Wall clock time and date at job start Wed Apr 1 2020 01:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40238 * 2 1 4 4 C 1.34666 * 106.81734 * 179.97438 * 3 2 1 5 5 N 1.34126 * 108.02240 * 359.97438 * 4 3 2 6 6 C 1.30494 * 109.25549 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.64842 * 180.26194 * 6 5 4 8 8 H 1.09004 * 109.48194 * 194.71339 * 7 6 5 9 9 C 1.53090 * 109.47742 * 74.69247 * 7 6 5 10 10 C 1.53179 * 109.16305 * 182.40767 * 9 7 6 11 11 H 1.08999 * 109.54694 * 297.02449 * 10 9 7 12 12 N 1.46501 * 109.54523 * 176.84591 * 10 9 7 13 13 S 1.65598 * 119.99897 * 145.00058 * 12 10 9 14 14 O 1.42104 * 104.27595 * 181.07073 * 13 12 10 15 15 O 1.42094 * 104.27765 * 308.92930 * 13 12 10 16 16 C 1.81399 * 104.44953 * 65.00202 * 13 12 10 17 17 C 1.53004 * 109.47270 * 179.97438 * 16 13 12 18 18 C 1.50693 * 109.47493 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99502 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00323 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47006 * 60.00342 * 22 20 18 24 24 H 1.48504 * 109.47143 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47208 * 300.00167 * 22 20 18 26 26 C 1.53180 * 109.03549 * 56.98149 * 10 9 7 27 27 C 1.53097 * 109.16185 * 303.01871 * 26 10 9 28 28 O 1.42898 * 109.48138 * 314.74967 * 7 6 5 29 29 H 1.08998 * 109.47117 * 270.02805 * 1 2 3 30 30 H 1.08998 * 109.46803 * 30.02036 * 1 2 3 31 31 H 1.08998 * 109.47357 * 150.02442 * 1 2 3 32 32 H 1.08001 * 126.58630 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.98413 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.52403 * 302.31069 * 9 7 6 35 35 H 1.08997 * 109.52585 * 62.50442 * 9 7 6 36 36 H 0.97002 * 119.99762 * 325.00025 * 12 10 9 37 37 H 1.08995 * 109.47293 * 299.99589 * 16 13 12 38 38 H 1.08994 * 109.47181 * 60.00187 * 16 13 12 39 39 H 1.09004 * 109.47300 * 300.00379 * 17 16 13 40 40 H 1.09008 * 109.46986 * 59.99606 * 17 16 13 41 41 H 0.96994 * 119.99944 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.52298 * 62.92519 * 26 10 9 43 43 H 1.09002 * 109.52402 * 183.05282 * 26 10 9 44 44 H 1.09005 * 109.47921 * 177.59130 * 27 26 10 45 45 H 1.09002 * 109.47830 * 297.61550 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 0.0006 5 7 3.5095 -0.6904 0.0015 6 6 2.2663 -1.0870 0.0009 7 6 1.8017 -2.5207 0.0072 8 1 0.7446 -2.5614 -0.2557 9 6 2.0039 -3.1167 1.4028 10 6 1.5859 -4.5902 1.3856 11 1 0.5232 -4.6651 1.1554 12 7 1.8466 -5.1889 2.6971 13 16 0.8238 -6.3446 3.2977 14 8 1.3671 -6.6657 4.5709 15 8 -0.4683 -5.7657 3.1774 16 6 1.0030 -7.7442 2.1578 17 6 0.0971 -8.8907 2.6115 18 6 0.2455 -10.0533 1.6642 19 1 0.9189 -9.9817 0.8229 20 6 -0.4777 -11.2086 1.8721 21 7 -1.2973 -11.2959 2.8969 22 14 -0.2942 -12.6494 0.6973 23 1 1.1185 -13.1066 0.6916 24 1 -1.1734 -13.7623 1.1378 25 1 -0.6826 -12.2245 -0.6716 26 6 2.3972 -5.3273 0.3156 27 6 2.1797 -4.6458 -1.0380 28 8 2.5590 -3.2712 -0.9442 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9614 2.1345 0.0004 33 1 4.4369 1.2610 0.0011 34 1 3.0544 -3.0393 1.6832 35 1 1.3927 -2.5731 2.1232 36 1 2.6182 -4.9084 3.2135 37 1 0.7194 -7.4327 1.1525 38 1 2.0399 -8.0802 2.1551 39 1 0.3810 -9.2022 3.6168 40 1 -0.9400 -8.5550 2.6145 41 1 -1.8058 -12.1089 3.0433 42 1 3.4556 -5.2945 0.5740 43 1 2.0679 -6.3648 0.2591 44 1 2.7881 -5.1399 -1.7956 45 1 1.1277 -4.7147 -1.3148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662453564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:16 Heat of formation + Delta-G solvation = -61.576330 kcal Electronic energy + Delta-G solvation = -28323.853063 eV Core-core repulsion = 24276.569947 eV Total energy + Delta-G solvation = -4047.283116 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.41724 -39.68969 -36.66802 -35.82095 -35.46407 -34.35096 -33.94642 -32.52730 -31.25897 -30.90054 -29.00745 -27.36786 -25.67353 -24.70879 -23.99992 -21.78961 -21.67580 -20.79480 -20.14591 -18.95747 -17.73269 -17.57242 -16.64421 -16.48854 -16.31276 -15.99394 -15.63791 -15.43265 -15.10377 -14.69319 -14.59119 -14.50227 -14.02450 -13.95057 -13.71863 -13.42900 -13.24813 -13.11802 -12.84833 -12.54580 -11.95356 -11.80573 -11.73662 -11.66227 -11.62659 -11.53649 -11.40710 -11.09259 -11.00518 -10.68621 -10.45548 -10.40063 -10.17730 -9.98705 -9.88149 -9.78728 -9.53473 -9.09896 -8.69519 -8.52871 -6.15216 -4.21061 0.73081 1.66443 2.31349 2.84250 3.06276 3.25056 3.30294 3.31739 3.53847 4.05449 4.18255 4.29023 4.34774 4.38103 4.49316 4.61303 4.64591 4.66094 4.69756 4.77591 4.83590 4.98980 5.06919 5.15481 5.19683 5.19996 5.38660 5.41869 5.49604 5.56931 5.63549 5.73439 5.78424 5.91130 5.96364 6.15220 6.44941 6.47032 6.74701 6.93663 7.03448 7.26188 7.32344 7.77312 7.86732 8.14027 8.82100 9.43859 10.95763 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.002541 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.776361 B =11015.812114 C =11666.081144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.455 5.455 3 C -0.055 4.055 4 C -0.030 4.030 5 N -0.462 5.462 6 C 0.209 3.791 7 C 0.184 3.816 8 H 0.074 0.926 9 C -0.144 4.144 10 C 0.150 3.850 11 H 0.095 0.905 12 N -1.120 6.120 13 S 2.590 3.410 14 O -0.966 6.966 15 O -0.968 6.968 16 C -0.590 4.590 17 C 0.029 3.971 18 C -0.521 4.521 19 H 0.061 0.939 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.186 4.186 27 C 0.063 3.937 28 O -0.360 6.360 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.414 0.586 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.106 0.894 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.081 23.615 -7.881 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.139 5.139 3 C -0.188 4.188 4 C -0.179 4.179 5 N -0.181 5.181 6 C -0.053 4.053 7 C 0.124 3.876 8 H 0.091 0.909 9 C -0.184 4.184 10 C 0.042 3.958 11 H 0.113 0.887 12 N -0.876 5.876 13 S 2.688 3.312 14 O -0.956 6.956 15 O -0.958 6.958 16 C -0.724 4.724 17 C -0.010 4.010 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.727 3.273 23 H -0.201 1.201 24 H -0.211 1.211 25 H -0.201 1.201 26 C -0.226 4.226 27 C -0.014 4.014 28 O -0.278 6.278 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.193 0.807 33 H 0.188 0.812 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.247 0.753 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.124 0.876 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.908 23.136 -7.193 24.721 hybrid contribution -0.222 -0.414 -0.774 0.905 sum 4.686 22.722 -7.967 24.530 Atomic orbital electron populations 1.22158 0.76440 1.05006 1.04145 1.45241 1.07683 1.06392 1.54536 1.22734 0.91381 0.92381 1.12295 1.22395 0.96483 0.91249 1.07768 1.70261 1.18227 1.11651 1.17928 1.22545 0.86023 0.89746 1.07020 1.19910 0.94267 0.83655 0.89784 0.90851 1.22429 1.04567 0.95011 0.96355 1.20758 1.00050 0.92394 0.82612 0.88674 1.55865 1.45137 1.57874 1.28682 1.05635 0.73761 0.75878 0.75959 1.93561 1.78984 1.84592 1.38484 1.93534 1.39341 1.75739 1.87168 1.30549 1.10710 1.16407 1.14705 1.18960 0.93327 0.90620 0.98136 1.20949 1.25653 0.98124 1.11300 0.92064 1.25069 0.94991 0.98814 0.95599 1.69943 1.26353 1.28169 1.28366 0.86530 0.78183 0.81584 0.80971 1.20060 1.21087 1.20080 1.22971 1.02933 1.01266 0.95384 1.22663 1.00789 0.80958 0.96991 1.88051 1.60049 1.21029 1.58622 0.89981 0.89246 0.89224 0.80662 0.81169 0.89088 0.90045 0.75263 0.86245 0.85892 0.94837 0.94859 0.92451 0.89550 0.89185 0.87634 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 10.93 59.85 0.65 0.96 16 2 N -0.45 -3.93 3.15 -121.28 -0.38 -4.31 16 3 C -0.06 -0.44 11.58 -16.56 -0.19 -0.64 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 N -0.46 -6.06 11.25 -10.82 -0.12 -6.18 16 6 C 0.21 2.36 6.79 -155.42 -1.06 1.30 16 7 C 0.18 1.89 3.02 -27.83 -0.08 1.80 16 8 H 0.07 0.59 6.74 -51.93 -0.35 0.24 16 9 C -0.14 -1.47 4.93 -26.59 -0.13 -1.60 16 10 C 0.15 1.64 2.78 -67.74 -0.19 1.46 16 11 H 0.10 1.04 7.48 -51.93 -0.39 0.65 16 12 N -1.12 -13.92 5.37 -4.73 -0.03 -13.95 16 13 S 2.59 44.55 5.44 -107.50 -0.58 43.96 16 14 O -0.97 -19.74 18.08 -57.54 -1.04 -20.78 16 15 O -0.97 -19.18 17.39 -57.54 -1.00 -20.18 16 16 C -0.59 -10.70 5.26 37.16 0.20 -10.50 16 17 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 18 C -0.52 -14.01 9.11 -34.44 -0.31 -14.32 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 22 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.19 -1.86 5.70 -26.59 -0.15 -2.01 16 27 C 0.06 0.59 6.84 37.21 0.25 0.84 16 28 O -0.36 -4.15 10.39 -35.23 -0.37 -4.52 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.36 6.92 -51.93 -0.36 0.00 16 32 H 0.18 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.41 4.43 8.80 -34.47 -0.30 4.13 16 37 H 0.12 1.87 6.77 -51.93 -0.35 1.52 16 38 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 41 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.09 0.90 5.91 -51.93 -0.31 0.59 16 44 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -37.98 380.68 -10.20 -48.18 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.67 Total: 2.72 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -1.46 Total: -21.15 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.21 Total: -49.81 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -2.41 Total: -45.48 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 44.55 SS G_CDS: -0.58 Total: 43.96 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.98 -10.20 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662453564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -37.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds