Wall clock time and date at job start Wed Apr 1 2020 02:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46501 * 119.99843 * 2 1 4 4 C 1.34779 * 120.00116 * 180.02562 * 2 1 3 5 5 O 1.21272 * 119.99919 * 359.97438 * 4 2 1 6 6 C 1.50700 * 119.99948 * 179.97438 * 4 2 1 7 7 C 1.50696 * 109.47162 * 179.97438 * 6 4 2 8 8 O 1.21286 * 119.99811 * 359.97438 * 7 6 4 9 9 N 1.34784 * 120.00077 * 180.02562 * 7 6 4 10 10 C 1.46496 * 119.99871 * 179.97438 * 9 7 6 11 11 H 1.09000 * 112.84838 * 336.19694 * 10 9 7 12 12 C 1.53778 * 113.61433 * 107.50129 * 10 9 7 13 13 C 1.53783 * 87.08225 * 139.97916 * 12 10 9 14 14 H 1.08994 * 113.69164 * 220.00770 * 13 12 10 15 15 N 1.46502 * 113.61287 * 89.11685 * 13 12 10 16 16 C 1.34776 * 119.99975 * 107.50257 * 15 13 12 17 17 O 1.21278 * 119.99992 * 0.02562 * 16 15 13 18 18 C 1.50703 * 119.99821 * 180.02562 * 16 15 13 19 19 S 1.80998 * 109.46970 * 180.02562 * 18 16 15 20 20 C 1.76199 * 100.00052 * 179.97438 * 19 18 16 21 21 H 1.07990 * 119.99886 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99752 * 180.02562 * 20 19 18 23 23 N 1.31633 * 120.00370 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99801 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 269.99984 * 24 22 20 26 26 H 1.48503 * 109.47399 * 29.99474 * 24 22 20 27 27 H 1.48498 * 109.47295 * 150.00081 * 24 22 20 28 28 C 1.53778 * 87.08085 * 334.56939 * 13 12 10 29 29 H 1.09000 * 109.46950 * 269.99651 * 1 2 3 30 30 H 1.08997 * 109.47072 * 29.99981 * 1 2 3 31 31 H 1.09002 * 109.46830 * 149.99935 * 1 2 3 32 32 H 1.09001 * 109.47210 * 240.00299 * 3 2 1 33 33 H 1.08995 * 109.46939 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.47318 * 120.00495 * 3 2 1 35 35 H 1.09004 * 109.46985 * 59.99468 * 6 4 2 36 36 H 1.09000 * 109.47384 * 299.99782 * 6 4 2 37 37 H 0.96995 * 119.99770 * 0.02562 * 9 7 6 38 38 H 1.08998 * 113.61663 * 25.43520 * 12 10 9 39 39 H 1.08998 * 113.61902 * 254.53139 * 12 10 9 40 40 H 0.97006 * 119.99942 * 287.50355 * 15 13 12 41 41 H 1.08993 * 109.47027 * 60.00415 * 18 16 15 42 42 H 1.09001 * 109.47164 * 300.00041 * 18 16 15 43 43 H 0.97000 * 119.99520 * 359.97438 * 23 22 20 44 44 H 1.09000 * 113.61963 * 139.98081 * 28 13 12 45 45 H 1.08999 * 113.61497 * 270.88605 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5326 -2.2175 -0.0005 6 6 3.6459 -1.1672 -0.0011 7 6 4.1483 -2.5879 -0.0010 8 8 3.3601 -3.5098 0.0000 9 7 5.4734 -2.8342 -0.0009 10 6 5.9618 -4.2154 -0.0002 11 1 5.2364 -4.9205 0.4056 12 6 6.5665 -4.6556 -1.3438 13 6 7.6495 -5.3821 -0.5288 14 1 8.6491 -5.2973 -0.9550 15 7 7.2952 -6.7599 -0.1789 16 6 7.9077 -7.7903 -0.7950 17 8 8.7524 -7.5770 -1.6387 18 6 7.5428 -9.2076 -0.4356 19 16 8.5312 -10.3550 -1.4268 20 6 7.9183 -11.8910 -0.8189 21 1 7.1547 -11.9034 -0.0554 22 6 8.4176 -13.0849 -1.3207 23 7 9.3486 -13.0697 -2.2511 24 14 7.7672 -14.7133 -0.6768 25 1 8.5838 -15.1478 0.4850 26 1 6.3531 -14.5493 -0.2541 27 1 7.8477 -15.7374 -1.7491 28 6 7.3711 -4.3702 0.5952 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 2.8241 1.3266 -0.8900 33 1 1.4891 2.0972 -0.0005 34 1 2.8242 1.3265 0.8899 35 1 4.0096 -0.6534 0.8888 36 1 4.0089 -0.6532 -0.8911 37 1 6.1037 -2.0969 -0.0006 38 1 6.9509 -3.8290 -1.9414 39 1 5.9239 -5.3275 -1.9128 40 1 6.6198 -6.9306 0.4961 41 1 6.4843 -9.3724 -0.6365 42 1 7.7426 -9.3771 0.6225 43 1 9.6855 -12.2241 -2.5863 44 1 7.3780 -4.8116 1.5918 45 1 7.9754 -3.4655 0.5278 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001578448206.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:08 Heat of formation + Delta-G solvation = -82.203468 kcal Electronic energy + Delta-G solvation = -26372.739662 eV Core-core repulsion = 22324.562086 eV Total energy + Delta-G solvation = -4048.177576 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92490 -40.20409 -39.02961 -37.85245 -35.91006 -34.24622 -32.67699 -32.50558 -31.26624 -29.16397 -28.33616 -26.42251 -26.03891 -24.90227 -24.35682 -21.33134 -20.98824 -19.94677 -19.45811 -18.33465 -17.93100 -17.18910 -16.74714 -16.69146 -16.30824 -16.12604 -15.85826 -15.32318 -15.00863 -14.68989 -14.15464 -13.93618 -13.81945 -13.68613 -13.57507 -13.32520 -13.27229 -13.20758 -12.97065 -12.82130 -12.50848 -12.46100 -12.36223 -12.31193 -11.98595 -11.75854 -11.08737 -10.88813 -10.80928 -10.46773 -10.16841 -9.73328 -9.57540 -9.52341 -9.33676 -9.17951 -9.01104 -8.94125 -8.20748 -6.65283 -6.60482 -3.98177 2.18148 2.29847 2.38916 2.88667 2.94998 2.95989 3.36514 3.41497 3.53443 3.59996 3.89564 4.10880 4.26612 4.28744 4.35704 4.43345 4.56106 4.64853 4.67067 4.74440 4.76271 4.85743 5.01736 5.02127 5.09551 5.24388 5.31295 5.32564 5.36585 5.42643 5.57835 5.61581 5.78397 5.81976 5.88824 5.92370 6.04226 6.18089 6.59277 6.78707 7.14899 7.59891 7.75365 7.95099 7.99045 8.49561 8.52176 9.28933 10.83575 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021927 B = 0.001626 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.661764 B =17214.760268 C =18157.254840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.630 5.630 3 C 0.078 3.922 4 C 0.511 3.489 5 O -0.489 6.489 6 C -0.163 4.163 7 C 0.510 3.490 8 O -0.492 6.492 9 N -0.723 5.723 10 C 0.124 3.876 11 H 0.115 0.885 12 C -0.165 4.165 13 C 0.128 3.872 14 H 0.109 0.891 15 N -0.721 5.721 16 C 0.535 3.465 17 O -0.516 6.516 18 C -0.132 4.132 19 S -0.116 6.116 20 C -0.608 4.608 21 H 0.066 0.934 22 C 0.035 3.965 23 N -0.885 5.885 24 Si 1.087 2.913 25 H -0.284 1.284 26 H -0.287 1.287 27 H -0.280 1.280 28 C -0.152 4.152 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.399 0.601 38 H 0.092 0.908 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.278 0.722 44 H 0.081 0.919 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.776 35.302 8.035 38.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.367 5.367 3 C -0.065 4.065 4 C 0.296 3.704 5 O -0.360 6.360 6 C -0.206 4.206 7 C 0.293 3.707 8 O -0.363 6.363 9 N -0.376 5.376 10 C 0.019 3.981 11 H 0.133 0.867 12 C -0.205 4.205 13 C 0.021 3.979 14 H 0.127 0.873 15 N -0.375 5.375 16 C 0.321 3.679 17 O -0.390 6.390 18 C -0.283 4.283 19 S 0.111 5.889 20 C -0.756 4.756 21 H 0.085 0.915 22 C -0.175 4.175 23 N -0.519 5.519 24 Si 0.913 3.087 25 H -0.211 1.211 26 H -0.213 1.213 27 H -0.205 1.205 28 C -0.191 4.191 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.233 0.767 38 H 0.111 0.889 39 H 0.097 0.903 40 H 0.235 0.765 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.100 0.900 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.156 32.731 6.456 35.178 hybrid contribution -1.230 1.997 1.598 2.838 sum -12.386 34.728 8.054 37.740 Atomic orbital electron populations 1.21659 0.78846 1.03224 1.01905 1.47783 1.07217 1.06165 1.75504 1.21816 0.97504 0.85452 1.01741 1.20015 0.89263 0.83567 0.77555 1.90887 1.69271 1.30060 1.45805 1.21619 0.94955 0.97562 1.06478 1.20021 0.82655 0.90625 0.77362 1.90893 1.54391 1.45337 1.45686 1.45954 1.06628 1.08547 1.76476 1.22635 0.94773 0.83536 0.97153 0.86674 1.23961 0.98569 1.00717 0.97263 1.21542 0.99719 0.80963 0.95669 0.87300 1.45698 1.43563 1.04594 1.43599 1.20304 0.80570 0.86367 0.80638 1.90696 1.31609 1.85270 1.31430 1.23327 1.05371 0.94309 1.05302 1.84794 1.52422 0.99043 1.52677 1.23741 1.29873 0.92092 1.29867 0.91534 1.26054 0.94592 1.02316 0.94536 1.70772 1.25256 1.30590 1.25284 0.83289 0.75450 0.73886 0.76060 1.21060 1.21282 1.20508 1.23745 0.95861 0.99961 0.99553 0.92757 0.91215 0.90417 0.91979 0.90264 0.91990 0.86152 0.86119 0.76694 0.88936 0.90333 0.76545 0.88808 0.88847 0.90980 0.89988 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.41 59.85 0.62 1.10 16 2 N -0.63 -3.78 3.27 -189.52 -0.62 -4.40 16 3 C 0.08 0.12 9.74 59.85 0.58 0.71 16 4 C 0.51 4.74 7.67 -10.98 -0.08 4.66 16 5 O -0.49 -7.35 13.76 -18.95 -0.26 -7.61 16 6 C -0.16 -0.88 5.00 -29.04 -0.15 -1.02 16 7 C 0.51 4.89 7.82 -10.98 -0.09 4.80 16 8 O -0.49 -7.66 13.78 -18.96 -0.26 -7.92 16 9 N -0.72 -4.84 5.36 -53.02 -0.28 -5.13 16 10 C 0.12 1.07 4.12 -67.12 -0.28 0.79 16 11 H 0.12 1.25 7.46 -51.93 -0.39 0.86 16 12 C -0.16 -1.65 7.68 -25.92 -0.20 -1.85 16 13 C 0.13 1.39 4.32 -67.12 -0.29 1.10 16 14 H 0.11 1.35 7.46 -51.93 -0.39 0.96 16 15 N -0.72 -9.51 5.26 -53.02 -0.28 -9.79 16 16 C 0.53 9.94 7.85 -10.98 -0.09 9.86 16 17 O -0.52 -11.56 15.46 5.56 0.09 -11.47 16 18 C -0.13 -2.71 6.16 36.01 0.22 -2.49 16 19 S -0.12 -3.15 19.60 -107.50 -2.11 -5.26 16 20 C -0.61 -17.80 9.50 30.94 0.29 -17.51 16 21 H 0.07 1.87 7.80 -52.49 -0.41 1.46 16 22 C 0.04 1.04 5.49 -17.43 -0.10 0.95 16 23 N -0.88 -27.83 13.67 55.49 0.76 -27.07 16 24 Si 1.09 25.41 29.92 -169.99 -5.09 20.32 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 C -0.15 -1.08 7.58 -25.92 -0.20 -1.28 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.20 7.92 -51.93 -0.41 -0.21 16 31 H 0.08 0.60 7.42 -51.93 -0.39 0.21 16 32 H 0.06 0.03 7.85 -51.93 -0.41 -0.38 16 33 H 0.08 0.03 7.79 -51.93 -0.40 -0.38 16 34 H 0.06 0.02 7.85 -51.93 -0.41 -0.38 16 35 H 0.12 0.25 7.87 -51.93 -0.41 -0.16 16 36 H 0.12 0.28 7.86 -51.93 -0.41 -0.13 16 37 H 0.40 1.20 8.73 -40.82 -0.36 0.84 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.40 4.31 8.70 -40.82 -0.36 3.95 16 41 H 0.09 1.82 8.14 -51.92 -0.42 1.40 16 42 H 0.09 1.77 8.14 -51.91 -0.42 1.35 16 43 H 0.28 8.92 7.12 -40.82 -0.29 8.63 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.48 8.12 -51.93 -0.42 0.06 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -42.89 393.55 -8.63 -51.53 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -6.77 Total: 1.05 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 0.26 Total: -0.18 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.43 Total: -46.39 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.44 Total: -27.00 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.11 Total: -5.26 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -42.89 -8.63 -51.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578448206.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.674 kcal (2) G-P(sol) polarization free energy of solvation -42.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds