Wall clock time and date at job start Wed Apr 1 2020 01:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35215 * 125.74953 * 2 1 4 4 C 1.36477 * 106.04392 * 180.12776 * 3 2 1 5 5 C 1.48455 * 126.90245 * 179.85003 * 4 3 2 6 6 C 1.39367 * 120.08793 * 4.71588 * 5 4 3 7 7 C 1.38047 * 120.02611 * 179.97438 * 6 5 4 8 8 C 1.38218 * 120.18676 * 359.97438 * 7 6 5 9 9 C 1.38920 * 120.17161 * 0.05442 * 8 7 6 10 10 N 1.39952 * 120.01230 * 179.97438 * 9 8 7 11 11 C 1.34781 * 120.00713 * 143.82085 * 10 9 8 12 12 O 1.21589 * 119.99258 * 4.71606 * 11 10 9 13 13 N 1.34768 * 120.00304 * 184.71842 * 11 10 9 14 14 C 1.47588 * 134.48903 * 179.97438 * 13 11 10 15 15 C 1.53947 * 86.11467 * 155.35922 * 14 13 11 16 16 O 1.42905 * 113.73770 * 269.14847 * 15 14 13 17 17 C 1.50703 * 113.74251 * 137.95320 * 15 14 13 18 18 H 1.07995 * 120.00210 * 4.98183 * 17 15 14 19 19 C 1.37877 * 119.99871 * 184.98319 * 17 15 14 20 20 N 1.31517 * 119.99795 * 12.88070 * 19 17 15 21 21 Si 1.86793 * 120.00019 * 192.87659 * 19 17 15 22 22 H 1.48503 * 109.47249 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47191 * 300.00268 * 21 19 17 24 24 H 1.48500 * 109.47174 * 60.00035 * 21 19 17 25 25 C 1.47586 * 134.49575 * 359.97438 * 13 11 10 26 26 C 1.38685 * 119.97629 * 0.24138 * 9 8 7 27 27 N 1.34505 * 106.18977 * 359.59514 * 4 3 2 28 28 N 1.28608 * 108.78407 * 0.25671 * 27 4 3 29 29 H 1.09000 * 109.47004 * 270.31172 * 1 2 3 30 30 H 1.09002 * 109.47586 * 30.31371 * 1 2 3 31 31 H 1.09003 * 109.46980 * 150.31430 * 1 2 3 32 32 H 1.08001 * 126.97571 * 359.97438 * 3 2 1 33 33 H 1.08008 * 119.98786 * 359.97414 * 6 5 4 34 34 H 1.07999 * 119.90672 * 180.02562 * 7 6 5 35 35 H 1.08001 * 119.91706 * 180.02562 * 8 7 6 36 36 H 0.97001 * 120.00011 * 323.81278 * 10 9 8 37 37 H 1.08997 * 113.77398 * 41.05580 * 14 13 11 38 38 H 1.09001 * 113.76376 * 269.65503 * 14 13 11 39 39 H 0.96704 * 113.99719 * 172.07828 * 16 15 14 40 40 H 0.96995 * 120.00713 * 5.56605 * 20 19 17 41 41 H 1.08994 * 113.76669 * 90.34150 * 25 13 11 42 42 H 1.09004 * 113.76317 * 318.94022 * 25 13 11 43 43 H 1.08001 * 120.09383 * 179.70714 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2550 1.0974 0.0000 4 6 3.5398 0.6372 -0.0029 5 6 4.7793 1.4542 -0.0072 6 6 4.7015 2.8423 0.0905 7 6 5.8549 3.6008 0.0870 8 6 7.0896 2.9876 -0.0129 9 6 7.1764 1.6046 -0.1113 10 7 8.4283 0.9873 -0.2128 11 6 8.6451 -0.1999 0.3873 12 8 7.7301 -0.7756 0.9440 13 7 9.8758 -0.7489 0.3704 14 6 10.4607 -1.9932 0.9068 15 6 11.5205 -1.8485 -0.2003 16 8 11.1751 -2.5125 -1.4177 17 6 12.9229 -2.1550 0.2584 18 1 13.0956 -2.5219 1.2594 19 6 13.9855 -1.9671 -0.5998 20 7 13.8182 -1.2908 -1.7152 21 14 15.6628 -2.6730 -0.1782 22 1 16.6276 -2.3338 -1.2549 23 1 16.1334 -2.0970 1.1071 24 1 15.5609 -4.1491 -0.0512 25 6 11.1799 -0.3472 -0.1919 26 6 6.0219 0.8363 -0.1146 27 7 3.4574 -0.7053 0.0046 28 7 2.2167 -1.0440 0.0062 29 1 -0.3633 0.0056 1.0277 30 1 -0.3634 0.8871 -0.5187 31 1 -0.3633 -0.8928 -0.5090 32 1 1.9343 2.1287 -0.0004 33 1 3.7384 3.3248 0.1691 34 1 5.7924 4.6763 0.1632 35 1 7.9892 3.5852 -0.0148 36 1 9.1401 1.4138 -0.7151 37 1 9.8191 -2.8665 0.7894 38 1 10.8619 -1.8910 1.9151 39 1 11.7760 -2.3254 -2.1519 40 1 12.9704 -0.8557 -1.8962 41 1 11.7922 0.2383 0.4937 42 1 11.1123 0.0936 -1.1865 43 1 6.0869 -0.2387 -0.1958 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649894645.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:51 Heat of formation + Delta-G solvation = 69.334108 kcal Electronic energy + Delta-G solvation = -28715.143939 eV Core-core repulsion = 24570.386326 eV Total energy + Delta-G solvation = -4144.757614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.24205 -41.89237 -40.51560 -39.13470 -36.20937 -36.13201 -35.51137 -34.33889 -33.29289 -31.49718 -30.55402 -29.34014 -28.72969 -27.30114 -26.69829 -24.89165 -24.09016 -22.78726 -22.11907 -21.86025 -20.70273 -20.09043 -19.19635 -18.56991 -17.85259 -17.60370 -17.21145 -17.04632 -16.94871 -16.38224 -15.98854 -15.77274 -15.66908 -15.55270 -14.87305 -14.76488 -14.48723 -14.35951 -14.27395 -14.01479 -13.81368 -13.65810 -13.45070 -12.99267 -12.95384 -12.73987 -12.63793 -12.40921 -12.33647 -11.92191 -11.89976 -11.70899 -11.33631 -11.18645 -11.11495 -10.75701 -10.73490 -10.30587 -9.77002 -9.40472 -9.01584 -8.68216 -6.49053 -0.03784 0.40320 0.64427 1.30961 1.52856 1.60718 1.61824 1.65643 1.87076 1.98761 2.54804 2.67685 2.92277 2.95749 3.18882 3.43971 3.64198 3.86190 3.88544 4.05360 4.12157 4.22071 4.26479 4.33064 4.33840 4.36188 4.39747 4.56962 4.58547 4.60646 4.63257 4.68208 4.78943 4.85323 4.94414 5.11297 5.38441 5.40717 5.53761 5.60717 5.64771 5.71982 6.03929 6.08162 6.10042 6.45161 6.83052 6.91859 7.26721 7.35021 7.42134 8.64773 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021727 B = 0.002197 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.399286 B =12739.376517 C =13638.454073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.284 5.284 3 C -0.007 4.007 4 C -0.012 4.012 5 C -0.008 4.008 6 C -0.109 4.109 7 C -0.086 4.086 8 C -0.139 4.139 9 C 0.143 3.857 10 N -0.675 5.675 11 C 0.715 3.285 12 O -0.620 6.620 13 N -0.652 5.652 14 C 0.142 3.858 15 C 0.200 3.800 16 O -0.578 6.578 17 C -0.630 4.630 18 H 0.063 0.937 19 C -0.002 4.002 20 N -0.915 5.915 21 Si 1.112 2.888 22 H -0.283 1.283 23 H -0.269 1.269 24 H -0.279 1.279 25 C 0.088 3.912 26 C -0.129 4.129 27 N -0.313 5.313 28 N -0.126 5.126 29 H 0.110 0.890 30 H 0.141 0.859 31 H 0.103 0.897 32 H 0.253 0.747 33 H 0.172 0.828 34 H 0.177 0.823 35 H 0.151 0.849 36 H 0.417 0.583 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.374 0.626 40 H 0.264 0.736 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.270 16.885 1.739 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.077 5.077 3 C -0.160 4.160 4 C -0.150 4.150 5 C -0.011 4.011 6 C -0.129 4.129 7 C -0.104 4.104 8 C -0.160 4.160 9 C 0.049 3.951 10 N -0.323 5.323 11 C 0.419 3.581 12 O -0.502 6.502 13 N -0.389 5.389 14 C 0.020 3.980 15 C 0.160 3.840 16 O -0.385 6.385 17 C -0.668 4.668 18 H 0.081 0.919 19 C -0.203 4.203 20 N -0.552 5.552 21 Si 0.934 3.066 22 H -0.209 1.209 23 H -0.194 1.194 24 H -0.205 1.205 25 C -0.034 4.034 26 C -0.151 4.151 27 N -0.179 5.179 28 N -0.105 5.105 29 H 0.129 0.871 30 H 0.159 0.841 31 H 0.122 0.878 32 H 0.269 0.731 33 H 0.189 0.811 34 H 0.195 0.805 35 H 0.168 0.832 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.224 0.776 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.102 14.491 1.952 27.340 hybrid contribution -0.647 0.736 -0.038 0.980 sum -23.749 15.226 1.914 28.276 Atomic orbital electron populations 1.22848 0.69120 1.08166 1.06982 1.47713 1.11307 1.04040 1.44629 1.24214 0.88487 0.96501 1.06768 1.20829 0.94721 0.90134 1.09286 1.17762 0.88117 0.93392 1.01833 1.21443 1.01245 0.89952 1.00224 1.21321 0.89956 1.01787 0.97295 1.21329 1.00998 0.90811 1.02852 1.17763 0.83127 0.92759 1.01478 1.42386 1.13994 1.20724 1.55235 1.15704 0.81982 0.81087 0.79360 1.90895 1.42893 1.63892 1.52470 1.49254 1.06274 1.24781 1.58579 1.23220 0.91376 0.85131 0.98310 1.20321 0.92661 0.88118 0.82924 1.86264 1.56601 1.73309 1.22367 1.22427 0.91347 1.50184 1.02796 0.91912 1.27116 1.06991 0.93622 0.92594 1.71013 1.27979 1.30134 1.26049 0.82973 0.71195 0.76153 0.76276 1.20889 1.19365 1.20503 1.24225 0.80075 1.01087 0.98056 1.21180 0.92058 0.99930 1.01956 1.75359 1.10418 1.14313 1.17811 1.78190 0.96406 1.14011 1.21876 0.87137 0.84117 0.87808 0.73142 0.81084 0.80535 0.83153 0.74581 0.92365 0.87933 0.77647 0.92440 0.88796 0.90939 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.38 127.77 1.45 1.72 16 2 N -0.28 -5.06 3.73 -368.35 -1.37 -6.43 16 3 C -0.01 -0.12 11.01 83.76 0.92 0.80 16 4 C -0.01 -0.33 6.98 41.05 0.29 -0.04 16 5 C -0.01 -0.24 5.87 -20.05 -0.12 -0.36 16 6 C -0.11 -1.84 9.58 22.50 0.22 -1.63 16 7 C -0.09 -1.31 10.03 22.22 0.22 -1.09 16 8 C -0.14 -3.03 9.96 22.43 0.22 -2.81 16 9 C 0.14 4.63 6.27 38.11 0.24 4.87 16 10 N -0.68 -23.85 5.33 -317.27 -1.69 -25.54 16 11 C 0.71 31.99 8.60 179.06 1.54 33.53 16 12 O -0.62 -32.54 14.59 -4.00 -0.06 -32.60 16 13 N -0.65 -28.74 3.61 -858.33 -3.10 -31.84 16 14 C 0.14 6.57 8.23 86.48 0.71 7.28 16 15 C 0.20 9.69 1.08 -10.88 -0.01 9.68 16 16 O -0.58 -29.75 13.46 -148.98 -2.00 -31.75 16 17 C -0.63 -32.05 8.57 25.60 0.22 -31.83 16 18 H 0.06 3.16 7.85 -2.91 -0.02 3.14 16 19 C 0.00 -0.08 5.27 84.65 0.45 0.37 16 20 N -0.91 -47.76 12.81 21.45 0.27 -47.49 16 21 Si 1.11 45.39 29.92 68.60 2.05 47.44 16 22 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 24 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 25 C 0.09 3.70 6.92 86.48 0.60 4.30 16 26 C -0.13 -4.81 8.34 22.60 0.19 -4.62 16 27 N -0.31 -11.68 12.17 -49.31 -0.60 -12.28 16 28 N -0.13 -3.83 13.14 37.02 0.49 -3.35 16 29 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.14 -0.56 8.14 -2.39 -0.02 -0.58 16 31 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.25 0.64 7.42 -2.91 -0.02 0.62 16 33 H 0.17 1.13 7.13 -2.91 -0.02 1.11 16 34 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 36 H 0.42 12.30 8.44 -92.71 -0.78 11.52 16 37 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.10 4.35 8.09 -2.39 -0.02 4.33 16 39 H 0.37 18.74 6.88 -74.05 -0.51 18.23 16 40 H 0.26 13.48 5.48 -92.71 -0.51 12.97 16 41 H 0.09 3.80 8.09 -2.39 -0.02 3.78 16 42 H 0.07 2.87 7.81 -2.39 -0.02 2.85 16 43 H 0.10 4.60 6.17 -2.91 -0.02 4.58 16 Total: -1.00 -86.29 370.22 1.18 -85.11 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: 0.06 Total: 38.54 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 7.14 Total: 20.19 kcal Atomic # 7 Polarization: -120.92 SS G_CDS: -6.00 Total: -126.92 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -2.06 Total: -64.35 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.05 Total: 47.44 kcal Total: -86.29 1.18 -85.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649894645.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.445 kcal (2) G-P(sol) polarization free energy of solvation -86.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds