Wall clock time and date at job start Wed Apr 1 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 119.99925 * 2 1 4 4 C 1.53006 * 109.46532 * 90.00162 * 3 2 1 5 5 H 1.08993 * 110.91685 * 302.54776 * 4 3 2 6 6 C 1.55162 * 111.00010 * 178.65019 * 4 3 2 7 7 C 1.54317 * 102.86152 * 206.22922 * 6 4 3 8 8 N 1.47021 * 107.27565 * 22.52884 * 7 6 4 9 9 C 1.34778 * 125.64597 * 180.97116 * 8 7 6 10 10 O 1.21278 * 119.99748 * 179.68858 * 9 8 7 11 11 C 1.50697 * 120.00209 * 359.68671 * 9 8 7 12 12 S 1.80999 * 109.47181 * 180.02562 * 11 9 8 13 13 C 1.76199 * 99.99825 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99855 * 179.72221 * 13 12 11 16 16 N 1.31634 * 119.99756 * 0.27728 * 15 13 12 17 17 Si 1.86803 * 120.00005 * 180.27923 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00123 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99873 * 17 15 13 21 21 C 1.47426 * 108.70439 * 0.70052 * 8 7 6 22 22 C 1.34773 * 119.99981 * 180.02562 * 2 1 3 23 23 O 1.21290 * 119.99648 * 180.02562 * 22 2 1 24 24 C 1.50699 * 120.00294 * 359.97438 * 22 2 1 25 25 C 1.50692 * 109.47258 * 180.02562 * 24 22 2 26 26 N 1.34772 * 120.00004 * 179.97438 * 25 24 22 27 27 O 1.21282 * 120.00128 * 0.02562 * 25 24 22 28 28 H 1.08999 * 109.47232 * 89.99269 * 1 2 3 29 29 H 1.09000 * 109.46819 * 209.99895 * 1 2 3 30 30 H 1.08998 * 109.47197 * 329.99615 * 1 2 3 31 31 H 1.08991 * 109.47264 * 330.00596 * 3 2 1 32 32 H 1.08996 * 109.46885 * 209.99974 * 3 2 1 33 33 H 1.08997 * 110.71728 * 324.78721 * 6 4 3 34 34 H 1.09000 * 110.72179 * 88.06181 * 6 4 3 35 35 H 1.08996 * 109.98636 * 263.04685 * 7 6 4 36 36 H 1.09000 * 109.76998 * 141.88598 * 7 6 4 37 37 H 1.08999 * 109.47278 * 59.99800 * 11 9 8 38 38 H 1.09002 * 109.46837 * 300.00183 * 11 9 8 39 39 H 0.97000 * 119.99219 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.36576 * 94.93815 * 21 8 7 41 41 H 1.08997 * 110.36974 * 217.15308 * 21 8 7 42 42 H 1.09003 * 109.46922 * 300.00250 * 24 22 2 43 43 H 1.09000 * 109.46787 * 60.00183 * 24 22 2 44 44 H 0.97002 * 120.00053 * 0.02562 * 26 25 24 45 45 H 0.97007 * 119.99955 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5159 1.8045 1.9920 6 6 3.2573 3.0362 1.4843 7 6 3.9760 2.9591 2.8477 8 7 4.0445 1.5399 3.2255 9 6 4.5830 1.0547 4.3618 10 8 4.5795 -0.1396 4.5726 11 6 5.1894 1.9961 5.3702 12 16 5.8237 1.0479 6.7755 13 6 6.4572 2.3588 7.7679 14 1 6.3776 3.3807 7.4278 15 6 7.0531 2.0785 8.9898 16 7 7.1497 0.8329 9.4046 17 14 7.7178 3.4688 10.0456 18 1 6.6503 3.9514 10.9581 19 1 8.8678 2.9764 10.8458 20 1 8.1639 4.5839 9.1721 21 6 3.4208 0.7360 2.1586 22 6 2.1388 -1.1672 -0.0005 23 8 3.3517 -1.1671 -0.0001 24 6 1.3854 -2.4723 -0.0005 25 6 2.3647 -3.6177 -0.0005 26 7 1.9155 -4.8883 0.0000 27 8 3.5571 -3.3960 -0.0001 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1499 1.1385 -0.5138 33 1 3.9770 3.0763 0.6666 34 1 2.5873 3.8954 1.4522 35 1 3.4134 3.5155 3.5974 36 1 4.9825 3.3678 2.7577 37 1 4.4292 2.6959 5.7170 38 1 6.0068 2.5481 4.9062 39 1 7.5665 0.6371 10.2583 40 1 4.1787 0.3752 1.4633 41 1 2.8706 -0.1016 2.5871 42 1 0.7591 -2.5302 0.8897 43 1 0.7585 -2.5298 -0.8903 44 1 0.9618 -5.0656 0.0000 45 1 2.5459 -5.6256 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001581775708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:34 Heat of formation + Delta-G solvation = -98.240819 kcal Electronic energy + Delta-G solvation = -27756.074731 eV Core-core repulsion = 23707.201723 eV Total energy + Delta-G solvation = -4048.873008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74349 -39.67567 -38.79012 -37.18442 -35.68405 -33.87988 -32.59628 -32.37222 -30.74809 -29.49735 -28.96312 -27.13011 -25.76452 -25.31754 -23.06993 -21.61715 -20.55364 -19.43262 -19.19940 -17.87227 -17.64455 -17.58996 -16.59114 -16.51358 -16.21088 -16.07859 -15.68474 -14.99321 -14.80477 -14.75399 -14.31362 -13.83676 -13.79860 -13.64776 -13.50746 -13.34995 -13.18478 -12.96422 -12.69405 -12.53312 -12.36326 -12.25475 -11.96488 -11.67117 -11.54352 -11.07072 -11.01743 -10.96180 -10.86811 -10.71028 -10.33824 -9.89038 -9.75748 -9.62447 -9.27636 -9.01403 -8.94662 -8.31344 -8.15365 -6.43356 -6.15998 -3.86020 2.33998 2.49369 2.54772 3.04540 3.21742 3.25894 3.30450 3.31564 3.34791 3.72276 4.04696 4.25514 4.34335 4.45218 4.54964 4.59244 4.60881 4.74869 4.84095 4.93439 5.01451 5.13040 5.18479 5.20050 5.23379 5.24530 5.40172 5.53839 5.59646 5.64060 5.72744 5.87030 5.98491 6.04406 6.13783 6.22277 6.27632 6.53565 6.59478 6.96407 7.08124 7.64730 7.84372 7.95039 8.12909 8.40754 8.71827 9.28861 10.91492 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002388 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.091794 B =11720.560948 C =13097.984298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.624 5.624 3 C 0.130 3.870 4 C -0.121 4.121 5 H 0.084 0.916 6 C -0.122 4.122 7 C 0.103 3.897 8 N -0.628 5.628 9 C 0.546 3.454 10 O -0.515 6.515 11 C -0.145 4.145 12 S -0.062 6.062 13 C -0.534 4.534 14 H 0.072 0.928 15 C 0.073 3.927 16 N -0.868 5.868 17 Si 0.919 3.081 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.119 3.881 22 C 0.509 3.491 23 O -0.480 6.480 24 C -0.165 4.165 25 C 0.512 3.488 26 N -0.861 5.861 27 O -0.491 6.491 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.268 0.732 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.398 0.602 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.016 -0.905 -25.057 32.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.360 5.360 3 C 0.007 3.993 4 C -0.141 4.141 5 H 0.102 0.898 6 C -0.161 4.161 7 C -0.021 4.021 8 N -0.366 5.366 9 C 0.334 3.666 10 O -0.389 6.389 11 C -0.296 4.296 12 S 0.165 5.835 13 C -0.682 4.682 14 H 0.090 0.910 15 C -0.137 4.137 16 N -0.503 5.503 17 Si 0.745 3.255 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.004 4.004 22 C 0.295 3.705 23 O -0.350 6.350 24 C -0.208 4.208 25 C 0.294 3.706 26 N -0.427 5.427 27 O -0.362 6.362 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.226 0.774 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -19.451 -2.497 -24.521 31.398 hybrid contribution -0.174 1.926 0.545 2.009 sum -19.625 -0.571 -23.976 30.989 Atomic orbital electron populations 1.21817 0.79570 1.03522 1.01753 1.47850 1.06850 1.05880 1.75401 1.21407 0.98191 0.84248 0.95464 1.22835 0.99002 0.95672 0.96592 0.89758 1.22626 0.99124 0.97109 0.97203 1.21953 1.00868 0.83226 0.96039 1.48534 1.60722 1.07473 1.19825 1.20003 0.77219 0.89094 0.80275 1.90713 1.56230 1.16106 1.75855 1.23496 1.02996 1.02276 1.00785 1.85425 1.74522 1.10798 1.12751 1.22866 1.44674 0.94132 1.06516 0.90977 1.25000 0.95417 0.96391 0.96851 1.70032 1.41690 1.17815 1.20771 0.86165 0.78480 0.81068 0.79757 1.20310 1.20761 1.19703 1.22239 0.95456 0.93578 0.89083 1.19978 0.88268 0.84607 0.77680 1.90900 1.12843 1.86073 1.45206 1.21621 0.99727 0.93105 1.06376 1.19986 0.89607 0.84033 0.76996 1.43845 1.11716 1.07648 1.79505 1.90956 1.16056 1.83760 1.45395 0.92479 0.91064 0.90781 0.89918 0.89285 0.90190 0.89915 0.91401 0.91298 0.89459 0.89377 0.92232 0.90148 0.91533 0.86047 0.86235 0.77435 0.76531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.25 10.24 59.85 0.61 0.86 16 2 N -0.62 -4.66 2.83 -181.57 -0.51 -5.17 16 3 C 0.13 0.99 5.02 -4.03 -0.02 0.97 16 4 C -0.12 -1.14 3.29 -88.47 -0.29 -1.43 16 5 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 6 C -0.12 -1.02 6.42 -24.90 -0.16 -1.18 16 7 C 0.10 1.23 6.48 -3.07 -0.02 1.21 16 8 N -0.63 -10.59 3.33 -170.53 -0.57 -11.16 16 9 C 0.55 11.92 7.87 -10.99 -0.09 11.83 16 10 O -0.52 -13.47 16.12 5.56 0.09 -13.38 16 11 C -0.14 -3.23 5.35 36.00 0.19 -3.04 16 12 S -0.06 -1.78 20.57 -107.50 -2.21 -3.99 16 13 C -0.53 -15.78 9.50 30.94 0.29 -15.48 16 14 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 15 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 16 N -0.87 -26.97 13.22 55.49 0.73 -26.24 16 17 Si 0.92 21.99 29.55 -169.99 -5.02 16.97 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 21 C 0.12 1.80 5.00 -2.53 -0.01 1.79 16 22 C 0.51 5.45 7.09 -10.99 -0.08 5.37 16 23 O -0.48 -7.78 11.61 -18.97 -0.22 -8.00 16 24 C -0.17 -1.09 4.74 -29.04 -0.14 -1.23 16 25 C 0.51 5.29 8.09 -10.99 -0.09 5.20 16 26 N -0.86 -4.93 8.87 31.22 0.28 -4.65 16 27 O -0.49 -8.31 15.02 -18.96 -0.28 -8.60 16 28 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 29 H 0.07 0.13 6.44 -51.93 -0.33 -0.20 16 30 H 0.07 0.19 8.07 -51.93 -0.42 -0.23 16 31 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 32 H 0.09 0.85 7.38 -51.93 -0.38 0.47 16 33 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 38 H 0.09 1.84 8.14 -51.91 -0.42 1.42 16 39 H 0.27 7.71 8.31 -40.82 -0.34 7.38 16 40 H 0.08 1.40 6.57 -51.93 -0.34 1.06 16 41 H 0.07 1.15 8.03 -51.93 -0.42 0.74 16 42 H 0.12 0.50 7.40 -51.93 -0.38 0.11 16 43 H 0.12 0.33 8.11 -51.93 -0.42 -0.09 16 44 H 0.40 0.71 8.83 -40.82 -0.36 0.35 16 45 H 0.40 2.29 8.93 -40.82 -0.36 1.93 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -44.29 385.99 -8.56 -52.85 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.77 Total: -1.37 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: 0.11 Total: 6.91 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.07 Total: -47.22 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.42 Total: -29.97 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.78 SS G_CDS: -2.21 Total: -3.99 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -44.29 -8.56 -52.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.393 kcal (2) G-P(sol) polarization free energy of solvation -44.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds