 -3.6705 8 6 4.2066 2.5960 -3.5549 9 6 3.4504 3.6421 -2.7299 10 7 3.0732 3.0485 -1.4395 11 6 3.4032 3.6543 -0.2817 12 8 3.1798 3.1041 0.7758 13 6 4.0497 5.0155 -0.3010 14 16 4.3677 5.5566 1.3967 15 6 5.1040 7.1267 1.0845 16 1 5.2320 7.4707 0.0688 17 6 5.5203 7.9209 2.1440 18 7 5.3646 7.5014 3.3819 19 14 6.3002 9.5857 1.8131 20 1 5.2432 10.6280 1.7713 21 1 7.2663 9.9036 2.8951 22 1 7.0110 9.5491 0.5098 23 6 2.1388 -1.1672 0.0005 24 8 3.3493 -1.1690 -0.0851 25 6 1.3949 -2.4595 0.1005 26 7 2.0717 -3.6207 0.2014 27 8 0.1814 -2.4634 0.0906 28 1 -0.3634 -0.5843 0.8454 29 1 -0.3634 1.0243 0.0834 30 1 -0.3633 -0.4399 -0.9287 31 1 1.6547 2.0017 0.5968 32 1 3.1890 1.1158 0.4262 33 1 4.0543 0.5319 -1.7952 34 1 2.5141 -0.1601 -2.3602 35 1 3.8797 0.5930 -4.2779 36 1 2.4019 1.5754 -4.1404 37 1 5.1491 2.3564 -3.0627 38 1 4.4065 2.9922 -4.5504 39 1 4.0916 4.5073 -2.5608 40 1 2.5533 3.9515 -3.2660 41 1 4.9909 4.9629 -0.8483 42 1 3.3843 5.7269 -0.7902 43 1 5.6552 8.0566 4.1223 44 1 3.0417 -3.6175 0.2096 45 1 1.5888 -4.4595 0.2659 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521163180.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:42 Heat of formation + Delta-G solvation = -111.568055 kcal Electronic energy + Delta-G solvation = -28671.565684 eV Core-core repulsion = 24622.114764 eV Total energy + Delta-G solvation = -4049.450920 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.12767 -41.28741 -39.44553 -38.36187 -37.09796 -34.61479 -34.57771 -34.06663 -33.12361 -30.47416 -28.70613 -27.90383 -27.64770 -25.84089 -25.03843 -23.04137 -22.07510 -20.93446 -20.42725 -19.43570 -18.98929 -18.43857 -17.82130 -17.52779 -17.09189 -16.91016 -16.86312 -16.63831 -16.05625 -15.81230 -15.51689 -15.29444 -15.04437 -14.88643 -14.78650 -14.47964 -14.25320 -14.13773 -13.99810 -13.53216 -13.52417 -13.32427 -13.13892 -12.89616 -12.75210 -12.59169 -12.44964 -12.16549 -11.98785 -11.71311 -11.66784 -11.60245 -11.13379 -10.90324 -10.82261 -10.34917 -10.24533 -9.76035 -9.62823 -8.64968 -8.33917 -6.11252 0.33007 1.22700 1.35167 1.42630 1.48008 1.53838 1.57692 2.04616 2.13915 2.28121 2.68924 3.00379 3.25230 3.51652 3.54366 3.71522 3.82161 3.94290 4.03933 4.18190 4.21750 4.27359 4.28501 4.40582 4.46928 4.54351 4.66754 4.71146 4.84761 4.88383 4.94402 4.98789 5.03743 5.13945 5.17552 5.24270 5.42696 5.43685 5.53769 5.61066 5.90943 6.15430 6.20404 6.26949 6.69104 7.01119 7.07636 7.12652 8.75120 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016793 B = 0.002725 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.009714 B =10272.148485 C =11286.120046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.585 5.585 3 C 0.130 3.870 4 C 0.137 3.863 5 H 0.095 0.905 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.131 4.131 9 C 0.100 3.900 10 N -0.601 5.601 11 C 0.532 3.468 12 O -0.550 6.550 13 C -0.124 4.124 14 S -0.147 6.147 15 C -0.544 4.544 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 0.997 3.003 20 H -0.267 1.267 21 H -0.279 1.279 22 H -0.258 1.258 23 C 0.493 3.507 24 O -0.541 6.541 25 C 0.516 3.484 26 N -0.802 5.802 27 O -0.536 6.536 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.270 0.730 44 H 0.420 0.580 45 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.377 -17.823 -17.356 26.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.320 5.320 3 C 0.008 3.992 4 C 0.033 3.967 5 H 0.113 0.887 6 C -0.155 4.155 7 C -0.151 4.151 8 C -0.169 4.169 9 C -0.022 4.022 10 N -0.336 5.336 11 C 0.321 3.679 12 O -0.428 6.428 13 C -0.275 4.275 14 S 0.080 5.920 15 C -0.692 4.692 16 H 0.100 0.900 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.819 3.181 20 H -0.193 1.193 21 H -0.205 1.205 22 H -0.182 1.182 23 C 0.276 3.724 24 O -0.419 6.419 25 C 0.294 3.706 26 N -0.369 5.369 27 O -0.414 6.414 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.122 0.878 42 H 0.127 0.873 43 H 0.079 0.921 44 H 0.252 0.748 45 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -8.821 -18.405 -15.701 25.751 hybrid contribution 1.111 1.153 -0.615 1.715 sum -7.710 -17.252 -16.316 24.965 Atomic orbital electron populations 1.22120 0.76428 1.03377 1.03753 1.48194 1.09115 1.05306 1.69351 1.22271 0.98079 0.82816 0.95991 1.21697 0.95768 0.83220 0.95995 0.88679 1.21852 0.99892 0.97177 0.96534 1.21515 1.01096 0.97224 0.95231 1.21916 0.98288 0.95560 1.01180 1.22088 1.01144 0.96708 0.82228 1.48153 1.56413 1.22806 1.06225 1.20167 0.77686 0.86464 0.83629 1.90690 1.54664 1.65216 1.32272 1.23389 1.04039 0.96814 1.03232 1.85548 1.79714 1.22136 1.04616 1.23188 1.46224 1.03670 0.96128 0.89957 1.26110 0.95890 1.03114 0.94037 1.70183 1.45917 1.39249 0.99428 0.84973 0.78033 0.76646 0.78460 1.19261 1.20455 1.18186 1.20471 0.87463 0.85965 0.78524 1.90768 1.14423 1.87445 1.49283 1.19898 0.87201 0.86017 0.77473 1.43413 1.12857 1.07538 1.73128 1.90796 1.13800 1.87365 1.49401 0.90898 0.89817 0.90429 0.88994 0.91327 0.93439 0.91583 0.90692 0.90026 0.93050 0.87772 0.89180 0.88572 0.87845 0.87318 0.92055 0.74800 0.74205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.64 9.10 127.77 1.16 2.80 16 2 N -0.59 -14.46 2.58 -848.36 -2.19 -16.65 16 3 C 0.13 3.86 3.36 86.38 0.29 4.15 16 4 C 0.14 3.29 3.19 44.97 0.14 3.44 16 5 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 6 C -0.12 -2.53 4.06 30.67 0.12 -2.41 16 7 C -0.11 -1.74 5.88 30.62 0.18 -1.56 16 8 C -0.13 -2.07 6.08 30.67 0.19 -1.88 16 9 C 0.10 1.86 6.32 86.36 0.55 2.40 16 10 N -0.60 -15.96 2.98 -794.93 -2.37 -18.32 16 11 C 0.53 19.42 7.62 87.66 0.67 20.09 16 12 O -0.55 -24.07 11.27 -3.04 -0.03 -24.11 16 13 C -0.12 -4.84 4.57 71.24 0.33 -4.52 16 14 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 15 C -0.54 -30.78 9.50 67.96 0.65 -30.14 16 16 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 19 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 20 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 21 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 23 C 0.49 12.43 6.51 87.27 0.57 13.00 16 24 O -0.54 -16.12 14.52 -3.24 -0.05 -16.17 16 25 C 0.52 10.47 8.07 87.27 0.70 11.18 16 26 N -0.80 -10.01 8.87 -174.49 -1.55 -11.56 16 27 O -0.54 -12.40 14.09 -3.26 -0.05 -12.44 16 28 H 0.07 1.50 6.78 -2.39 -0.02 1.48 16 29 H 0.08 1.41 7.84 -2.39 -0.02 1.39 16 30 H 0.08 1.32 7.65 -2.39 -0.02 1.31 16 31 H 0.09 3.07 6.34 -2.39 -0.02 3.05 16 32 H 0.07 2.61 6.20 -2.39 -0.01 2.60 16 33 H 0.05 1.34 7.59 -2.38 -0.02 1.32 16 34 H 0.07 1.41 6.95 -2.39 -0.02 1.39 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.72 5.97 -2.39 -0.01 1.71 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.10 3.74 7.45 -2.39 -0.02 3.72 16 42 H 0.11 3.83 8.13 -2.39 -0.02 3.81 16 43 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.42 4.53 8.31 -92.71 -0.77 3.76 16 45 H 0.42 3.13 8.93 -92.71 -0.83 2.31 16 Total: -1.00 -78.72 371.86 0.37 -78.35 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -0.56 Total: 22.56 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 6.01 Total: 17.76 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -5.82 Total: -102.09 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.13 Total: -52.72 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -78.72 0.37 -78.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521163180.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.222 kcal (2) G-P(sol) polarization free energy of solvation -78.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds