Wall clock time and date at job start Wed Apr 1 2020 02:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00007 * 2 1 4 4 O 1.20833 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00258 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47356 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47371 * 179.97438 * 6 5 3 8 8 C 1.37099 * 120.00039 * 270.00328 * 7 6 5 9 9 H 1.07997 * 120.00285 * 145.29925 * 8 7 6 10 10 C 1.38959 * 119.99784 * 325.30162 * 8 7 6 11 11 N 1.31411 * 119.99755 * 337.27038 * 10 8 7 12 12 Si 1.86801 * 119.99800 * 157.27231 * 10 8 7 13 13 H 1.48502 * 109.47067 * 60.00054 * 12 10 8 14 14 H 1.48498 * 109.46683 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47043 * 299.99802 * 12 10 8 16 16 C 1.34774 * 119.99933 * 89.99448 * 7 6 5 17 17 O 1.21294 * 120.00291 * 4.89283 * 16 7 6 18 18 C 1.50700 * 119.99956 * 184.88752 * 16 7 6 19 19 C 1.52998 * 109.47344 * 177.72876 * 18 16 7 20 20 C 1.53001 * 109.47440 * 180.02562 * 19 18 16 21 21 H 1.08998 * 110.27503 * 307.09339 * 20 19 18 22 22 C 1.54944 * 110.31219 * 184.99694 * 20 19 18 23 23 C 1.55302 * 100.94301 * 204.64079 * 22 20 19 24 24 H 1.08999 * 110.84771 * 275.94233 * 23 22 20 25 25 C 1.50701 * 110.84649 * 152.32113 * 23 22 20 26 26 O 1.20824 * 120.00082 * 0.02562 * 25 23 22 27 27 O 1.34228 * 119.99801 * 179.97438 * 25 23 22 28 28 C 1.54384 * 102.25225 * 34.13411 * 23 22 20 29 29 O 1.43239 * 107.59009 * 338.64305 * 28 23 22 30 30 H 1.08996 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46926 * 300.00234 * 1 2 3 32 32 H 1.08995 * 109.46901 * 59.99604 * 1 2 3 33 33 H 1.08996 * 109.47272 * 59.99449 * 5 3 2 34 34 H 1.09011 * 109.47008 * 299.99821 * 5 3 2 35 35 H 1.09003 * 109.47467 * 59.99865 * 6 5 3 36 36 H 1.08997 * 109.47256 * 299.99369 * 6 5 3 37 37 H 0.97002 * 119.99390 * 185.00597 * 11 10 8 38 38 H 1.09001 * 109.47276 * 57.72578 * 18 16 7 39 39 H 1.09003 * 109.47320 * 297.72927 * 18 16 7 40 40 H 1.09007 * 109.46756 * 299.99831 * 19 18 16 41 41 H 1.09001 * 109.47177 * 59.99641 * 19 18 16 42 42 H 1.09002 * 111.12086 * 322.56261 * 22 20 19 43 43 H 1.08993 * 111.12481 * 86.71621 * 22 20 19 44 44 H 0.96701 * 116.99878 * 180.02562 * 27 25 23 45 45 H 1.08998 * 109.83042 * 98.15909 * 28 23 22 46 46 H 1.08999 * 109.82890 * 219.13111 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1477 2.8551 1.1863 9 1 7.1102 2.3724 1.2697 10 6 5.6029 3.5129 2.2824 11 7 4.7002 4.4510 2.1038 12 14 6.1539 3.0635 4.0098 13 1 7.6145 3.2979 4.1402 14 1 5.4282 3.9046 4.9953 15 1 5.8575 1.6314 4.2672 16 6 6.1362 2.8536 -1.1682 17 8 5.5292 2.9109 -2.2168 18 6 7.6428 2.8212 -1.1705 19 6 8.1506 2.8140 -2.6137 20 6 9.6803 2.7805 -2.6160 21 1 10.0766 3.5860 -1.9978 22 6 10.2187 2.8992 -4.0641 23 6 11.6064 2.2171 -3.9195 24 1 12.3501 2.9247 -3.5530 25 6 12.0428 1.6068 -5.2264 26 8 11.3328 1.6929 -6.2003 27 8 13.2207 0.9685 -5.3089 28 6 11.3252 1.1219 -2.8684 29 8 10.1518 1.5085 -2.1436 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.9558 0.7809 -0.8907 34 1 3.9565 0.7806 0.8893 35 1 3.6107 3.2365 0.8889 36 1 3.6102 3.2359 -0.8911 37 1 4.3733 4.9601 2.8620 38 1 7.9878 1.9224 -0.6594 39 1 8.0259 3.7019 -0.6550 40 1 7.7675 1.9332 -3.1292 41 1 7.8057 3.7128 -3.1248 42 1 9.5847 2.3555 -4.7646 43 1 10.3228 3.9429 -4.3602 44 1 13.4577 0.5937 -6.1682 45 1 11.1548 0.1671 -3.3658 46 1 12.1709 1.0387 -2.1858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606453964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:56 Heat of formation + Delta-G solvation = -262.395600 kcal Electronic energy + Delta-G solvation = -30153.879322 eV Core-core repulsion = 25622.842407 eV Total energy + Delta-G solvation = -4531.036915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.160 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.93447 -40.02345 -39.24819 -38.47053 -36.47930 -36.16892 -35.00405 -33.13500 -32.60960 -31.91781 -30.74583 -28.66047 -27.42898 -25.02672 -24.58230 -24.49798 -22.61964 -21.02017 -20.68352 -20.06907 -19.01944 -18.37069 -17.48750 -17.34903 -16.92539 -16.40170 -16.21954 -16.09750 -15.79836 -15.56167 -15.45365 -14.72704 -14.39460 -14.23387 -14.17068 -13.59709 -13.49844 -13.29733 -13.16477 -12.68301 -12.57349 -12.17799 -12.16239 -11.99792 -11.88287 -11.75724 -11.61084 -11.43828 -11.21762 -11.11596 -11.01145 -10.84584 -10.72950 -10.59333 -10.51812 -10.42398 -10.26402 -10.03833 -9.95964 -9.52039 -9.16585 -8.42840 -7.56149 -6.38664 -4.06512 1.81776 2.60503 2.69532 3.07353 3.11793 3.21244 3.22553 3.70298 3.89660 3.97989 4.11438 4.57596 4.59992 4.67483 4.92146 4.98964 5.01597 5.11038 5.25941 5.32552 5.34020 5.43577 5.46349 5.59309 5.62261 5.66431 5.82639 5.86169 5.87592 5.97817 6.09305 6.14210 6.31532 6.32814 6.52068 6.65345 6.76209 6.81259 6.95204 7.00276 7.33950 7.51864 7.52302 7.89767 8.20864 8.35405 9.05780 9.49181 9.92535 10.62968 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002561 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.981306 B =10928.740857 C =12555.623066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.505 6.505 5 C -0.123 4.123 6 C 0.122 3.878 7 N -0.440 5.440 8 C -0.348 4.348 9 H 0.094 0.906 10 C 0.045 3.955 11 N -0.854 5.854 12 Si 0.913 3.087 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.471 3.529 17 O -0.606 6.606 18 C -0.116 4.116 19 C -0.099 4.099 20 C 0.082 3.918 21 H 0.079 0.921 22 C -0.137 4.137 23 C -0.123 4.123 24 H 0.123 0.877 25 C 0.490 3.510 26 O -0.506 6.506 27 O -0.515 6.515 28 C 0.069 3.931 29 O -0.366 6.366 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.272 0.728 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.411 0.589 45 H 0.070 0.930 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.629 -6.927 -6.542 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.392 6.392 5 C -0.162 4.162 6 C -0.002 4.002 7 N -0.158 5.158 8 C -0.476 4.476 9 H 0.112 0.888 10 C -0.162 4.162 11 N -0.490 5.490 12 Si 0.739 3.261 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.197 1.197 16 C 0.261 3.739 17 O -0.493 6.493 18 C -0.155 4.155 19 C -0.137 4.137 20 C 0.025 3.975 21 H 0.097 0.903 22 C -0.174 4.174 23 C -0.142 4.142 24 H 0.141 0.859 25 C 0.332 3.668 26 O -0.393 6.393 27 O -0.328 6.328 28 C -0.008 4.008 29 O -0.286 6.286 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.270 0.730 45 H 0.088 0.912 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.512 -6.413 -6.630 13.250 hybrid contribution 0.405 -0.255 0.263 0.546 sum 9.917 -6.668 -6.367 13.541 Atomic orbital electron populations 1.23162 0.77423 1.02998 1.02322 1.86542 1.22711 1.34458 1.84680 1.24100 0.92420 0.80869 0.71718 1.90650 1.67270 1.36221 1.45042 1.21898 0.85743 1.03466 1.05100 1.21213 0.82523 0.90911 1.05591 1.43408 1.04354 1.63154 1.04926 1.19418 1.05362 1.35642 0.87165 0.88810 1.25376 0.96485 0.94085 1.00274 1.69849 1.29360 1.17550 1.32239 0.86220 0.78990 0.78906 0.81943 1.19630 1.20971 1.19710 1.20535 0.89732 0.79804 0.83830 1.90529 1.70618 1.56011 1.32095 1.21306 0.93916 1.03964 0.96356 1.21482 0.90570 1.03783 0.97902 1.23186 0.96194 0.85958 0.92178 0.90350 1.23374 0.92799 1.02367 0.98881 1.22665 1.00561 0.99579 0.91372 0.85888 1.23068 0.78224 0.74889 0.90617 1.90753 1.53859 1.55965 1.38772 1.84540 1.38266 1.67487 1.42464 1.22944 0.89630 0.95866 0.92382 1.88536 1.42599 1.37499 1.59944 0.88643 0.92181 0.92193 0.88645 0.87740 0.86429 0.91613 0.91720 0.89663 0.89623 0.90905 0.90091 0.88482 0.88912 0.72992 0.91179 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.14 10.57 -39.25 -0.41 -6.55 16 3 C 0.47 9.18 7.96 36.01 0.29 9.47 16 4 O -0.51 -11.23 15.73 -18.76 -0.30 -11.53 16 5 C -0.12 -2.50 6.13 -27.88 -0.17 -2.67 16 6 C 0.12 2.96 4.34 -4.04 -0.02 2.94 16 7 N -0.44 -10.80 2.54 -114.81 -0.29 -11.09 16 8 C -0.35 -8.48 8.73 -14.93 -0.13 -8.61 16 9 H 0.09 2.16 6.95 -52.49 -0.36 1.79 16 10 C 0.04 1.10 4.95 -17.46 -0.09 1.01 16 11 N -0.85 -22.48 11.34 55.50 0.63 -21.85 16 12 Si 0.91 18.95 29.61 -169.99 -5.03 13.91 16 13 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 14 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 16 C 0.47 11.12 7.62 -10.99 -0.08 11.04 16 17 O -0.61 -15.63 15.54 5.55 0.09 -15.54 16 18 C -0.12 -2.20 4.26 -27.88 -0.12 -2.32 16 19 C -0.10 -1.62 4.23 -26.73 -0.11 -1.73 16 20 C 0.08 1.05 3.41 -25.70 -0.09 0.96 16 21 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 22 C -0.14 -1.49 5.70 -24.48 -0.14 -1.63 16 23 C -0.12 -1.11 3.50 -89.83 -0.31 -1.42 16 24 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 25 C 0.49 4.73 7.50 36.01 0.27 5.00 16 26 O -0.51 -6.57 16.45 -18.75 -0.31 -6.88 16 27 O -0.52 -3.53 13.42 -39.25 -0.53 -4.06 16 28 C 0.07 0.69 7.39 37.88 0.28 0.97 16 29 O -0.37 -5.00 10.81 -35.23 -0.38 -5.38 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.10 1.88 8.14 -51.93 -0.42 1.45 16 34 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 35 H 0.12 3.11 5.32 -51.93 -0.28 2.83 16 36 H 0.07 1.71 7.32 -51.93 -0.38 1.33 16 37 H 0.27 6.82 8.32 -40.82 -0.34 6.48 16 38 H 0.08 1.59 7.53 -51.93 -0.39 1.20 16 39 H 0.09 1.60 8.09 -51.93 -0.42 1.18 16 40 H 0.07 1.27 8.12 -51.92 -0.42 0.85 16 41 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 42 H 0.10 1.22 7.29 -51.93 -0.38 0.84 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.41 1.14 9.10 45.56 0.41 1.55 16 45 H 0.07 0.69 7.81 -51.93 -0.41 0.29 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -33.38 390.79 -5.99 -39.37 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.98 Total: 9.19 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 0.64 Total: 14.53 kcal Atomic # 7 Polarization: -33.28 SS G_CDS: 0.34 Total: -32.94 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.84 Total: -49.95 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.38 -5.99 -39.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606453964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -223.023 kcal (2) G-P(sol) polarization free energy of solvation -33.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -262.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds