Wall clock time and date at job start Wed Apr 1 2020 02:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 117.00007 * 2 1 4 4 O 1.20833 * 120.00100 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00258 * 180.02562 * 3 2 1 6 6 C 1.52994 * 109.47356 * 179.97438 * 5 3 2 7 7 N 1.46504 * 109.47371 * 179.97438 * 6 5 3 8 8 C 1.37099 * 120.00039 * 270.00328 * 7 6 5 9 9 H 1.07997 * 120.00285 * 145.29925 * 8 7 6 10 10 C 1.38959 * 119.99784 * 325.30162 * 8 7 6 11 11 N 1.31411 * 119.99755 * 337.27038 * 10 8 7 12 12 Si 1.86801 * 119.99800 * 157.27231 * 10 8 7 13 13 H 1.48502 * 109.47067 * 60.00054 * 12 10 8 14 14 H 1.48498 * 109.46683 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47043 * 299.99802 * 12 10 8 16 16 C 1.34774 * 119.99933 * 89.99448 * 7 6 5 17 17 O 1.21294 * 120.00291 * 4.89283 * 16 7 6 18 18 C 1.50700 * 119.99956 * 184.88752 * 16 7 6 19 19 C 1.52998 * 109.47344 * 177.72876 * 18 16 7 20 20 C 1.53001 * 109.47440 * 180.02562 * 19 18 16 21 21 H 1.08998 * 110.27503 * 307.09339 * 20 19 18 22 22 C 1.54944 * 110.31219 * 184.99694 * 20 19 18 23 23 C 1.55302 * 100.94301 * 204.64079 * 22 20 19 24 24 H 1.08999 * 110.84771 * 275.94233 * 23 22 20 25 25 C 1.50701 * 110.84649 * 152.32113 * 23 22 20 26 26 O 1.20824 * 120.00082 * 0.02562 * 25 23 22 27 27 O 1.34228 * 119.99801 * 179.97438 * 25 23 22 28 28 C 1.54384 * 102.25225 * 34.13411 * 23 22 20 29 29 O 1.43239 * 107.59009 * 338.64305 * 28 23 22 30 30 H 1.08996 * 109.47309 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46926 * 300.00234 * 1 2 3 32 32 H 1.08995 * 109.46901 * 59.99604 * 1 2 3 33 33 H 1.08996 * 109.47272 * 59.99449 * 5 3 2 34 34 H 1.09011 * 109.47008 * 299.99821 * 5 3 2 35 35 H 1.09003 * 109.47467 * 59.99865 * 6 5 3 36 36 H 1.08997 * 109.47256 * 299.99369 * 6 5 3 37 37 H 0.97002 * 119.99390 * 185.00597 * 11 10 8 38 38 H 1.09001 * 109.47276 * 57.72578 * 18 16 7 39 39 H 1.09003 * 109.47320 * 297.72927 * 18 16 7 40 40 H 1.09007 * 109.46756 * 299.99831 * 19 18 16 41 41 H 1.09001 * 109.47177 * 59.99641 * 19 18 16 42 42 H 1.09002 * 111.12086 * 322.56261 * 22 20 19 43 43 H 1.08993 * 111.12481 * 86.71621 * 22 20 19 44 44 H 0.96701 * 116.99878 * 180.02562 * 27 25 23 45 45 H 1.08998 * 109.83042 * 98.15909 * 28 23 22 46 46 H 1.08999 * 109.82890 * 219.13111 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4632 2.8188 -0.0011 8 6 6.1477 2.8551 1.1863 9 1 7.1102 2.3724 1.2697 10 6 5.6029 3.5129 2.2824 11 7 4.7002 4.4510 2.1038 12 14 6.1539 3.0635 4.0098 13 1 7.6145 3.2979 4.1402 14 1 5.4282 3.9046 4.9953 15 1 5.8575 1.6314 4.2672 16 6 6.1362 2.8536 -1.1682 17 8 5.5292 2.9109 -2.2168 18 6 7.6428 2.8212 -1.1705 19 6 8.1506 2.8140 -2.6137 20 6 9.6803 2.7805 -2.6160 21 1 10.0766 3.5860 -1.9978 22 6 10.2187 2.8992 -4.0641 23 6 11.6064 2.2171 -3.9195 24 1 12.3501 2.9247 -3.5530 25 6 12.0428 1.6068 -5.2264 26 8 11.3328 1.6929 -6.2003 27 8 13.2207 0.9685 -5.3089 28 6 11.3252 1.1219 -2.8684 29 8 10.1518 1.5085 -2.1436 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 3.9558 0.7809 -0.8907 34 1 3.9565 0.7806 0.8893 35 1 3.6107 3.2365 0.8889 36 1 3.6102 3.2359 -0.8911 37 1 4.3733 4.9601 2.8620 38 1 7.9878 1.9224 -0.6594 39 1 8.0259 3.7019 -0.6550 40 1 7.7675 1.9332 -3.1292 41 1 7.8057 3.7128 -3.1248 42 1 9.5847 2.3555 -4.7646 43 1 10.3228 3.9429 -4.3602 44 1 13.4577 0.5937 -6.1682 45 1 11.1548 0.1671 -3.3658 46 1 12.1709 1.0387 -2.1858 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606453964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:55 Heat of formation + Delta-G solvation = -284.851776 kcal Electronic energy + Delta-G solvation = -30154.853095 eV Core-core repulsion = 25622.842407 eV Total energy + Delta-G solvation = -4532.010688 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.160 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.71981 -41.57454 -40.53191 -39.90090 -37.68892 -37.17006 -36.85961 -34.52436 -33.77266 -33.46303 -32.47309 -29.84699 -28.65126 -26.90125 -25.96985 -25.27685 -24.08817 -22.07050 -21.77300 -21.40183 -20.85984 -19.08450 -18.99645 -18.34073 -18.28357 -17.84854 -17.68069 -17.56866 -17.34071 -16.51722 -16.37419 -16.30106 -15.95988 -15.81587 -15.35746 -15.03772 -14.69284 -14.36760 -14.29162 -14.18714 -13.97699 -13.76986 -13.46991 -13.21899 -13.07188 -12.92712 -12.79762 -12.71536 -12.66013 -12.45802 -12.42120 -12.10389 -12.09142 -11.97670 -11.85729 -11.79225 -11.72161 -11.62463 -11.60864 -11.02622 -10.45494 -10.32971 -9.49948 -8.26932 -6.01281 1.09100 1.10785 1.46772 1.53731 1.61496 1.65181 1.97467 2.06422 2.37459 2.82916 2.98285 3.09568 3.20990 3.76361 3.83320 3.91743 3.99512 4.07926 4.14891 4.21606 4.26740 4.30237 4.30418 4.39943 4.44152 4.55856 4.58767 4.67795 4.72496 4.75701 4.83307 4.87670 4.91163 5.07585 5.08888 5.25401 5.25838 5.39428 5.41503 5.55522 5.59382 6.01321 6.06146 6.43698 6.68022 6.93127 7.15354 7.60039 8.03785 8.75677 Molecular weight = 343.16amu Principal moments of inertia in cm(-1) A = 0.011270 B = 0.002561 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2483.981306 B =10928.740857 C =12555.623066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.113 4.113 6 C 0.126 3.874 7 N -0.451 5.451 8 C -0.357 4.357 9 H 0.109 0.891 10 C 0.003 3.997 11 N -0.894 5.894 12 Si 0.982 3.018 13 H -0.257 1.257 14 H -0.291 1.291 15 H -0.264 1.264 16 C 0.456 3.544 17 O -0.636 6.636 18 C -0.103 4.103 19 C -0.093 4.093 20 C 0.088 3.912 21 H 0.098 0.902 22 C -0.136 4.136 23 C -0.114 4.114 24 H 0.156 0.844 25 C 0.498 3.502 26 O -0.547 6.547 27 O -0.506 6.506 28 C 0.065 3.935 29 O -0.391 6.391 30 H 0.139 0.861 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.271 0.729 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.430 0.570 45 H 0.067 0.933 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.887 -8.333 -5.566 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.002 3.998 7 N -0.169 5.169 8 C -0.484 4.484 9 H 0.127 0.873 10 C -0.201 4.201 11 N -0.531 5.531 12 Si 0.805 3.195 13 H -0.181 1.181 14 H -0.216 1.216 15 H -0.189 1.189 16 C 0.248 3.752 17 O -0.525 6.525 18 C -0.143 4.143 19 C -0.131 4.131 20 C 0.032 3.968 21 H 0.115 0.885 22 C -0.173 4.173 23 C -0.133 4.133 24 H 0.173 0.827 25 C 0.341 3.659 26 O -0.437 6.437 27 O -0.319 6.319 28 C -0.012 4.012 29 O -0.311 6.311 30 H 0.157 0.843 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.136 0.864 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.292 0.708 45 H 0.085 0.915 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.809 -7.869 -5.662 15.279 hybrid contribution -0.353 0.121 -0.106 0.388 sum 11.456 -7.748 -5.768 14.985 Atomic orbital electron populations 1.23589 0.74746 1.05914 1.02447 1.86508 1.25192 1.32301 1.83850 1.23836 0.92103 0.81300 0.71046 1.90640 1.67837 1.37492 1.46714 1.21652 0.86811 1.00751 1.05963 1.20971 0.82898 0.93107 1.02842 1.43670 1.04413 1.63205 1.05587 1.19805 1.05961 1.35582 0.87064 0.87303 1.26246 0.96381 0.93491 1.03951 1.69988 1.30994 1.18895 1.33218 0.85161 0.79062 0.78563 0.76721 1.18150 1.21648 1.18900 1.21404 0.91720 0.78980 0.83137 1.90499 1.71721 1.57232 1.33034 1.21261 0.90335 1.04321 0.98356 1.21391 0.93546 1.02521 0.95653 1.23073 0.93427 0.86498 0.93841 0.88454 1.23288 0.93689 1.03380 0.96972 1.22661 1.00138 0.99658 0.90870 0.82668 1.23119 0.78310 0.74285 0.90188 1.90752 1.55170 1.57635 1.40174 1.84494 1.36700 1.66772 1.43966 1.23127 0.89167 0.95897 0.92994 1.88495 1.44194 1.37763 1.60686 0.84309 0.92096 0.92160 0.88043 0.86425 0.88586 0.94756 0.91889 0.89018 0.89066 0.92831 0.90856 0.90813 0.87222 0.70817 0.91519 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.72 10.57 -51.39 -0.54 -12.26 16 3 C 0.47 18.81 7.96 71.24 0.57 19.38 16 4 O -0.54 -24.58 15.73 21.94 0.35 -24.23 16 5 C -0.11 -4.67 6.13 29.85 0.18 -4.49 16 6 C 0.13 6.39 4.34 86.38 0.37 6.77 16 7 N -0.45 -22.64 2.54 -635.53 -1.61 -24.26 16 8 C -0.36 -17.34 8.73 84.04 0.73 -16.60 16 9 H 0.11 4.86 6.95 -2.91 -0.02 4.84 16 10 C 0.00 0.12 4.95 84.93 0.42 0.54 16 11 N -0.89 -48.11 11.34 21.67 0.25 -47.86 16 12 Si 0.98 38.18 29.61 68.60 2.03 40.21 16 13 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 14 H -0.29 -11.53 7.11 99.48 0.71 -10.82 16 15 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 16 C 0.46 22.12 7.62 87.66 0.67 22.79 16 17 O -0.64 -34.18 15.54 -3.07 -0.05 -34.23 16 18 C -0.10 -3.92 4.26 29.85 0.13 -3.80 16 19 C -0.09 -3.05 4.23 30.59 0.13 -2.92 16 20 C 0.09 2.15 3.41 31.26 0.11 2.25 16 21 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 22 C -0.14 -2.79 5.70 32.05 0.18 -2.60 16 23 C -0.11 -1.77 3.50 -10.28 -0.04 -1.81 16 24 H 0.16 1.44 8.14 -2.39 -0.02 1.42 16 25 C 0.50 8.65 7.50 71.24 0.53 9.18 16 26 O -0.55 -13.82 16.45 21.97 0.36 -13.46 16 27 O -0.51 -5.55 13.42 -51.39 -0.69 -6.24 16 28 C 0.06 1.14 7.39 72.45 0.54 1.68 16 29 O -0.39 -10.04 10.81 -148.98 -1.61 -11.65 16 30 H 0.14 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 32 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 33 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 34 H 0.12 4.53 8.14 -2.38 -0.02 4.51 16 35 H 0.10 5.31 5.32 -2.39 -0.01 5.30 16 36 H 0.03 1.90 7.32 -2.39 -0.02 1.88 16 37 H 0.27 13.92 8.32 -92.71 -0.77 13.15 16 38 H 0.09 3.37 7.53 -2.39 -0.02 3.35 16 39 H 0.09 3.36 8.09 -2.39 -0.02 3.34 16 40 H 0.05 1.93 8.12 -2.38 -0.02 1.91 16 41 H 0.07 2.48 8.08 -2.39 -0.02 2.46 16 42 H 0.07 1.88 7.29 -2.39 -0.02 1.86 16 43 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.43 1.31 9.10 -74.06 -0.67 0.64 16 45 H 0.07 1.20 7.81 -2.39 -0.02 1.19 16 46 H 0.11 1.36 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -75.04 390.79 4.54 -70.50 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.34 Total: 31.30 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 5.72 Total: 32.18 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -1.37 Total: -72.11 kcal Atomic # 8 Polarization: -99.89 SS G_CDS: -2.18 Total: -102.07 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -75.04 4.54 -70.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606453964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -214.357 kcal (2) G-P(sol) polarization free energy of solvation -75.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -289.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -284.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds