Wall clock time and date at job start Wed Apr 1 2020 01:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00032 * 2 1 4 4 C 1.53006 * 109.47182 * 269.99828 * 3 2 1 5 5 N 1.46499 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99800 * 180.02562 * 6 5 4 9 9 S 1.80992 * 109.46859 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99945 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99963 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00146 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99783 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99773 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47173 * 90.00610 * 14 12 10 16 16 H 1.48510 * 109.46999 * 210.00145 * 14 12 10 17 17 H 1.48502 * 109.47274 * 330.00070 * 14 12 10 18 18 C 1.34776 * 119.99798 * 180.02562 * 2 1 3 19 19 O 1.21289 * 119.99744 * 174.77497 * 18 2 1 20 20 C 1.50698 * 120.00100 * 355.04884 * 18 2 1 21 21 H 1.08990 * 109.40325 * 334.88531 * 20 18 2 22 22 C 1.53070 * 109.39902 * 94.71248 * 20 18 2 23 23 C 1.53346 * 108.42809 * 169.02890 * 22 20 18 24 24 C 1.52929 * 108.67250 * 292.46955 * 23 22 20 25 25 N 1.45748 * 110.48678 * 50.74822 * 24 23 22 26 26 C 1.33352 * 124.11204 * 340.92863 * 25 24 23 27 27 O 1.21281 * 118.25071 * 182.22266 * 26 25 24 28 28 H 1.08996 * 109.47350 * 274.80991 * 1 2 3 29 29 H 1.09002 * 109.46949 * 34.81208 * 1 2 3 30 30 H 1.09002 * 109.46906 * 154.81310 * 1 2 3 31 31 H 1.09004 * 109.47094 * 29.99777 * 3 2 1 32 32 H 1.08997 * 109.47071 * 149.99922 * 3 2 1 33 33 H 1.08998 * 109.47046 * 300.00420 * 4 3 2 34 34 H 1.09005 * 109.46758 * 60.00109 * 4 3 2 35 35 H 0.97004 * 119.99571 * 359.97438 * 5 4 3 36 36 H 1.08997 * 109.46702 * 299.99559 * 8 6 5 37 37 H 1.08997 * 109.47180 * 59.99600 * 8 6 5 38 38 H 0.97000 * 119.99712 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.67675 * 288.76552 * 22 20 18 40 40 H 1.09004 * 109.67835 * 49.25697 * 22 20 18 41 41 H 1.09005 * 109.60282 * 52.22194 * 23 22 20 42 42 H 1.08998 * 109.60650 * 172.71425 * 23 22 20 43 43 H 1.08999 * 109.30026 * 171.06345 * 24 23 22 44 44 H 1.09002 * 109.29787 * 290.64363 * 24 23 22 45 45 H 0.97002 * 117.94187 * 160.92359 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 7 3.1845 2.9794 -1.4426 6 6 3.5210 3.5633 -2.6097 7 8 3.2181 3.0379 -3.6600 8 6 4.2744 4.8684 -2.6097 9 16 4.5760 5.3909 -4.3162 10 6 5.4443 6.8965 -4.0262 11 1 5.6331 7.2249 -3.0148 12 6 5.8857 7.6605 -5.0977 13 7 5.6552 7.2606 -6.3304 14 14 6.8068 9.2562 -4.7903 15 1 8.2634 8.9791 -4.7086 16 1 6.5446 10.2018 -5.9050 17 1 6.3446 9.8564 -3.5130 18 6 2.1389 -1.1672 -0.0005 19 8 3.3480 -1.1693 -0.0962 20 6 1.3896 -2.4699 0.1115 21 1 0.4375 -2.2980 0.6135 22 6 1.1317 -3.0303 -1.2894 23 6 0.6221 -4.4698 -1.1495 24 6 1.7560 -5.3398 -0.6052 25 7 2.3388 -4.7326 0.5847 26 6 2.2038 -3.4466 0.9106 27 8 2.7687 -3.0442 1.9055 28 1 -0.3634 0.0862 1.0240 29 1 -0.3633 0.8438 -0.5867 30 1 -0.3633 -0.9300 -0.4374 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9507 -1.9564 34 1 1.5001 1.8407 -1.9564 35 1 3.4264 3.3998 -0.6024 36 1 3.6855 5.6279 -2.0955 37 1 5.2270 4.7380 -2.0963 38 1 5.9640 7.7943 -7.0792 39 1 0.3812 -2.4228 -1.7953 40 1 2.0580 -3.0226 -1.8640 41 1 -0.2209 -4.4938 -0.4589 42 1 0.3101 -4.8437 -2.1246 43 1 1.3644 -6.3250 -0.3521 44 1 2.5279 -5.4440 -1.3677 45 1 2.8573 -5.2996 1.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580649401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:14 Heat of formation + Delta-G solvation = -107.220102 kcal Electronic energy + Delta-G solvation = -27043.545276 eV Core-core repulsion = 22994.282897 eV Total energy + Delta-G solvation = -4049.262379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41722 -39.62889 -38.96754 -36.97185 -36.27212 -34.56451 -33.58819 -32.40995 -30.94202 -30.07702 -28.39552 -26.97856 -25.57127 -25.35585 -23.64149 -22.89860 -20.71308 -20.15832 -19.19057 -18.07270 -17.82911 -17.53711 -16.97879 -16.59657 -16.25027 -15.73020 -15.48115 -15.32043 -15.00571 -14.78544 -14.61946 -14.51671 -14.21423 -13.94049 -13.84674 -13.68746 -13.38154 -13.13226 -12.93415 -12.54014 -12.46765 -12.30234 -12.10144 -12.02164 -11.89357 -11.65678 -11.36879 -11.04559 -11.00519 -10.75061 -10.23574 -10.13703 -9.80332 -9.54714 -9.44293 -9.09528 -9.05262 -8.88524 -8.21634 -6.47970 -6.19865 -3.90218 2.04313 2.15982 2.49588 2.88011 3.11806 3.13092 3.24085 3.30153 3.36192 3.76677 3.84344 3.98313 4.08061 4.13080 4.22287 4.34818 4.56980 4.60415 4.68557 4.75363 4.77294 4.93515 4.99920 5.07989 5.15244 5.15361 5.20409 5.21184 5.23795 5.29645 5.53705 5.63986 5.68762 5.82234 5.92257 6.08829 6.16776 6.29747 6.60692 6.78882 6.90461 7.61532 7.69387 7.72087 7.82721 8.37207 8.62718 9.25452 10.87593 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.001727 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.226172 B =16213.258430 C =16373.565714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.612 5.612 3 C 0.107 3.893 4 C 0.108 3.892 5 N -0.737 5.737 6 C 0.533 3.467 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.535 3.465 19 O -0.513 6.513 20 C -0.125 4.125 21 H 0.125 0.875 22 C -0.117 4.117 23 C -0.135 4.135 24 C 0.106 3.894 25 N -0.719 5.719 26 C 0.538 3.462 27 O -0.536 6.536 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.275 -24.979 15.571 33.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.347 5.347 3 C -0.016 4.016 4 C -0.017 4.017 5 N -0.392 5.392 6 C 0.319 3.681 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.320 3.680 19 O -0.386 6.386 20 C -0.150 4.150 21 H 0.142 0.858 22 C -0.155 4.155 23 C -0.172 4.172 24 C -0.018 4.018 25 N -0.372 5.372 26 C 0.323 3.677 27 O -0.412 6.412 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.112 0.888 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -15.949 -25.470 13.932 33.124 hybrid contribution 1.052 1.560 1.948 2.708 sum -14.897 -23.911 15.880 32.339 Atomic orbital electron populations 1.21956 0.78975 1.03773 1.02456 1.47601 1.07157 1.05476 1.74439 1.21610 0.98615 0.84674 0.96703 1.21555 0.97177 0.86439 0.96567 1.45838 1.60275 1.24037 1.09067 1.20303 0.78681 0.85994 0.83083 1.90698 1.53062 1.64360 1.31005 1.23528 1.02124 0.96215 1.08493 1.85391 1.73547 1.27179 0.97293 1.22875 1.42014 1.07926 0.95513 0.90898 1.24998 0.95814 0.98386 0.94435 1.70021 1.43943 1.38298 0.98050 0.86160 0.79717 0.81534 0.78034 1.20274 1.20765 1.19700 1.19817 0.87655 0.84279 0.76209 1.90785 1.13822 1.86721 1.47296 1.21431 1.00874 0.93417 0.99228 0.85769 1.21685 1.03644 0.96502 0.93635 1.21891 0.97866 0.94455 1.03027 1.21462 0.96203 0.96734 0.87417 1.45340 1.55060 1.09824 1.26933 1.19264 0.80774 0.82553 0.85072 1.90804 1.46429 1.76508 1.27501 0.91990 0.90222 0.90637 0.89501 0.89026 0.91206 0.91586 0.76749 0.89149 0.89114 0.92204 0.89513 0.89803 0.90518 0.88818 0.90101 0.91194 0.76083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.33 9.88 59.85 0.59 0.92 16 2 N -0.61 -5.42 2.87 -181.57 -0.52 -5.94 16 3 C 0.11 1.02 5.50 -4.04 -0.02 1.00 16 4 C 0.11 1.36 6.00 -4.04 -0.02 1.33 16 5 N -0.74 -10.24 5.56 -60.29 -0.33 -10.58 16 6 C 0.53 10.28 7.85 -10.98 -0.09 10.19 16 7 O -0.52 -12.11 15.86 5.56 0.09 -12.02 16 8 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.54 -15.42 9.50 30.94 0.29 -15.13 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.41 13.22 55.49 0.73 -25.67 16 14 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 18 C 0.53 6.07 6.26 -10.99 -0.07 6.00 16 19 O -0.51 -8.29 15.82 -5.81 -0.09 -8.38 16 20 C -0.13 -0.97 1.92 -93.14 -0.18 -1.15 16 21 H 0.12 0.61 6.49 -51.93 -0.34 0.27 16 22 C -0.12 -0.60 5.22 -26.52 -0.14 -0.73 16 23 C -0.13 -0.34 6.02 -26.59 -0.16 -0.50 16 24 C 0.11 0.34 7.17 -4.48 -0.03 0.31 16 25 N -0.72 -4.79 5.45 -61.39 -0.33 -5.12 16 26 C 0.54 5.51 6.90 -11.87 -0.08 5.43 16 27 O -0.54 -8.02 16.93 -5.81 -0.10 -8.12 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 0.32 8.11 -51.93 -0.42 -0.10 16 30 H 0.07 0.20 5.58 -51.93 -0.29 -0.09 16 31 H 0.09 0.60 8.07 -51.93 -0.42 0.18 16 32 H 0.09 1.02 7.50 -51.93 -0.39 0.63 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.40 4.24 8.47 -40.82 -0.35 3.89 16 36 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 37 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 38 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 0.30 7.38 -51.93 -0.38 -0.08 16 40 H 0.08 0.59 8.09 -51.93 -0.42 0.17 16 41 H 0.08 0.13 8.12 -51.93 -0.42 -0.29 16 42 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.40 2.36 8.80 -40.82 -0.36 2.01 16 LS Contribution 388.92 15.07 5.86 5.86 Total: -1.00 -42.03 388.92 -8.43 -50.46 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.71 Total: 0.04 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 0.22 Total: 6.75 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: -0.46 Total: -47.31 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.10 Total: -28.52 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -42.03 -8.43 -50.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580649401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.764 kcal (2) G-P(sol) polarization free energy of solvation -42.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds