Wall clock time and date at job start Wed Apr 1 2020 02:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35758 * 117.00126 * 2 1 4 4 N 1.32255 * 120.11256 * 359.97438 * 3 2 1 5 5 C 1.32418 * 120.01904 * 180.02562 * 4 3 2 6 6 C 1.37947 * 120.25496 * 359.97438 * 5 4 3 7 7 N 1.32398 * 120.23871 * 359.72272 * 6 5 4 8 8 C 1.32456 * 119.97005 * 0.55411 * 7 6 5 9 9 N 1.39179 * 120.12626 * 179.72222 * 8 7 6 10 10 N 1.40103 * 120.00107 * 359.72527 * 9 8 7 11 11 C 1.34780 * 120.00107 * 180.02562 * 10 9 8 12 12 O 1.21590 * 119.99757 * 179.97438 * 11 10 9 13 13 N 1.34769 * 119.99872 * 359.97438 * 11 10 9 14 14 C 1.39947 * 119.99980 * 184.38466 * 13 11 10 15 15 C 1.38865 * 120.07015 * 324.67544 * 14 13 11 16 16 C 1.38115 * 119.93310 * 179.76582 * 15 14 13 17 17 C 1.38289 * 120.06446 * 0.48293 * 16 15 14 18 18 C 1.50700 * 119.92861 * 179.76756 * 17 16 15 19 19 C 1.50698 * 109.46985 * 270.02420 * 18 17 16 20 20 H 1.07997 * 120.00316 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99877 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47332 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.47242 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47323 * 299.99778 * 23 21 19 27 27 C 1.38277 * 120.13960 * 359.79127 * 17 16 15 28 28 C 1.38115 * 120.07351 * 359.95602 * 27 17 16 29 29 H 1.08999 * 109.47197 * 60.00760 * 1 2 3 30 30 H 1.09001 * 109.46634 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47632 * 299.99963 * 1 2 3 32 32 H 1.08001 * 119.87511 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.88229 * 180.02562 * 6 5 4 34 34 H 0.97005 * 120.00592 * 179.72916 * 9 8 7 35 35 H 0.97000 * 120.00090 * 0.02562 * 10 9 8 36 36 H 0.97001 * 120.00315 * 4.67008 * 13 11 10 37 37 H 1.08003 * 120.03710 * 359.97438 * 15 14 13 38 38 H 1.07993 * 119.97354 * 180.24979 * 16 15 14 39 39 H 1.09005 * 109.47062 * 30.01923 * 18 17 16 40 40 H 1.08994 * 109.47120 * 150.02310 * 18 17 16 41 41 H 0.97000 * 120.00077 * 180.02562 * 22 21 19 42 42 H 1.08005 * 119.96380 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.03463 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3272 2.3202 -0.0005 5 6 1.9303 3.4991 -0.0010 6 6 3.3077 3.5751 -0.0005 7 7 4.0365 2.4698 0.0061 8 6 3.4428 1.2857 0.0011 9 7 4.2058 0.1217 0.0021 10 7 5.6046 0.2010 0.0026 11 6 6.3435 -0.9262 0.0031 12 8 7.5575 -0.8574 0.0031 13 7 5.7368 -2.1296 0.0036 14 6 6.5008 -3.2984 0.0967 15 6 7.7469 -3.3656 -0.5125 16 6 8.5006 -4.5188 -0.4147 17 6 8.0112 -5.6094 0.2807 18 6 8.8339 -6.8680 0.3810 19 6 8.5062 -7.7759 -0.7762 20 1 7.7750 -7.4722 -1.5107 21 6 9.1392 -8.9949 -0.8968 22 7 10.0292 -9.3650 -0.0022 23 14 8.7336 -10.1200 -2.3317 24 1 9.0443 -9.4267 -3.6077 25 1 9.5442 -11.3603 -2.2327 26 1 7.2902 -10.4673 -2.2958 27 6 6.7683 -5.5476 0.8836 28 6 6.0120 -4.3955 0.7938 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.3417 4.4045 -0.0019 33 1 3.7934 4.5398 -0.0005 34 1 3.7692 -0.7445 0.0024 35 1 6.0413 1.0671 0.0026 36 1 4.7708 -2.1858 -0.0648 37 1 8.1277 -2.5157 -1.0594 38 1 9.4714 -4.5703 -0.8848 39 1 9.8933 -6.6127 0.3538 40 1 8.6067 -7.3768 1.3177 41 1 10.4748 -10.2224 -0.0872 42 1 6.3887 -6.4012 1.4256 43 1 5.0416 -4.3478 1.2653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001680525434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:02 Heat of formation + Delta-G solvation = 62.982631 kcal Electronic energy + Delta-G solvation = -27947.620787 eV Core-core repulsion = 23802.587752 eV Total energy + Delta-G solvation = -4145.033035 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.83320 -40.68624 -38.83678 -38.46811 -37.04374 -34.98330 -34.22484 -33.00766 -32.36462 -30.38833 -30.26801 -29.18973 -28.04321 -26.61205 -24.39290 -24.15736 -23.47448 -22.39319 -21.57711 -20.15945 -19.64127 -19.03826 -18.85329 -18.07245 -17.01392 -16.83579 -16.29183 -15.98082 -15.80694 -15.54674 -15.18876 -15.01381 -14.81269 -14.80039 -14.24238 -14.02815 -13.88955 -13.07807 -12.95153 -12.80090 -12.55688 -12.51694 -12.07922 -12.00430 -11.96700 -11.45018 -11.27949 -11.16245 -10.89523 -10.66288 -10.47487 -10.31248 -9.95028 -9.85519 -9.65712 -9.45871 -9.30391 -8.40603 -8.28746 -7.90058 -7.39715 -6.02060 -4.06128 0.45272 0.64846 1.40004 1.92535 2.07355 2.36215 2.64280 2.94639 3.22936 3.32993 3.37183 3.40284 3.57238 3.70498 3.96247 4.38439 4.55608 4.64019 4.66269 4.84010 4.86487 4.89021 5.14428 5.31676 5.40361 5.52136 5.59573 5.73435 5.87541 5.98107 6.07998 6.19926 6.43848 6.49798 6.64668 6.69299 6.87096 6.93907 7.03473 7.17182 7.22321 7.28062 7.52871 7.70723 7.80711 7.88000 7.93530 8.26773 8.34052 8.98900 9.57371 11.07488 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.001893 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.849910 B =14785.206798 C =15627.826000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.310 6.310 3 C 0.233 3.767 4 N -0.456 5.456 5 C 0.019 3.981 6 C 0.069 3.931 7 N -0.477 5.477 8 C 0.363 3.637 9 N -0.510 5.510 10 N -0.524 5.524 11 C 0.711 3.289 12 O -0.552 6.552 13 N -0.677 5.677 14 C 0.115 3.885 15 C -0.114 4.114 16 C -0.108 4.108 17 C -0.040 4.040 18 C 0.047 3.953 19 C -0.511 4.511 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.896 3.104 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.108 4.108 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.172 0.828 33 H 0.176 0.824 34 H 0.437 0.563 35 H 0.443 0.557 36 H 0.396 0.604 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.599 25.832 1.013 33.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.216 6.216 3 C 0.041 3.959 4 N -0.185 5.185 5 C -0.138 4.138 6 C -0.088 4.088 7 N -0.202 5.202 8 C 0.119 3.881 9 N -0.246 5.246 10 N -0.280 5.280 11 C 0.411 3.589 12 O -0.424 6.424 13 N -0.327 5.327 14 C 0.022 3.978 15 C -0.135 4.135 16 C -0.127 4.127 17 C -0.041 4.041 18 C 0.011 3.989 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.144 4.144 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.127 4.127 28 C -0.162 4.162 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.189 0.811 33 H 0.193 0.807 34 H 0.283 0.717 35 H 0.290 0.710 36 H 0.231 0.769 37 H 0.148 0.852 38 H 0.140 0.860 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.327 25.365 1.083 31.907 hybrid contribution -1.103 -0.430 -0.804 1.431 sum -20.430 24.934 0.279 32.236 Atomic orbital electron populations 1.22925 0.76271 1.03556 1.02575 1.86174 1.23684 1.23276 1.88453 1.19912 0.87714 0.86739 1.01567 1.67994 1.38666 0.98207 1.13648 1.23118 0.93603 0.94946 1.02128 1.23293 0.92014 0.96652 0.96841 1.67897 1.38383 0.96545 1.17341 1.18169 0.84911 0.87539 0.97438 1.43072 0.94232 1.05861 1.81407 1.44578 0.92712 1.09547 1.81203 1.15691 0.84919 0.79773 0.78556 1.91063 1.10076 1.83784 1.57466 1.42426 1.09519 1.03769 1.76938 1.17277 0.93751 0.85137 1.01600 1.21143 0.94047 0.98589 0.99674 1.21025 1.00098 0.92132 0.99430 1.20740 0.94531 0.96330 0.92509 1.18356 0.94424 0.88291 0.97871 1.21025 1.23340 1.01456 1.09146 0.92505 1.25017 0.95066 0.97930 0.96366 1.69947 1.26571 1.21809 1.34954 0.86597 0.78372 0.79903 0.82797 1.20182 1.21268 1.20205 1.20871 0.94499 0.96672 1.00648 1.20718 1.00690 0.93798 1.00956 0.92097 0.88054 0.92091 0.81051 0.80716 0.71748 0.71048 0.76874 0.85238 0.85979 0.95239 0.95287 0.92804 0.85918 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.40 101.05 1.05 1.26 16 2 O -0.31 -2.31 9.75 -18.98 -0.18 -2.50 16 3 C 0.23 1.97 7.52 -16.73 -0.13 1.85 16 4 N -0.46 -3.57 9.39 -12.97 -0.12 -3.69 16 5 C 0.02 0.11 11.20 -17.41 -0.19 -0.09 16 6 C 0.07 0.40 11.20 -17.41 -0.20 0.20 16 7 N -0.48 -4.08 9.54 -12.10 -0.12 -4.19 16 8 C 0.36 3.23 7.63 -154.49 -1.18 2.06 16 9 N -0.51 -4.45 6.42 31.34 0.20 -4.25 16 10 N -0.52 -5.58 6.30 27.63 0.17 -5.40 16 11 C 0.71 9.77 8.52 -86.92 -0.74 9.03 16 12 O -0.55 -9.71 14.64 5.29 0.08 -9.64 16 13 N -0.68 -8.63 5.30 -14.22 -0.08 -8.71 16 14 C 0.11 1.88 6.29 -83.69 -0.53 1.35 16 15 C -0.11 -2.13 8.69 -39.39 -0.34 -2.47 16 16 C -0.11 -2.21 9.69 -39.61 -0.38 -2.60 16 17 C -0.04 -0.89 5.07 -104.59 -0.53 -1.42 16 18 C 0.05 1.22 5.10 -29.04 -0.15 1.08 16 19 C -0.51 -14.30 9.09 -34.44 -0.31 -14.61 16 20 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 27 C -0.11 -2.07 9.69 -39.61 -0.38 -2.45 16 28 C -0.14 -2.27 9.97 -39.39 -0.39 -2.66 16 29 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.30 8.11 -51.93 -0.42 -0.12 16 32 H 0.17 0.39 8.06 -52.49 -0.42 -0.04 16 33 H 0.18 0.43 8.06 -52.48 -0.42 0.00 16 34 H 0.44 3.16 6.08 -182.59 -1.11 2.05 16 35 H 0.44 4.61 8.08 -182.59 -1.48 3.13 16 36 H 0.40 3.67 6.76 -40.82 -0.28 3.40 16 37 H 0.13 2.41 6.25 -52.48 -0.33 2.08 16 38 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 39 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 40 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.12 2.24 8.06 -52.48 -0.42 1.81 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -34.38 375.04 -10.13 -44.51 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.95 Total: 5.33 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -4.50 Total: -7.93 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.80 Total: -51.95 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.11 Total: -12.14 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.38 -10.13 -44.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680525434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.495 kcal (2) G-P(sol) polarization free energy of solvation -34.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds