Wall clock time and date at job start Wed Apr 1 2020 01:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35215 * 125.74953 * 2 1 4 4 C 1.36477 * 106.04392 * 180.12776 * 3 2 1 5 5 C 1.48455 * 126.90245 * 179.85003 * 4 3 2 6 6 C 1.39367 * 120.08793 * 4.71588 * 5 4 3 7 7 C 1.38047 * 120.02611 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.18676 * 359.97438 * 7 6 5 9 9 C 1.38920 * 120.17161 * 0.05442 * 8 7 6 10 10 N 1.39952 * 120.01230 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00713 * 143.82085 * 10 9 8 12 12 O 1.21589 * 119.99258 * 4.71606 * 11 10 9 13 13 N 1.34768 * 120.00304 * 184.71842 * 11 10 9 14 14 C 1.47588 * 134.48903 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11467 * 155.35922 * 14 13 11 16 16 O 1.42905 * 113.73770 * 269.14847 * 15 14 13 17 17 C 1.50703 * 113.74251 * 137.95320 * 15 14 13 18 18 H 1.07995 * 120.00210 * 4.98183 * 17 15 14 19 19 C 1.37877 * 119.99871 * 184.98319 * 17 15 14 20 20 N 1.31517 * 119.99795 * 12.88070 * 19 17 15 21 21 Si 1.86793 * 120.00019 * 192.87659 * 19 17 15 22 22 H 1.48503 * 109.47249 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47191 * 300.00268 * 21 19 17 24 24 H 1.48500 * 109.47174 * 60.00035 * 21 19 17 25 25 C 1.47586 * 134.49575 * 359.97438 * 13 11 10 26 26 C 1.38685 * 119.97629 * 0.24138 * 9 8 7 27 27 N 1.34505 * 106.18977 * 359.59514 * 4 3 2 28 28 N 1.28608 * 108.78407 * 0.25671 * 27 4 3 29 29 H 1.09000 * 109.47004 * 270.31172 * 1 2 3 30 30 H 1.09002 * 109.47586 * 30.31371 * 1 2 3 31 31 H 1.09003 * 109.46980 * 150.31430 * 1 2 3 32 32 H 1.08001 * 126.97571 * 359.97438 * 3 2 1 33 33 H 1.08008 * 119.98786 * 359.97414 * 6 5 4 34 34 H 1.07999 * 119.90672 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.91706 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00011 * 323.81278 * 10 9 8 37 37 H 1.08997 * 113.77398 * 41.05580 * 14 13 11 38 38 H 1.09001 * 113.76376 * 269.65503 * 14 13 11 39 39 H 0.96704 * 113.99719 * 172.07828 * 16 15 14 40 40 H 0.96995 * 120.00713 * 5.56605 * 20 19 17 41 41 H 1.08994 * 113.76669 * 90.34150 * 25 13 11 42 42 H 1.09004 * 113.76317 * 318.94022 * 25 13 11 43 43 H 1.08001 * 120.09383 * 179.70714 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2550 1.0974 0.0000 4 6 3.5398 0.6372 -0.0029 5 6 4.7793 1.4542 -0.0072 6 6 4.7015 2.8423 0.0905 7 6 5.8549 3.6008 0.0870 8 6 7.0896 2.9876 -0.0129 9 6 7.1764 1.6046 -0.1113 10 7 8.4283 0.9873 -0.2128 11 6 8.6451 -0.1999 0.3873 12 8 7.7301 -0.7756 0.9440 13 7 9.8758 -0.7489 0.3704 14 6 10.4607 -1.9932 0.9068 15 6 11.5205 -1.8485 -0.2003 16 8 11.1751 -2.5125 -1.4177 17 6 12.9229 -2.1550 0.2584 18 1 13.0956 -2.5219 1.2594 19 6 13.9855 -1.9671 -0.5998 20 7 13.8182 -1.2908 -1.7152 21 14 15.6628 -2.6730 -0.1782 22 1 16.6276 -2.3338 -1.2549 23 1 16.1334 -2.0970 1.1071 24 1 15.5609 -4.1491 -0.0512 25 6 11.1799 -0.3472 -0.1919 26 6 6.0219 0.8363 -0.1146 27 7 3.4574 -0.7053 0.0046 28 7 2.2167 -1.0440 0.0062 29 1 -0.3633 0.0056 1.0277 30 1 -0.3634 0.8871 -0.5187 31 1 -0.3633 -0.8928 -0.5090 32 1 1.9343 2.1287 -0.0004 33 1 3.7384 3.3248 0.1691 34 1 5.7924 4.6763 0.1632 35 1 7.9892 3.5852 -0.0148 36 1 9.1401 1.4138 -0.7151 37 1 9.8191 -2.8665 0.7894 38 1 10.8619 -1.8910 1.9151 39 1 11.7760 -2.3254 -2.1519 40 1 12.9704 -0.8557 -1.8962 41 1 11.7922 0.2383 0.4937 42 1 11.1123 0.0936 -1.1865 43 1 6.0869 -0.2387 -0.1958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649894645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:52 Heat of formation + Delta-G solvation = 96.853963 kcal Electronic energy + Delta-G solvation = -28713.950589 eV Core-core repulsion = 24570.386326 eV Total energy + Delta-G solvation = -4143.564263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.37283 -40.37742 -39.10650 -37.65102 -35.11801 -34.42485 -34.29320 -32.38050 -32.34283 -30.31734 -29.46183 -28.17221 -27.83344 -25.54329 -24.87409 -23.92254 -23.05366 -21.66039 -21.12115 -20.40996 -19.09954 -18.28867 -18.06635 -17.13356 -16.83481 -16.72347 -16.21233 -15.51890 -15.38472 -14.96758 -14.63367 -14.43117 -14.17715 -13.91079 -13.88024 -13.79134 -13.67544 -13.34378 -12.91815 -12.71255 -12.58866 -12.15340 -12.06658 -11.76309 -11.60078 -11.38072 -11.14151 -10.96610 -10.92967 -10.64180 -10.55732 -10.22190 -10.18452 -9.80087 -9.70644 -9.33295 -8.83343 -8.49695 -8.37269 -8.12868 -7.76027 -6.69491 -4.49029 0.85716 1.42840 1.52076 2.07713 2.58638 2.83812 3.30827 3.35287 3.52695 3.54584 3.95112 3.97475 4.16617 4.23954 4.33086 4.51855 4.52584 4.77406 4.81049 4.82367 4.96607 5.09313 5.16864 5.29086 5.33443 5.56497 5.65096 5.67023 5.74552 5.97323 6.06669 6.11805 6.20443 6.27892 6.32593 6.35544 6.40526 6.49284 6.56024 6.68127 6.77135 7.14062 7.48440 7.64719 8.08531 8.33425 8.42578 8.47049 8.84425 8.94316 9.21432 10.62080 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002197 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.399286 B =12739.376517 C =13638.454073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.296 5.296 3 C -0.043 4.043 4 C 0.028 3.972 5 C 0.004 3.996 6 C -0.129 4.129 7 C -0.100 4.100 8 C -0.146 4.146 9 C 0.178 3.822 10 N -0.689 5.689 11 C 0.720 3.280 12 O -0.582 6.582 13 N -0.649 5.649 14 C 0.145 3.855 15 C 0.217 3.783 16 O -0.565 6.565 17 C -0.615 4.615 18 H 0.066 0.934 19 C 0.036 3.964 20 N -0.898 5.898 21 Si 1.068 2.932 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.069 3.931 26 C -0.091 4.091 27 N -0.245 5.245 28 N -0.085 5.085 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.193 0.807 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.406 0.594 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.375 0.625 40 H 0.267 0.733 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.379 12.536 1.398 24.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.089 5.089 3 C -0.194 4.194 4 C -0.109 4.109 5 C 0.001 3.999 6 C -0.149 4.149 7 C -0.119 4.119 8 C -0.167 4.167 9 C 0.082 3.918 10 N -0.336 5.336 11 C 0.424 3.576 12 O -0.460 6.460 13 N -0.387 5.387 14 C 0.023 3.977 15 C 0.176 3.824 16 O -0.372 6.372 17 C -0.653 4.653 18 H 0.084 0.916 19 C -0.170 4.170 20 N -0.535 5.535 21 Si 0.894 3.106 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.054 4.054 26 C -0.112 4.112 27 N -0.112 5.112 28 N -0.064 5.064 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.210 0.790 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.224 0.776 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -21.161 10.129 1.623 23.516 hybrid contribution -0.993 2.012 0.079 2.245 sum -22.154 12.140 1.701 25.320 Atomic orbital electron populations 1.22271 0.72695 1.05958 1.05025 1.47175 1.09416 1.04881 1.47424 1.23469 0.90552 0.94590 1.10748 1.20424 0.92657 0.90769 1.07012 1.17481 0.89276 0.91448 1.01699 1.20903 0.98610 0.92015 1.03353 1.20714 0.91389 0.99548 1.00199 1.20984 0.98654 0.92774 1.04286 1.17447 0.84476 0.91152 0.98731 1.42602 1.12890 1.22143 1.55964 1.15500 0.82730 0.80113 0.79245 1.90914 1.41901 1.62514 1.50683 1.49325 1.05957 1.25030 1.58341 1.23223 0.91764 0.84907 0.97837 1.20123 0.92789 0.86301 0.83155 1.86273 1.56447 1.72626 1.21849 1.22227 0.90463 1.49922 1.02713 0.91594 1.25993 1.04116 0.93887 0.92977 1.70950 1.27901 1.29249 1.25396 0.83562 0.74563 0.76486 0.75943 1.20590 1.21121 1.20976 1.24455 0.80574 1.03005 0.97378 1.21446 0.89437 1.02139 0.98195 1.75430 1.08666 1.11635 1.15465 1.78310 0.96546 1.11991 1.19578 0.89043 0.88281 0.87947 0.78973 0.86089 0.85410 0.85615 0.75837 0.90820 0.89380 0.77620 0.92089 0.89590 0.91968 0.83109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.38 59.85 0.68 0.98 16 2 N -0.30 -2.89 3.73 -67.78 -0.25 -3.14 16 3 C -0.04 -0.41 11.01 -16.70 -0.18 -0.59 16 4 C 0.03 0.40 6.98 -83.12 -0.58 -0.18 16 5 C 0.00 0.05 5.87 -104.91 -0.62 -0.56 16 6 C -0.13 -1.36 9.58 -39.23 -0.38 -1.74 16 7 C -0.10 -1.01 10.03 -39.66 -0.40 -1.41 16 8 C -0.15 -1.77 9.96 -39.34 -0.39 -2.17 16 9 C 0.18 2.82 6.27 -83.73 -0.53 2.29 16 10 N -0.69 -11.70 5.33 -14.25 -0.08 -11.78 16 11 C 0.72 15.21 8.60 -86.92 -0.75 14.46 16 12 O -0.58 -14.06 14.59 5.29 0.08 -13.98 16 13 N -0.65 -13.75 3.61 -184.06 -0.66 -14.42 16 14 C 0.14 3.20 8.23 -2.97 -0.02 3.17 16 15 C 0.22 5.12 1.08 -90.84 -0.10 5.02 16 16 O -0.56 -14.01 13.46 -35.23 -0.47 -14.48 16 17 C -0.62 -15.49 8.57 -34.44 -0.30 -15.79 16 18 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 19 C 0.04 0.91 5.27 -17.82 -0.09 0.81 16 20 N -0.90 -23.39 12.81 55.43 0.71 -22.68 16 21 Si 1.07 22.68 29.92 -169.99 -5.09 17.59 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.29 -5.80 7.11 56.52 0.40 -5.39 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 C 0.07 1.43 6.92 -2.97 -0.02 1.41 16 26 C -0.09 -1.57 8.34 -39.06 -0.33 -1.90 16 27 N -0.25 -4.23 12.17 33.06 0.40 -3.83 16 28 N -0.08 -1.23 13.14 60.35 0.79 -0.44 16 29 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.19 0.92 7.42 -52.49 -0.39 0.53 16 33 H 0.12 0.85 7.13 -52.48 -0.37 0.47 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.41 5.91 8.44 -40.82 -0.34 5.57 16 37 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 39 H 0.37 9.05 6.88 45.56 0.31 9.36 16 40 H 0.27 6.74 5.48 -40.82 -0.22 6.52 16 41 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 42 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 43 H 0.15 3.16 6.17 -52.49 -0.32 2.84 16 LS Contribution 370.22 15.07 5.58 5.58 Total: -1.00 -35.08 370.22 -7.32 -42.40 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: -4.33 Total: 15.38 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -3.99 Total: 3.80 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.91 Total: -56.29 kcal Atomic # 8 Polarization: -28.07 SS G_CDS: -0.40 Total: -28.46 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.09 Total: 17.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.08 -7.32 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649894645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.254 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds