Wall clock time and date at job start Wed Apr 1 2020 01:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36883 * 126.40238 * 2 1 4 4 C 1.34666 * 106.81734 * 179.97438 * 3 2 1 5 5 N 1.34126 * 108.02240 * 359.97438 * 4 3 2 6 6 C 1.30494 * 109.25549 * 0.02562 * 5 4 3 7 7 C 1.50704 * 125.64842 * 180.26194 * 6 5 4 8 8 H 1.09004 * 109.48194 * 194.71339 * 7 6 5 9 9 C 1.53090 * 109.47742 * 74.69247 * 7 6 5 10 10 C 1.53179 * 109.16305 * 182.40767 * 9 7 6 11 11 H 1.08999 * 109.54694 * 297.02449 * 10 9 7 12 12 N 1.46501 * 109.54523 * 176.84591 * 10 9 7 13 13 S 1.65598 * 119.99897 * 145.00058 * 12 10 9 14 14 O 1.42104 * 104.27595 * 181.07073 * 13 12 10 15 15 O 1.42094 * 104.27765 * 308.92930 * 13 12 10 16 16 C 1.81399 * 104.44953 * 65.00202 * 13 12 10 17 17 C 1.53004 * 109.47270 * 179.97438 * 16 13 12 18 18 C 1.50693 * 109.47493 * 179.97438 * 17 16 13 19 19 H 1.08001 * 119.99502 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00323 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99856 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00026 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47006 * 60.00342 * 22 20 18 24 24 H 1.48504 * 109.47143 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47208 * 300.00167 * 22 20 18 26 26 C 1.53180 * 109.03549 * 56.98149 * 10 9 7 27 27 C 1.53097 * 109.16185 * 303.01871 * 26 10 9 28 28 O 1.42898 * 109.48138 * 314.74967 * 7 6 5 29 29 H 1.08998 * 109.47117 * 270.02805 * 1 2 3 30 30 H 1.08998 * 109.46803 * 30.02036 * 1 2 3 31 31 H 1.08998 * 109.47357 * 150.02442 * 1 2 3 32 32 H 1.08001 * 126.58630 * 0.02562 * 3 2 1 33 33 H 1.07999 * 125.98413 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.52403 * 302.31069 * 9 7 6 35 35 H 1.08997 * 109.52585 * 62.50442 * 9 7 6 36 36 H 0.97002 * 119.99762 * 325.00025 * 12 10 9 37 37 H 1.08995 * 109.47293 * 299.99589 * 16 13 12 38 38 H 1.08994 * 109.47181 * 60.00187 * 16 13 12 39 39 H 1.09004 * 109.47300 * 300.00379 * 17 16 13 40 40 H 1.09008 * 109.46986 * 59.99606 * 17 16 13 41 41 H 0.96994 * 119.99944 * 180.02562 * 21 20 18 42 42 H 1.09003 * 109.52298 * 62.92519 * 26 10 9 43 43 H 1.09002 * 109.52402 * 183.05282 * 26 10 9 44 44 H 1.09005 * 109.47921 * 177.59130 * 27 26 10 45 45 H 1.09002 * 109.47830 * 297.61550 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1017 0.0000 4 6 3.5461 0.6503 0.0006 5 7 3.5095 -0.6904 0.0015 6 6 2.2663 -1.0870 0.0009 7 6 1.8017 -2.5207 0.0072 8 1 0.7446 -2.5614 -0.2557 9 6 2.0039 -3.1167 1.4028 10 6 1.5859 -4.5902 1.3856 11 1 0.5232 -4.6651 1.1554 12 7 1.8466 -5.1889 2.6971 13 16 0.8238 -6.3446 3.2977 14 8 1.3671 -6.6657 4.5709 15 8 -0.4683 -5.7657 3.1774 16 6 1.0030 -7.7442 2.1578 17 6 0.0971 -8.8907 2.6115 18 6 0.2455 -10.0533 1.6642 19 1 0.9189 -9.9817 0.8229 20 6 -0.4777 -11.2086 1.8721 21 7 -1.2973 -11.2959 2.8969 22 14 -0.2942 -12.6494 0.6973 23 1 1.1185 -13.1066 0.6916 24 1 -1.1734 -13.7623 1.1378 25 1 -0.6826 -12.2245 -0.6716 26 6 2.3972 -5.3273 0.3156 27 6 2.1797 -4.6458 -1.0380 28 8 2.5590 -3.2712 -0.9442 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 1.9614 2.1345 0.0004 33 1 4.4369 1.2610 0.0011 34 1 3.0544 -3.0393 1.6832 35 1 1.3927 -2.5731 2.1232 36 1 2.6182 -4.9084 3.2135 37 1 0.7194 -7.4327 1.1525 38 1 2.0399 -8.0802 2.1551 39 1 0.3810 -9.2022 3.6168 40 1 -0.9400 -8.5550 2.6145 41 1 -1.8058 -12.1089 3.0433 42 1 3.4556 -5.2945 0.5740 43 1 2.0679 -6.3648 0.2591 44 1 2.7881 -5.1399 -1.7956 45 1 1.1277 -4.7147 -1.3148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662453564.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:15 Heat of formation + Delta-G solvation = -90.718527 kcal Electronic energy + Delta-G solvation = -28325.116764 eV Core-core repulsion = 24276.569947 eV Total energy + Delta-G solvation = -4048.546817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.08172 -40.48781 -38.17765 -37.05699 -36.72775 -35.88367 -34.94789 -33.31968 -33.06628 -31.88674 -29.71810 -27.85432 -27.58058 -25.51856 -24.81292 -23.52342 -22.46347 -21.58177 -20.92517 -20.23869 -19.12606 -18.44787 -18.22918 -17.39670 -17.25515 -17.00110 -16.71868 -16.52818 -16.50946 -16.00526 -15.66915 -15.30238 -15.01766 -14.86555 -14.71319 -14.45349 -14.33847 -13.79212 -13.73537 -13.60597 -13.42549 -13.23028 -13.16247 -13.08698 -12.88583 -12.79726 -12.65177 -12.37733 -12.27698 -12.19856 -12.09163 -11.77932 -11.46255 -11.13991 -10.91324 -10.70125 -10.61735 -10.53639 -10.41349 -9.37068 -8.24002 -6.37501 -0.69655 1.01081 1.42757 1.45643 1.53602 1.73190 1.80317 2.14710 2.39555 2.79434 2.87807 3.09780 3.22011 3.36146 3.60266 3.76452 3.79864 3.88636 3.98800 4.00968 4.05434 4.12475 4.14618 4.29382 4.40897 4.45407 4.58456 4.66076 4.69908 4.72962 4.74012 4.83703 4.84048 5.01813 5.09700 5.27600 5.30499 5.32748 5.35728 5.70715 5.83973 6.05436 6.08441 6.09334 6.26543 6.76348 7.17130 7.32638 8.88033 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018930 B = 0.002541 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.776361 B =11015.812114 C =11666.081144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.454 5.454 3 C -0.039 4.039 4 C -0.063 4.063 5 N -0.507 5.507 6 C 0.185 3.815 7 C 0.184 3.816 8 H 0.096 0.904 9 C -0.135 4.135 10 C 0.144 3.856 11 H 0.100 0.900 12 N -1.102 6.102 13 S 2.616 3.384 14 O -1.001 7.001 15 O -0.994 6.994 16 C -0.587 4.587 17 C 0.021 3.979 18 C -0.536 4.536 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.935 5.935 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.261 1.261 26 C -0.185 4.185 27 C 0.061 3.939 28 O -0.380 6.380 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.213 0.787 33 H 0.184 0.816 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.424 0.576 37 H 0.148 0.852 38 H 0.144 0.856 39 H 0.004 0.996 40 H 0.009 0.991 41 H 0.266 0.734 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.117 0.883 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 24.711 -9.896 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.137 5.137 3 C -0.173 4.173 4 C -0.211 4.211 5 N -0.227 5.227 6 C -0.077 4.077 7 C 0.124 3.876 8 H 0.113 0.887 9 C -0.175 4.175 10 C 0.036 3.964 11 H 0.118 0.882 12 N -0.861 5.861 13 S 2.713 3.287 14 O -0.991 6.991 15 O -0.984 6.984 16 C -0.720 4.720 17 C -0.018 4.018 18 C -0.575 4.575 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.575 5.575 22 Si 0.795 3.205 23 H -0.189 1.189 24 H -0.213 1.213 25 H -0.186 1.186 26 C -0.225 4.225 27 C -0.016 4.016 28 O -0.299 6.299 29 H 0.109 0.891 30 H 0.132 0.868 31 H 0.114 0.886 32 H 0.230 0.770 33 H 0.201 0.799 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.261 0.739 37 H 0.166 0.834 38 H 0.162 0.838 39 H 0.022 0.978 40 H 0.027 0.973 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.029 24.235 -9.214 26.411 hybrid contribution -0.242 -0.614 -0.147 0.676 sum 4.788 23.621 -9.362 25.855 Atomic orbital electron populations 1.22476 0.74175 1.06617 1.05249 1.45496 1.09085 1.05784 1.53296 1.23316 0.90630 0.93720 1.09650 1.22804 0.98265 0.90742 1.09317 1.70166 1.19856 1.13362 1.19272 1.22680 0.86210 0.90668 1.08173 1.20009 0.95209 0.83246 0.89162 0.88696 1.22331 1.03887 0.94387 0.96941 1.20997 1.00689 0.92956 0.81729 0.88209 1.55388 1.44797 1.56358 1.29596 1.04574 0.73359 0.75768 0.74955 1.93509 1.79547 1.85361 1.40693 1.93497 1.41309 1.76204 1.87366 1.30447 1.10449 1.14698 1.16365 1.18818 0.93438 0.92812 0.96737 1.21488 1.25419 0.98744 1.11829 0.90352 1.26100 0.94656 1.02166 0.97333 1.70096 1.27704 1.29083 1.30583 0.85397 0.78470 0.77620 0.78969 1.18948 1.21261 1.18569 1.22967 1.02713 1.01299 0.95474 1.22809 1.02046 0.80073 0.96694 1.88033 1.60858 1.21994 1.58969 0.89084 0.86823 0.88570 0.76990 0.79930 0.90185 0.89678 0.73940 0.83424 0.83757 0.97785 0.97312 0.92478 0.89581 0.88828 0.86523 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.37 10.93 127.77 1.40 1.77 16 2 N -0.45 -6.93 3.15 -537.62 -1.69 -8.62 16 3 C -0.04 -0.55 11.58 83.09 0.96 0.41 16 4 C -0.06 -1.25 11.87 83.52 0.99 -0.26 16 5 N -0.51 -13.22 11.25 -188.13 -2.12 -15.34 16 6 C 0.19 4.00 6.79 138.13 0.94 4.93 16 7 C 0.18 3.51 3.02 29.88 0.09 3.60 16 8 H 0.10 1.33 6.74 -2.39 -0.02 1.31 16 9 C -0.14 -2.61 4.93 30.68 0.15 -2.46 16 10 C 0.14 2.89 2.78 45.11 0.13 3.02 16 11 H 0.10 1.97 7.48 -2.39 -0.02 1.95 16 12 N -1.10 -25.93 5.37 -168.88 -0.91 -26.84 16 13 S 2.62 88.93 5.44 -56.49 -0.31 88.62 16 14 O -1.00 -41.22 18.08 -127.65 -2.31 -43.53 16 15 O -0.99 -39.14 17.39 -127.65 -2.22 -41.36 16 16 C -0.59 -20.70 5.26 71.98 0.38 -20.32 16 17 C 0.02 1.05 4.98 29.85 0.15 1.20 16 18 C -0.54 -28.66 9.11 25.60 0.23 -28.43 16 19 H 0.08 3.81 7.74 -2.91 -0.02 3.79 16 20 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 21 N -0.94 -56.06 13.29 21.45 0.28 -55.77 16 22 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.19 -3.32 5.70 30.69 0.17 -3.14 16 27 C 0.06 1.00 6.84 72.01 0.49 1.49 16 28 O -0.38 -8.28 10.39 -148.98 -1.55 -9.83 16 29 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.10 0.52 6.92 -2.39 -0.02 0.50 16 32 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.42 8.57 8.80 -96.74 -0.85 7.72 16 37 H 0.15 4.31 6.77 -2.39 -0.02 4.30 16 38 H 0.14 4.45 8.14 -2.39 -0.02 4.43 16 39 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.61 5.91 -2.39 -0.01 1.59 16 44 H 0.12 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -83.95 380.68 -2.09 -86.04 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.15 Total: 20.21 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 6.54 Total: -37.96 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -4.43 Total: -106.57 kcal Atomic # 8 Polarization: -88.64 SS G_CDS: -6.08 Total: -94.72 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Atomic # 16 Polarization: 88.93 SS G_CDS: -0.31 Total: 88.62 kcal Total: -83.95 -2.09 -86.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662453564.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.676 kcal (2) G-P(sol) polarization free energy of solvation -83.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds