Wall clock time and date at job start Wed Apr 1 2020 02:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35758 * 117.00126 * 2 1 4 4 N 1.32255 * 120.11256 * 359.97438 * 3 2 1 5 5 C 1.32418 * 120.01904 * 180.02562 * 4 3 2 6 6 C 1.37947 * 120.25496 * 359.97438 * 5 4 3 7 7 N 1.32398 * 120.23871 * 359.72272 * 6 5 4 8 8 C 1.32456 * 119.97005 * 0.55411 * 7 6 5 9 9 N 1.39179 * 120.12626 * 179.72222 * 8 7 6 10 10 N 1.40103 * 120.00107 * 359.72527 * 9 8 7 11 11 C 1.34780 * 120.00107 * 180.02562 * 10 9 8 12 12 O 1.21590 * 119.99757 * 179.97438 * 11 10 9 13 13 N 1.34769 * 119.99872 * 359.97438 * 11 10 9 14 14 C 1.39947 * 119.99980 * 184.38466 * 13 11 10 15 15 C 1.38865 * 120.07015 * 324.67544 * 14 13 11 16 16 C 1.38115 * 119.93310 * 179.76582 * 15 14 13 17 17 C 1.38289 * 120.06446 * 0.48293 * 16 15 14 18 18 C 1.50700 * 119.92861 * 179.76756 * 17 16 15 19 19 C 1.50698 * 109.46985 * 270.02420 * 18 17 16 20 20 H 1.07997 * 120.00316 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99877 * 180.02562 * 19 18 17 22 22 N 1.31511 * 119.99929 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00022 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47332 * 59.99790 * 23 21 19 25 25 H 1.48503 * 109.47242 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47323 * 299.99778 * 23 21 19 27 27 C 1.38277 * 120.13960 * 359.79127 * 17 16 15 28 28 C 1.38115 * 120.07351 * 359.95602 * 27 17 16 29 29 H 1.08999 * 109.47197 * 60.00760 * 1 2 3 30 30 H 1.09001 * 109.46634 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47632 * 299.99963 * 1 2 3 32 32 H 1.08001 * 119.87511 * 179.97438 * 5 4 3 33 33 H 1.08003 * 119.88229 * 180.02562 * 6 5 4 34 34 H 0.97005 * 120.00592 * 179.72916 * 9 8 7 35 35 H 0.97000 * 120.00090 * 0.02562 * 10 9 8 36 36 H 0.97001 * 120.00315 * 4.67008 * 13 11 10 37 37 H 1.08003 * 120.03710 * 359.97438 * 15 14 13 38 38 H 1.07993 * 119.97354 * 180.24979 * 16 15 14 39 39 H 1.09005 * 109.47062 * 30.01923 * 18 17 16 40 40 H 1.08994 * 109.47120 * 150.02310 * 18 17 16 41 41 H 0.97000 * 120.00077 * 180.02562 * 22 21 19 42 42 H 1.08005 * 119.96380 * 179.97438 * 27 17 16 43 43 H 1.07997 * 120.03463 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 7 1.3272 2.3202 -0.0005 5 6 1.9303 3.4991 -0.0010 6 6 3.3077 3.5751 -0.0005 7 7 4.0365 2.4698 0.0061 8 6 3.4428 1.2857 0.0011 9 7 4.2058 0.1217 0.0021 10 7 5.6046 0.2010 0.0026 11 6 6.3435 -0.9262 0.0031 12 8 7.5575 -0.8574 0.0031 13 7 5.7368 -2.1296 0.0036 14 6 6.5008 -3.2984 0.0967 15 6 7.7469 -3.3656 -0.5125 16 6 8.5006 -4.5188 -0.4147 17 6 8.0112 -5.6094 0.2807 18 6 8.8339 -6.8680 0.3810 19 6 8.5062 -7.7759 -0.7762 20 1 7.7750 -7.4722 -1.5107 21 6 9.1392 -8.9949 -0.8968 22 7 10.0292 -9.3650 -0.0022 23 14 8.7336 -10.1200 -2.3317 24 1 9.0443 -9.4267 -3.6077 25 1 9.5442 -11.3603 -2.2327 26 1 7.2902 -10.4673 -2.2958 27 6 6.7683 -5.5476 0.8836 28 6 6.0120 -4.3955 0.7938 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.3417 4.4045 -0.0019 33 1 3.7934 4.5398 -0.0005 34 1 3.7692 -0.7445 0.0024 35 1 6.0413 1.0671 0.0026 36 1 4.7708 -2.1858 -0.0648 37 1 8.1277 -2.5157 -1.0594 38 1 9.4714 -4.5703 -0.8848 39 1 9.8933 -6.6127 0.3538 40 1 8.6067 -7.3768 1.3177 41 1 10.4748 -10.2224 -0.0872 42 1 6.3887 -6.4012 1.4256 43 1 5.0416 -4.3478 1.2653 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001680525434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:01 Heat of formation + Delta-G solvation = 38.122673 kcal Electronic energy + Delta-G solvation = -27948.698796 eV Core-core repulsion = 23802.587752 eV Total energy + Delta-G solvation = -4146.111043 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.40590 -41.78244 -39.85582 -39.30618 -37.90007 -36.37461 -35.07178 -34.72210 -33.13856 -32.01390 -31.76027 -29.85084 -28.51752 -28.32013 -25.38233 -24.82227 -24.71828 -23.85535 -22.88482 -21.56493 -20.56386 -19.79631 -19.36020 -18.80258 -18.48289 -18.07410 -17.37679 -16.95263 -16.88882 -16.67437 -16.27277 -15.92519 -15.82297 -15.61091 -15.47196 -15.23918 -14.62132 -14.49684 -14.32576 -14.26795 -13.76847 -13.52991 -13.26042 -13.15450 -12.94713 -12.60503 -12.53413 -12.48053 -12.45767 -12.12987 -11.82230 -11.79762 -11.58098 -11.36891 -11.00183 -10.57983 -10.39229 -10.34069 -9.75753 -8.95881 -8.48280 -8.16373 -6.30891 -0.05396 0.10458 0.43944 0.57233 0.68376 1.41077 1.44071 1.52145 1.66007 1.83333 1.88801 2.41592 2.70971 2.94356 3.00246 3.12862 3.24609 3.43941 3.99572 4.12867 4.16525 4.22146 4.39810 4.45071 4.47548 4.51174 4.59110 4.63091 4.68622 4.81260 4.98456 5.14439 5.19152 5.28592 5.33636 5.41694 5.44831 5.60377 5.76178 5.78082 5.90113 6.08826 6.10762 6.13200 6.25835 6.37405 6.66001 6.81615 6.96121 7.22894 7.37272 8.91396 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020738 B = 0.001893 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.849910 B =14785.206798 C =15627.826000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.318 6.318 3 C 0.222 3.778 4 N -0.470 5.470 5 C 0.029 3.971 6 C 0.067 3.933 7 N -0.494 5.494 8 C 0.341 3.659 9 N -0.510 5.510 10 N -0.510 5.510 11 C 0.711 3.289 12 O -0.595 6.595 13 N -0.664 5.664 14 C 0.132 3.868 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.073 4.073 18 C 0.056 3.944 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.282 1.282 26 H -0.265 1.265 27 C -0.112 4.112 28 C -0.124 4.124 29 H 0.059 0.941 30 H 0.122 0.878 31 H 0.059 0.941 32 H 0.207 0.793 33 H 0.209 0.791 34 H 0.443 0.557 35 H 0.445 0.555 36 H 0.417 0.583 37 H 0.128 0.872 38 H 0.111 0.889 39 H -0.001 1.001 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.129 0.871 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.889 27.719 0.492 36.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.224 6.224 3 C 0.032 3.968 4 N -0.199 5.199 5 C -0.129 4.129 6 C -0.090 4.090 7 N -0.219 5.219 8 C 0.100 3.900 9 N -0.248 5.248 10 N -0.264 5.264 11 C 0.411 3.589 12 O -0.470 6.470 13 N -0.315 5.315 14 C 0.038 3.962 15 C -0.141 4.141 16 C -0.139 4.139 17 C -0.073 4.073 18 C 0.019 3.981 19 C -0.565 4.565 20 H 0.075 0.925 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.790 3.210 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.189 1.189 27 C -0.130 4.130 28 C -0.144 4.144 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.078 0.922 32 H 0.224 0.776 33 H 0.226 0.774 34 H 0.289 0.711 35 H 0.292 0.708 36 H 0.255 0.745 37 H 0.146 0.854 38 H 0.129 0.871 39 H 0.018 0.982 40 H 0.026 0.974 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -22.698 27.283 0.560 35.494 hybrid contribution -0.226 -0.722 -0.604 0.968 sum -22.924 26.561 -0.044 35.086 Atomic orbital electron populations 1.23093 0.75203 1.04922 1.02419 1.86156 1.24752 1.23036 1.88425 1.19968 0.87632 0.87263 1.01977 1.68081 1.39019 0.98765 1.14051 1.23785 0.94047 0.95400 0.99644 1.23918 0.92369 0.97132 0.95603 1.67913 1.39428 0.97186 1.17352 1.18250 0.85189 0.87650 0.98882 1.43005 0.92768 1.06427 1.82585 1.44246 0.93935 1.08578 1.79632 1.15694 0.84499 0.80354 0.78402 1.91043 1.12084 1.84565 1.59277 1.42171 1.10292 1.02463 1.76528 1.17313 0.92972 0.86252 0.99703 1.21139 0.95090 0.97615 1.00279 1.20933 1.00204 0.92775 0.99965 1.20432 0.95946 0.95204 0.95741 1.18099 0.93472 0.90102 0.96392 1.21359 1.23288 1.02147 1.09697 0.92542 1.25949 0.94791 0.99610 0.99214 1.70080 1.27636 1.22408 1.36923 0.85486 0.78662 0.77680 0.79142 1.19529 1.20701 1.18941 1.20968 0.93635 0.98179 1.00263 1.21008 1.01819 0.91963 0.99575 0.92254 0.85987 0.92202 0.77594 0.77444 0.71065 0.70788 0.74458 0.85397 0.87120 0.98241 0.97389 0.92630 0.85343 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.40 113.37 1.18 1.50 16 2 O -0.32 -4.19 9.75 -90.84 -0.89 -5.08 16 3 C 0.22 3.38 7.52 85.05 0.64 4.02 16 4 N -0.47 -6.30 9.39 -307.77 -2.89 -9.19 16 5 C 0.03 0.23 11.20 84.54 0.95 1.18 16 6 C 0.07 0.58 11.20 84.54 0.95 1.53 16 7 N -0.49 -7.49 9.54 -192.20 -1.83 -9.32 16 8 C 0.34 5.53 7.63 133.19 1.02 6.54 16 9 N -0.51 -8.03 6.42 -54.76 -0.35 -8.38 16 10 N -0.51 -10.17 6.30 -184.74 -1.16 -11.33 16 11 C 0.71 18.66 8.52 179.06 1.53 20.19 16 12 O -0.59 -20.80 14.64 -4.00 -0.06 -20.85 16 13 N -0.66 -15.44 5.30 -317.18 -1.68 -17.11 16 14 C 0.13 4.08 6.29 38.15 0.24 4.32 16 15 C -0.12 -4.51 8.69 22.39 0.19 -4.32 16 16 C -0.12 -5.11 9.69 22.25 0.22 -4.90 16 17 C -0.07 -3.29 5.07 -19.84 -0.10 -3.39 16 18 C 0.06 3.08 5.10 29.10 0.15 3.22 16 19 C -0.53 -30.39 9.09 25.60 0.23 -30.15 16 20 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 21 C 0.00 0.14 5.46 84.66 0.46 0.60 16 22 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 23 Si 0.97 44.59 29.54 68.60 2.03 46.62 16 24 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 C -0.11 -4.21 9.69 22.25 0.22 -3.99 16 28 C -0.12 -3.65 9.97 22.39 0.22 -3.43 16 29 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 30 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.11 -2.39 -0.02 0.48 16 32 H 0.21 0.06 8.06 -2.91 -0.02 0.04 16 33 H 0.21 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.44 5.48 6.08 -213.31 -1.30 4.18 16 35 H 0.45 8.81 8.08 -213.32 -1.72 7.09 16 36 H 0.42 6.42 6.76 -92.71 -0.63 5.79 16 37 H 0.13 4.83 6.25 -2.91 -0.02 4.81 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 39 H 0.00 -0.04 8.08 -2.38 -0.02 -0.06 16 40 H 0.01 0.45 8.08 -2.39 -0.02 0.43 16 41 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 42 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 43 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -77.40 375.04 -1.02 -78.42 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -2.55 Total: 19.75 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 8.09 Total: -7.08 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -7.63 Total: -111.78 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.94 Total: -25.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -77.40 -1.02 -78.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001680525434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.545 kcal (2) G-P(sol) polarization free energy of solvation -77.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds