Wall clock time and date at job start Wed Apr 1 2020 01:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 120.00032 * 2 1 4 4 C 1.53006 * 109.47182 * 269.99828 * 3 2 1 5 5 N 1.46499 * 109.47182 * 179.97438 * 4 3 2 6 6 C 1.34774 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.21276 * 120.00143 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99800 * 180.02562 * 6 5 4 9 9 S 1.80992 * 109.46859 * 179.97438 * 8 6 5 10 10 C 1.76203 * 99.99945 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99963 * 359.97438 * 10 9 8 12 12 C 1.38806 * 120.00146 * 179.97438 * 10 9 8 13 13 N 1.31628 * 119.99783 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99773 * 180.02562 * 12 10 9 15 15 H 1.48495 * 109.47173 * 90.00610 * 14 12 10 16 16 H 1.48510 * 109.46999 * 210.00145 * 14 12 10 17 17 H 1.48502 * 109.47274 * 330.00070 * 14 12 10 18 18 C 1.34776 * 119.99798 * 180.02562 * 2 1 3 19 19 O 1.21289 * 119.99744 * 174.77497 * 18 2 1 20 20 C 1.50698 * 120.00100 * 355.04884 * 18 2 1 21 21 H 1.08990 * 109.40325 * 334.88531 * 20 18 2 22 22 C 1.53070 * 109.39902 * 94.71248 * 20 18 2 23 23 C 1.53346 * 108.42809 * 169.02890 * 22 20 18 24 24 C 1.52929 * 108.67250 * 292.46955 * 23 22 20 25 25 N 1.45748 * 110.48678 * 50.74822 * 24 23 22 26 26 C 1.33352 * 124.11204 * 340.92863 * 25 24 23 27 27 O 1.21281 * 118.25071 * 182.22266 * 26 25 24 28 28 H 1.08996 * 109.47350 * 274.80991 * 1 2 3 29 29 H 1.09002 * 109.46949 * 34.81208 * 1 2 3 30 30 H 1.09002 * 109.46906 * 154.81310 * 1 2 3 31 31 H 1.09004 * 109.47094 * 29.99777 * 3 2 1 32 32 H 1.08997 * 109.47071 * 149.99922 * 3 2 1 33 33 H 1.08998 * 109.47046 * 300.00420 * 4 3 2 34 34 H 1.09005 * 109.46758 * 60.00109 * 4 3 2 35 35 H 0.97004 * 119.99571 * 359.97438 * 5 4 3 36 36 H 1.08997 * 109.46702 * 299.99559 * 8 6 5 37 37 H 1.08997 * 109.47180 * 59.99600 * 8 6 5 38 38 H 0.97000 * 119.99712 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.67675 * 288.76552 * 22 20 18 40 40 H 1.09004 * 109.67835 * 49.25697 * 22 20 18 41 41 H 1.09005 * 109.60282 * 52.22194 * 23 22 20 42 42 H 1.08998 * 109.60650 * 172.71425 * 23 22 20 43 43 H 1.08999 * 109.30026 * 171.06345 * 24 23 22 44 44 H 1.09002 * 109.29787 * 290.64363 * 24 23 22 45 45 H 0.97002 * 117.94187 * 160.92359 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 7 3.1845 2.9794 -1.4426 6 6 3.5210 3.5633 -2.6097 7 8 3.2181 3.0379 -3.6600 8 6 4.2744 4.8684 -2.6097 9 16 4.5760 5.3909 -4.3162 10 6 5.4443 6.8965 -4.0262 11 1 5.6331 7.2249 -3.0148 12 6 5.8857 7.6605 -5.0977 13 7 5.6552 7.2606 -6.3304 14 14 6.8068 9.2562 -4.7903 15 1 8.2634 8.9791 -4.7086 16 1 6.5446 10.2018 -5.9050 17 1 6.3446 9.8564 -3.5130 18 6 2.1389 -1.1672 -0.0005 19 8 3.3480 -1.1693 -0.0962 20 6 1.3896 -2.4699 0.1115 21 1 0.4375 -2.2980 0.6135 22 6 1.1317 -3.0303 -1.2894 23 6 0.6221 -4.4698 -1.1495 24 6 1.7560 -5.3398 -0.6052 25 7 2.3388 -4.7326 0.5847 26 6 2.2038 -3.4466 0.9106 27 8 2.7687 -3.0442 1.9055 28 1 -0.3634 0.0862 1.0240 29 1 -0.3633 0.8438 -0.5867 30 1 -0.3633 -0.9300 -0.4374 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0416 0.9507 -1.9564 34 1 1.5001 1.8407 -1.9564 35 1 3.4264 3.3998 -0.6024 36 1 3.6855 5.6279 -2.0955 37 1 5.2270 4.7380 -2.0963 38 1 5.9640 7.7943 -7.0792 39 1 0.3812 -2.4228 -1.7953 40 1 2.0580 -3.0226 -1.8640 41 1 -0.2209 -4.4938 -0.4589 42 1 0.3101 -4.8437 -2.1246 43 1 1.3644 -6.3250 -0.3521 44 1 2.5279 -5.4440 -1.3677 45 1 2.8573 -5.2996 1.1768 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580649401.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:13 Heat of formation + Delta-G solvation = -141.492595 kcal Electronic energy + Delta-G solvation = -27045.031443 eV Core-core repulsion = 22994.282897 eV Total energy + Delta-G solvation = -4050.748546 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11984 -40.73970 -40.13695 -37.58087 -37.22575 -35.70961 -34.58956 -34.23258 -31.97201 -30.94759 -29.49630 -27.71748 -27.52742 -26.00309 -24.44453 -23.53963 -21.96566 -21.00537 -19.89776 -19.75045 -18.72580 -18.20321 -17.95331 -17.59770 -17.51366 -16.88405 -16.76897 -16.67902 -16.01741 -15.98140 -15.66172 -15.26289 -15.22205 -14.88826 -14.70992 -14.65062 -14.43950 -14.32877 -13.95173 -13.61485 -13.32693 -13.17439 -13.16176 -13.00331 -12.89733 -12.61305 -12.56105 -12.40418 -12.27933 -11.98485 -11.74217 -11.14842 -11.12607 -10.96880 -10.88512 -10.29186 -10.21180 -10.10865 -9.85894 -8.67798 -8.35147 -6.13478 1.21709 1.30719 1.38123 1.42421 1.47331 1.56166 1.57057 1.82437 2.26539 2.30187 2.45414 2.98952 3.22853 3.31587 3.48570 3.64319 3.77604 3.81026 3.89831 3.98632 4.05749 4.15745 4.26087 4.28889 4.34402 4.49713 4.50989 4.66605 4.66934 4.69754 4.76022 4.86501 4.89016 5.01360 5.05862 5.24809 5.27122 5.41622 5.43675 5.76249 6.15817 6.19558 6.24678 6.43676 6.95759 7.06033 7.12456 7.18758 8.74166 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026378 B = 0.001727 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.226172 B =16213.258430 C =16373.565714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.609 5.609 3 C 0.114 3.886 4 C 0.115 3.885 5 N -0.711 5.711 6 C 0.535 3.465 7 O -0.566 6.566 8 C -0.129 4.129 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.012 3.988 13 N -0.911 5.911 14 Si 1.000 3.000 15 H -0.269 1.269 16 H -0.277 1.277 17 H -0.257 1.257 18 C 0.523 3.477 19 O -0.576 6.576 20 C -0.119 4.119 21 H 0.158 0.842 22 C -0.115 4.115 23 C -0.128 4.128 24 C 0.096 3.904 25 N -0.710 5.710 26 C 0.527 3.473 27 O -0.597 6.597 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.072 0.928 33 H 0.035 0.965 34 H 0.073 0.927 35 H 0.419 0.581 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.109 0.891 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.068 0.932 45 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.443 -25.011 17.192 35.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.341 5.341 3 C -0.010 4.010 4 C -0.011 4.011 5 N -0.366 5.366 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.280 4.280 9 S 0.075 5.925 10 C -0.694 4.694 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.181 1.181 18 C 0.311 3.689 19 O -0.454 6.454 20 C -0.143 4.143 21 H 0.175 0.825 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.026 4.026 25 N -0.361 5.361 26 C 0.313 3.687 27 O -0.479 6.479 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.256 0.744 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.130 0.870 44 H 0.087 0.913 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.187 -25.544 15.587 35.018 hybrid contribution 1.667 1.437 1.493 2.659 sum -16.521 -24.108 17.080 33.850 Atomic orbital electron populations 1.22327 0.75913 1.05617 1.04217 1.47767 1.09006 1.04434 1.72931 1.21543 0.98956 0.86109 0.94403 1.21585 0.96381 0.84525 0.98568 1.45554 1.58733 1.23935 1.08336 1.20100 0.78491 0.85613 0.83752 1.90686 1.55217 1.65455 1.33025 1.23368 1.03718 0.97534 1.03407 1.85575 1.74142 1.28296 1.04465 1.23212 1.42069 1.07948 0.96205 0.89840 1.26149 0.96614 1.02490 0.93988 1.70185 1.45251 1.40088 0.99230 0.84934 0.78125 0.76278 0.78513 1.19479 1.20176 1.18102 1.20555 0.87258 0.86019 0.75064 1.90747 1.16619 1.87737 1.50323 1.21491 1.01030 0.90931 1.00805 0.82459 1.21746 1.03144 0.98799 0.91604 1.21942 0.97732 0.92120 1.04732 1.21807 0.96638 0.98149 0.86039 1.45454 1.54092 1.08933 1.27597 1.19798 0.80537 0.83737 0.84588 1.90765 1.49152 1.77777 1.30168 0.90087 0.89107 0.88358 0.85685 0.90942 0.94610 0.90828 0.74417 0.86608 0.87397 0.91977 0.87298 0.92549 0.88664 0.86506 0.87023 0.91347 0.75947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.35 9.88 127.77 1.26 1.61 16 2 N -0.61 -9.94 2.87 -846.74 -2.43 -12.37 16 3 C 0.11 2.02 5.50 86.38 0.48 2.50 16 4 C 0.11 2.82 6.00 86.38 0.52 3.34 16 5 N -0.71 -18.93 5.56 -463.05 -2.57 -21.50 16 6 C 0.53 20.49 7.85 87.66 0.69 21.17 16 7 O -0.57 -27.17 15.86 -3.02 -0.05 -27.21 16 8 C -0.13 -5.22 6.16 71.24 0.44 -4.79 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.75 16 10 C -0.55 -31.59 9.50 67.96 0.65 -30.95 16 11 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 12 C 0.01 0.71 5.49 84.86 0.47 1.17 16 13 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 14 Si 1.00 44.06 29.55 68.60 2.03 46.09 16 15 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 18 C 0.52 11.97 6.26 87.66 0.55 12.52 16 19 O -0.58 -19.88 15.82 7.81 0.12 -19.75 16 20 C -0.12 -1.71 1.92 -12.43 -0.02 -1.73 16 21 H 0.16 1.09 6.49 -2.39 -0.02 1.08 16 22 C -0.11 -0.97 5.22 30.73 0.16 -0.81 16 23 C -0.13 -0.24 6.02 30.69 0.18 -0.05 16 24 C 0.10 0.43 7.17 86.50 0.62 1.05 16 25 N -0.71 -9.11 5.45 -467.31 -2.55 -11.65 16 26 C 0.53 10.90 6.90 87.72 0.61 11.51 16 27 O -0.60 -18.82 16.93 7.83 0.13 -18.69 16 28 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 29 H 0.09 0.39 8.11 -2.39 -0.02 0.37 16 30 H 0.10 0.13 5.58 -2.39 -0.01 0.11 16 31 H 0.13 1.30 8.07 -2.39 -0.02 1.28 16 32 H 0.07 1.62 7.50 -2.39 -0.02 1.60 16 33 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.42 7.95 8.47 -92.71 -0.79 7.16 16 36 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 37 H 0.11 4.00 8.14 -2.40 -0.02 3.98 16 38 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.11 0.43 7.38 -2.39 -0.02 0.41 16 40 H 0.06 0.81 8.09 -2.38 -0.02 0.79 16 41 H 0.09 -0.10 8.12 -2.38 -0.02 -0.12 16 42 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.40 4.77 8.80 -92.71 -0.82 3.96 16 Total: -1.00 -99.17 388.92 -0.17 -99.34 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -0.57 Total: 15.19 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.59 Total: 16.54 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -7.26 Total: -101.76 kcal Atomic # 8 Polarization: -65.87 SS G_CDS: 0.21 Total: -65.66 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.75 kcal Total: -99.17 -0.17 -99.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580649401.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.150 kcal (2) G-P(sol) polarization free energy of solvation -99.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds