Wall clock time and date at job start Wed Apr 1 2020 02:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99938 * 2 1 4 4 O 1.21282 * 119.99741 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99791 * 179.97438 * 3 2 1 6 6 C 1.50708 * 109.46971 * 180.02562 * 5 3 2 7 7 O 1.21280 * 119.99664 * 0.02562 * 6 5 3 8 8 N 1.34773 * 119.99820 * 180.02562 * 6 5 3 9 9 C 1.46501 * 119.99732 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.52419 * 34.92268 * 9 8 6 11 11 C 1.53046 * 109.49630 * 155.00069 * 9 8 6 12 12 C 1.53039 * 109.52798 * 181.31171 * 11 9 8 13 13 C 1.53200 * 109.31160 * 298.64112 * 12 11 9 14 14 N 1.46931 * 108.77279 * 54.63574 * 13 12 11 15 15 C 1.34773 * 120.63029 * 126.41292 * 14 13 12 16 16 O 1.21283 * 119.99790 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99929 * 359.97438 * 15 14 13 18 18 S 1.81001 * 109.47033 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99976 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00131 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99785 * 179.97438 * 19 18 17 22 22 N 1.31628 * 120.00120 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99691 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47060 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.46809 * 120.00257 * 23 21 19 26 26 H 1.48507 * 109.46931 * 240.00234 * 23 21 19 27 27 C 1.46928 * 118.73792 * 306.39072 * 14 13 12 28 28 H 1.09001 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47620 * 300.00187 * 1 2 3 30 30 H 1.09004 * 109.47103 * 60.00051 * 1 2 3 31 31 H 0.96995 * 120.00117 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47542 * 59.99990 * 5 3 2 33 33 H 1.09004 * 109.47328 * 300.00037 * 5 3 2 34 34 H 0.97005 * 120.00326 * 359.97438 * 8 6 5 35 35 H 1.09002 * 109.46115 * 61.29624 * 11 9 8 36 36 H 1.09004 * 109.45806 * 301.32509 * 11 9 8 37 37 H 1.08997 * 109.49901 * 58.58690 * 12 11 9 38 38 H 1.08996 * 109.49878 * 178.65713 * 12 11 9 39 39 H 1.08998 * 109.58358 * 174.41666 * 13 12 11 40 40 H 1.08999 * 109.58464 * 294.84968 * 13 12 11 41 41 H 1.09000 * 109.47307 * 299.99904 * 17 15 14 42 42 H 1.09001 * 109.47034 * 59.99979 * 17 15 14 43 43 H 0.97008 * 119.99551 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58766 * 173.40097 * 27 14 13 45 45 H 1.09002 * 109.58364 * 293.68193 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5324 2.2175 -0.0005 5 6 3.6458 1.1672 0.0006 6 6 4.1482 2.5881 0.0011 7 8 3.3600 3.5098 0.0015 8 7 5.4732 2.8343 0.0011 9 6 5.9615 4.2155 0.0011 10 1 5.2888 4.8397 0.5891 11 6 7.3645 4.2613 0.6108 12 6 7.8622 5.7082 0.6411 13 6 7.9391 6.2476 -0.7908 14 7 6.6290 6.0733 -1.4327 15 6 6.0010 7.1187 -2.0065 16 8 4.9201 6.9617 -2.5336 17 6 6.6420 8.4825 -1.9931 18 16 5.5617 9.6651 -2.8361 19 6 6.5284 11.1297 -2.6771 20 1 7.4817 11.0952 -2.1709 21 6 6.0646 12.3278 -3.2026 22 7 4.9024 12.3699 -3.8192 23 14 7.0891 13.8806 -3.0334 24 1 8.3443 13.5685 -2.3040 25 1 7.4187 14.4055 -4.3828 26 1 6.3188 14.9022 -2.2795 27 6 6.0169 4.7376 -1.4377 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8400 0.0004 32 1 4.0095 0.6532 -0.8891 33 1 4.0088 0.6535 0.8908 34 1 6.1036 2.0970 0.0012 35 1 8.0423 3.6567 0.0082 36 1 7.3320 3.8671 1.6266 37 1 7.1715 6.3184 1.2230 38 1 8.8515 5.7432 1.0972 39 1 8.1974 7.3063 -0.7690 40 1 8.6958 5.6960 -1.3488 41 1 6.7961 8.8014 -0.9623 42 1 7.6022 8.4378 -2.5070 43 1 4.5781 13.2073 -4.1861 44 1 5.0069 4.8001 -1.8429 45 1 6.6155 4.0637 -2.0506 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001523304580.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:55 Heat of formation + Delta-G solvation = -139.915266 kcal Electronic energy + Delta-G solvation = -27359.610090 eV Core-core repulsion = 23308.929943 eV Total energy + Delta-G solvation = -4050.680147 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.61979 -41.01313 -39.81588 -38.35549 -35.81391 -35.44791 -34.60395 -33.42393 -32.43358 -31.44069 -29.76653 -27.72334 -27.26511 -26.22080 -24.25177 -22.36889 -21.94301 -21.21669 -20.41658 -19.50318 -18.42904 -18.32079 -18.02983 -17.21541 -16.92261 -16.90810 -16.82576 -16.58730 -16.27698 -15.83913 -15.69243 -15.27803 -15.00703 -14.63534 -14.52843 -14.48130 -14.30397 -14.19732 -13.97821 -13.66903 -13.49503 -13.18303 -13.07864 -12.92420 -12.90303 -12.61756 -12.59907 -12.07257 -11.98004 -11.70981 -11.63984 -11.23341 -11.17548 -10.97231 -10.54649 -10.34500 -10.27164 -10.10122 -9.60965 -8.71306 -8.35834 -6.15751 1.21604 1.41133 1.42248 1.50919 1.56310 1.63937 1.73879 1.81561 2.13552 2.25714 2.59492 2.98168 3.22862 3.54307 3.59430 3.76177 3.88999 3.94539 4.01958 4.11730 4.20546 4.22517 4.38904 4.40961 4.42195 4.50980 4.55000 4.57937 4.60906 4.77811 4.80358 4.93420 4.95671 5.06175 5.16001 5.29133 5.40068 5.40870 5.47098 5.60508 6.18461 6.24508 6.58964 6.64981 7.04543 7.10674 7.32952 7.45673 8.74002 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016399 B = 0.002186 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.040864 B =12806.554577 C =14197.695192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.721 5.721 3 C 0.493 3.507 4 O -0.567 6.567 5 C -0.147 4.147 6 C 0.496 3.504 7 O -0.562 6.562 8 N -0.705 5.705 9 C 0.139 3.861 10 H 0.045 0.955 11 C -0.111 4.111 12 C -0.130 4.130 13 C 0.093 3.907 14 N -0.605 5.605 15 C 0.526 3.474 16 O -0.573 6.573 17 C -0.117 4.117 18 S -0.164 6.164 19 C -0.542 4.542 20 H 0.087 0.913 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 1.004 2.996 24 H -0.253 1.253 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.105 3.895 28 H 0.117 0.883 29 H 0.041 0.959 30 H 0.038 0.962 31 H 0.424 0.576 32 H 0.167 0.833 33 H 0.172 0.828 34 H 0.425 0.575 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.271 0.729 44 H 0.041 0.959 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 -34.127 13.244 38.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.376 5.376 3 C 0.279 3.721 4 O -0.443 6.443 5 C -0.188 4.188 6 C 0.282 3.718 7 O -0.438 6.438 8 N -0.360 5.360 9 C 0.033 3.967 10 H 0.064 0.936 11 C -0.149 4.149 12 C -0.168 4.168 13 C -0.028 4.028 14 N -0.340 5.340 15 C 0.314 3.686 16 O -0.451 6.451 17 C -0.268 4.268 18 S 0.063 5.937 19 C -0.690 4.690 20 H 0.105 0.895 21 C -0.195 4.195 22 N -0.550 5.550 23 Si 0.825 3.175 24 H -0.176 1.176 25 H -0.198 1.198 26 H -0.201 1.201 27 C -0.019 4.019 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.261 0.739 32 H 0.184 0.816 33 H 0.190 0.810 34 H 0.265 0.735 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.138 0.862 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.060 0.940 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.841 -32.886 12.395 36.008 hybrid contribution 1.081 0.954 0.248 1.463 sum 8.922 -31.932 12.643 35.484 Atomic orbital electron populations 1.21595 0.79600 1.04143 1.00701 1.45640 1.07870 1.08479 1.75562 1.20901 0.91154 0.83797 0.76249 1.90916 1.71114 1.33347 1.48972 1.21640 0.91713 0.94533 1.10949 1.21011 0.82726 0.92154 0.75952 1.90952 1.56364 1.48025 1.48423 1.45688 1.06476 1.08175 1.75709 1.21080 0.97638 0.83454 0.94558 0.93618 1.21780 0.92406 0.97803 1.02879 1.21929 1.03888 0.95802 0.95210 1.22228 0.82598 1.03653 0.94308 1.48068 1.21661 1.07583 1.56691 1.20331 0.84495 0.86302 0.77490 1.90705 1.23155 1.84968 1.46313 1.23335 1.03585 0.94383 1.05546 1.85777 1.30264 1.03440 1.74201 1.23223 1.07860 0.94557 1.43331 0.89540 1.26233 0.96660 1.02881 0.93770 1.70222 1.20425 1.28287 1.36107 0.84832 0.78188 0.76059 0.78379 1.17592 1.19824 1.20055 1.21938 0.98487 0.83171 0.98307 0.86453 0.94004 0.94354 0.73875 0.81573 0.81037 0.73540 0.87557 0.88834 0.93232 0.86200 0.89354 0.87777 0.87417 0.86768 0.92020 0.93995 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 10.70 127.77 1.37 2.39 16 2 N -0.72 -7.72 5.71 -484.53 -2.77 -10.49 16 3 C 0.49 10.00 7.82 87.65 0.69 10.68 16 4 O -0.57 -20.80 14.18 20.40 0.29 -20.51 16 5 C -0.15 -1.38 6.19 29.10 0.18 -1.20 16 6 C 0.50 10.98 7.79 87.66 0.68 11.67 16 7 O -0.56 -22.24 13.84 20.41 0.28 -21.96 16 8 N -0.70 -9.78 5.08 -442.21 -2.25 -12.02 16 9 C 0.14 2.85 2.60 45.06 0.12 2.97 16 10 H 0.05 1.40 7.58 -2.39 -0.02 1.39 16 11 C -0.11 -1.09 5.36 30.62 0.16 -0.93 16 12 C -0.13 -1.67 6.08 30.67 0.19 -1.48 16 13 C 0.09 1.69 6.34 86.36 0.55 2.24 16 14 N -0.61 -18.11 2.97 -818.94 -2.43 -20.54 16 15 C 0.53 22.55 7.72 87.66 0.68 23.22 16 16 O -0.57 -31.26 15.28 -3.04 -0.05 -31.31 16 17 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 18 S -0.16 -9.76 20.57 -56.49 -1.16 -10.93 16 19 C -0.54 -32.07 9.50 67.95 0.65 -31.42 16 20 H 0.09 4.69 7.80 -2.91 -0.02 4.67 16 21 C 0.01 0.52 5.49 84.86 0.47 0.99 16 22 N -0.91 -58.45 13.22 21.65 0.29 -58.16 16 23 Si 1.00 44.80 29.55 68.60 2.03 46.83 16 24 H -0.25 -10.36 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 27 C 0.10 2.86 6.01 86.35 0.52 3.38 16 28 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.42 0.24 8.83 -92.71 -0.82 -0.58 16 32 H 0.17 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.17 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.43 1.13 8.60 -92.70 -0.80 0.33 16 35 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 38 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 1.71 5.93 -2.39 -0.01 1.69 16 40 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.11 4.22 7.69 -2.39 -0.02 4.20 16 42 H 0.11 4.32 7.94 -2.40 -0.02 4.30 16 43 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 44 H 0.04 1.64 7.01 -2.39 -0.02 1.63 16 45 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -113.25 387.09 0.20 -113.05 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -0.59 Total: 8.28 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 6.56 Total: 17.76 kcal Atomic # 7 Polarization: -94.06 SS G_CDS: -7.16 Total: -101.22 kcal Atomic # 8 Polarization: -74.31 SS G_CDS: 0.53 Total: -73.78 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -9.76 SS G_CDS: -1.16 Total: -10.93 kcal Total: -113.25 0.20 -113.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001523304580.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.860 kcal (2) G-P(sol) polarization free energy of solvation -113.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -113.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds