Wall clock time and date at job start Wed Apr 1 2020 01:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 119.99925 * 2 1 4 4 C 1.53006 * 109.46532 * 90.00162 * 3 2 1 5 5 H 1.08993 * 110.91685 * 302.54776 * 4 3 2 6 6 C 1.55162 * 111.00010 * 178.65019 * 4 3 2 7 7 C 1.54317 * 102.86152 * 206.22922 * 6 4 3 8 8 N 1.47021 * 107.27565 * 22.52884 * 7 6 4 9 9 C 1.34778 * 125.64597 * 180.97116 * 8 7 6 10 10 O 1.21278 * 119.99748 * 179.68858 * 9 8 7 11 11 C 1.50697 * 120.00209 * 359.68671 * 9 8 7 12 12 S 1.80999 * 109.47181 * 180.02562 * 11 9 8 13 13 C 1.76199 * 99.99825 * 179.97438 * 12 11 9 14 14 H 1.08002 * 120.00405 * 0.02562 * 13 12 11 15 15 C 1.38803 * 119.99855 * 179.72221 * 13 12 11 16 16 N 1.31634 * 119.99756 * 0.27728 * 15 13 12 17 17 Si 1.86803 * 120.00005 * 180.27923 * 15 13 12 18 18 H 1.48498 * 109.47174 * 90.00123 * 17 15 13 19 19 H 1.48501 * 109.47062 * 210.00074 * 17 15 13 20 20 H 1.48504 * 109.46913 * 329.99873 * 17 15 13 21 21 C 1.47426 * 108.70439 * 0.70052 * 8 7 6 22 22 C 1.34773 * 119.99981 * 180.02562 * 2 1 3 23 23 O 1.21290 * 119.99648 * 180.02562 * 22 2 1 24 24 C 1.50699 * 120.00294 * 359.97438 * 22 2 1 25 25 C 1.50692 * 109.47258 * 180.02562 * 24 22 2 26 26 N 1.34772 * 120.00004 * 179.97438 * 25 24 22 27 27 O 1.21282 * 120.00128 * 0.02562 * 25 24 22 28 28 H 1.08999 * 109.47232 * 89.99269 * 1 2 3 29 29 H 1.09000 * 109.46819 * 209.99895 * 1 2 3 30 30 H 1.08998 * 109.47197 * 329.99615 * 1 2 3 31 31 H 1.08991 * 109.47264 * 330.00596 * 3 2 1 32 32 H 1.08996 * 109.46885 * 209.99974 * 3 2 1 33 33 H 1.08997 * 110.71728 * 324.78721 * 6 4 3 34 34 H 1.09000 * 110.72179 * 88.06181 * 6 4 3 35 35 H 1.08996 * 109.98636 * 263.04685 * 7 6 4 36 36 H 1.09000 * 109.76998 * 141.88598 * 7 6 4 37 37 H 1.08999 * 109.47278 * 59.99800 * 11 9 8 38 38 H 1.09002 * 109.46837 * 300.00183 * 11 9 8 39 39 H 0.97000 * 119.99219 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.36576 * 94.93815 * 21 8 7 41 41 H 1.08997 * 110.36974 * 217.15308 * 21 8 7 42 42 H 1.09003 * 109.46922 * 300.00250 * 24 22 2 43 43 H 1.09000 * 109.46787 * 60.00183 * 24 22 2 44 44 H 0.97002 * 120.00053 * 0.02562 * 26 25 24 45 45 H 0.97007 * 119.99955 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5159 1.8045 1.9920 6 6 3.2573 3.0362 1.4843 7 6 3.9760 2.9591 2.8477 8 7 4.0445 1.5399 3.2255 9 6 4.5830 1.0547 4.3618 10 8 4.5795 -0.1396 4.5726 11 6 5.1894 1.9961 5.3702 12 16 5.8237 1.0479 6.7755 13 6 6.4572 2.3588 7.7679 14 1 6.3776 3.3807 7.4278 15 6 7.0531 2.0785 8.9898 16 7 7.1497 0.8329 9.4046 17 14 7.7178 3.4688 10.0456 18 1 6.6503 3.9514 10.9581 19 1 8.8678 2.9764 10.8458 20 1 8.1639 4.5839 9.1721 21 6 3.4208 0.7360 2.1586 22 6 2.1388 -1.1672 -0.0005 23 8 3.3517 -1.1671 -0.0001 24 6 1.3854 -2.4723 -0.0005 25 6 2.3647 -3.6177 -0.0005 26 7 1.9155 -4.8883 0.0000 27 8 3.5571 -3.3960 -0.0001 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.6084 2.0284 -0.5137 32 1 3.1499 1.1385 -0.5138 33 1 3.9770 3.0763 0.6666 34 1 2.5873 3.8954 1.4522 35 1 3.4134 3.5155 3.5974 36 1 4.9825 3.3678 2.7577 37 1 4.4292 2.6959 5.7170 38 1 6.0068 2.5481 4.9062 39 1 7.5665 0.6371 10.2583 40 1 4.1787 0.3752 1.4633 41 1 2.8706 -0.1016 2.5871 42 1 0.7591 -2.5302 0.8897 43 1 0.7585 -2.5298 -0.8903 44 1 0.9618 -5.0656 0.0000 45 1 2.5459 -5.6256 -0.0004 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001581775708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:34 Heat of formation + Delta-G solvation = -134.583446 kcal Electronic energy + Delta-G solvation = -27757.650666 eV Core-core repulsion = 23707.201723 eV Total energy + Delta-G solvation = -4050.448942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55669 -40.93096 -39.73471 -38.48778 -36.47095 -34.64984 -34.61489 -33.68284 -31.58071 -30.88438 -29.97360 -27.84169 -27.56473 -26.53391 -24.16377 -22.37111 -21.38415 -20.76310 -20.07474 -19.61626 -18.57080 -18.20121 -18.13176 -17.52775 -16.98697 -16.91233 -16.81335 -16.57195 -16.53652 -15.89740 -15.55138 -15.46489 -14.76346 -14.58352 -14.46867 -14.34612 -14.16108 -13.94967 -13.87351 -13.51660 -13.40500 -13.19711 -13.08947 -12.95262 -12.89977 -12.63766 -12.62115 -12.30207 -12.00065 -11.76026 -11.63424 -11.16454 -11.14277 -11.04011 -10.59422 -10.48490 -10.32693 -9.74246 -9.55134 -8.73291 -8.36851 -6.17214 1.20282 1.41707 1.42415 1.49432 1.55058 1.65128 1.76997 1.95423 2.06957 2.24809 2.74371 2.96949 3.19713 3.41449 3.55773 3.59660 3.80135 3.89642 4.10514 4.15858 4.27740 4.29849 4.34545 4.36490 4.38673 4.43034 4.53161 4.56412 4.69315 4.73885 4.86075 4.91341 4.98358 5.07346 5.09266 5.27300 5.37688 5.38567 5.65721 5.93611 6.17301 6.36496 6.40992 6.55527 7.03252 7.05728 7.29713 7.48745 8.72884 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.015551 B = 0.002388 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.091794 B =11720.560948 C =13097.984298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.619 5.619 3 C 0.130 3.870 4 C -0.103 4.103 5 H 0.102 0.898 6 C -0.108 4.108 7 C 0.086 3.914 8 N -0.620 5.620 9 C 0.538 3.462 10 O -0.574 6.574 11 C -0.114 4.114 12 S -0.157 6.157 13 C -0.545 4.545 14 H 0.084 0.916 15 C 0.011 3.989 16 N -0.913 5.913 17 Si 1.004 2.996 18 H -0.265 1.265 19 H -0.277 1.277 20 H -0.257 1.257 21 C 0.120 3.880 22 C 0.493 3.507 23 O -0.550 6.550 24 C -0.155 4.155 25 C 0.501 3.499 26 N -0.838 5.838 27 O -0.571 6.571 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.129 0.871 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.272 0.728 40 H 0.050 0.950 41 H 0.034 0.966 42 H 0.152 0.848 43 H 0.168 0.832 44 H 0.420 0.580 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.344 2.472 -26.396 35.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.353 5.353 3 C 0.007 3.993 4 C -0.123 4.123 5 H 0.120 0.880 6 C -0.146 4.146 7 C -0.036 4.036 8 N -0.355 5.355 9 C 0.327 3.673 10 O -0.454 6.454 11 C -0.265 4.265 12 S 0.070 5.930 13 C -0.692 4.692 14 H 0.102 0.898 15 C -0.194 4.194 16 N -0.549 5.549 17 Si 0.825 3.175 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.181 1.181 21 C -0.003 4.003 22 C 0.280 3.720 23 O -0.426 6.426 24 C -0.197 4.197 25 C 0.285 3.715 26 N -0.404 5.404 27 O -0.448 6.448 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.170 0.830 43 H 0.185 0.815 44 H 0.252 0.748 45 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -22.921 0.907 -25.920 34.612 hybrid contribution 0.745 0.826 0.830 1.387 sum -22.175 1.732 -25.090 33.530 Atomic orbital electron populations 1.22177 0.76391 1.05111 1.03774 1.47992 1.08747 1.04882 1.73672 1.21468 0.98246 0.85516 0.94108 1.22821 0.98040 0.94309 0.97143 0.88014 1.22678 0.99391 0.97696 0.94829 1.22442 1.02263 0.79980 0.98884 1.48588 1.58441 1.10269 1.18219 1.19965 0.77536 0.88187 0.81648 1.90683 1.58883 1.18293 1.77517 1.23265 1.03791 1.01386 0.98070 1.85683 1.75716 1.14717 1.16890 1.23181 1.45016 0.94129 1.06921 0.89764 1.26223 0.95324 0.99520 0.98298 1.70208 1.42625 1.20613 1.21477 0.84878 0.77864 0.77175 0.77560 1.18960 1.20247 1.18097 1.22283 0.95646 0.94322 0.88010 1.20771 0.87877 0.86657 0.76689 1.90885 1.15952 1.87181 1.48537 1.21706 0.98750 0.89380 1.09901 1.20760 0.89249 0.85912 0.75628 1.43696 1.13144 1.06381 1.77210 1.90932 1.19452 1.85057 1.49377 0.90135 0.89476 0.89371 0.85339 0.91905 0.89500 0.85571 0.89623 0.90852 0.87087 0.87779 0.91929 0.93177 0.94721 0.83009 0.81490 0.74772 0.76517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 10.24 127.77 1.31 1.44 16 2 N -0.62 -7.95 2.83 -846.75 -2.39 -10.34 16 3 C 0.13 1.68 5.02 86.38 0.43 2.11 16 4 C -0.10 -1.71 3.29 -9.40 -0.03 -1.74 16 5 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 6 C -0.11 -1.39 6.42 31.78 0.20 -1.19 16 7 C 0.09 1.87 6.48 86.73 0.56 2.43 16 8 N -0.62 -21.17 3.33 -811.83 -2.70 -23.88 16 9 C 0.54 24.47 7.87 87.66 0.69 25.16 16 10 O -0.57 -32.27 16.12 -3.02 -0.05 -32.32 16 11 C -0.11 -5.16 5.35 71.23 0.38 -4.78 16 12 S -0.16 -9.45 20.57 -56.49 -1.16 -10.61 16 13 C -0.54 -32.55 9.50 67.96 0.65 -31.91 16 14 H 0.08 4.65 7.80 -2.91 -0.02 4.63 16 15 C 0.01 0.64 5.49 84.86 0.47 1.11 16 16 N -0.91 -58.21 13.22 21.65 0.29 -57.93 16 17 Si 1.00 44.89 29.55 68.60 2.03 46.92 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 C 0.12 3.78 5.00 86.85 0.43 4.22 16 22 C 0.49 10.62 7.09 87.66 0.62 11.24 16 23 O -0.55 -19.50 11.61 20.38 0.24 -19.26 16 24 C -0.16 -1.83 4.74 29.10 0.14 -1.69 16 25 C 0.50 10.71 8.09 87.66 0.71 11.42 16 26 N -0.84 -9.19 8.87 -173.54 -1.54 -10.73 16 27 O -0.57 -21.30 15.02 20.40 0.31 -20.99 16 28 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.09 -0.07 6.44 -2.39 -0.02 -0.09 16 30 H 0.09 0.00 8.07 -2.39 -0.02 -0.02 16 31 H 0.13 0.55 8.07 -2.39 -0.02 0.53 16 32 H 0.06 1.19 7.38 -2.39 -0.02 1.17 16 33 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 34 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.11 4.45 8.14 -2.39 -0.02 4.43 16 38 H 0.10 4.34 8.14 -2.39 -0.02 4.32 16 39 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 40 H 0.05 1.91 6.57 -2.39 -0.02 1.90 16 41 H 0.03 1.29 8.03 -2.39 -0.02 1.27 16 42 H 0.15 0.83 7.40 -2.39 -0.02 0.81 16 43 H 0.17 0.29 8.11 -2.39 -0.02 0.27 16 44 H 0.42 0.62 8.83 -92.71 -0.82 -0.19 16 45 H 0.40 4.70 8.93 -92.70 -0.83 3.88 16 Total: -1.00 -109.99 385.99 0.96 -109.03 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -0.62 Total: 12.26 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 6.56 Total: 17.84 kcal Atomic # 7 Polarization: -96.52 SS G_CDS: -6.35 Total: -102.87 kcal Atomic # 8 Polarization: -73.06 SS G_CDS: 0.49 Total: -72.57 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Atomic # 16 Polarization: -9.45 SS G_CDS: -1.16 Total: -10.61 kcal Total: -109.99 0.96 -109.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001581775708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.549 kcal (2) G-P(sol) polarization free energy of solvation -109.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -109.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds