Wall clock time and date at job start Wed Apr 1 2020 01:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00003 * 2 1 4 4 C 1.41931 * 126.87979 * 180.30383 * 3 2 1 5 5 C 1.35269 * 103.96134 * 180.11519 * 4 3 2 6 6 C 1.50704 * 126.71253 * 179.87955 * 5 4 3 7 7 N 1.46893 * 109.47295 * 89.70636 * 6 5 4 8 8 C 1.46901 * 111.00360 * 293.95434 * 7 6 5 9 9 C 1.46906 * 110.99932 * 170.00151 * 7 6 5 10 10 C 1.53002 * 109.47053 * 189.99865 * 9 7 6 11 11 N 1.46496 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.46505 * 119.99970 * 270.00680 * 11 10 9 13 13 C 1.34771 * 120.00241 * 89.99776 * 11 10 9 14 14 O 1.21285 * 119.99914 * 0.02562 * 13 11 10 15 15 C 1.50706 * 120.00395 * 180.02562 * 13 11 10 16 16 S 1.81001 * 109.47179 * 180.02562 * 15 13 11 17 17 C 1.76197 * 99.99854 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99960 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99764 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00338 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47389 * 119.99880 * 21 19 17 24 24 H 1.48500 * 109.47462 * 239.99793 * 21 19 17 25 25 O 1.34081 * 106.58037 * 359.61182 * 5 4 3 26 26 N 1.20912 * 111.71921 * 0.26603 * 25 5 4 27 27 H 1.09006 * 109.46707 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47048 * 300.00137 * 1 2 3 30 30 H 1.08002 * 128.02425 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.46439 * 329.70623 * 6 5 4 32 32 H 1.08994 * 109.47235 * 209.71424 * 6 5 4 33 33 H 1.08995 * 109.47046 * 296.04847 * 8 7 6 34 34 H 1.09008 * 109.46903 * 56.04730 * 8 7 6 35 35 H 1.08999 * 109.47457 * 176.04446 * 8 7 6 36 36 H 1.08992 * 109.47459 * 309.99948 * 9 7 6 37 37 H 1.09004 * 109.47040 * 70.00098 * 9 7 6 38 38 H 1.09001 * 109.47142 * 300.00160 * 10 9 7 39 39 H 1.09004 * 109.47006 * 60.00213 * 10 9 7 40 40 H 1.08998 * 109.47131 * 89.99861 * 12 11 10 41 41 H 1.08998 * 109.46503 * 209.99644 * 12 11 10 42 42 H 1.08996 * 109.46669 * 329.99368 * 12 11 10 43 43 H 1.08998 * 109.46786 * 300.00563 * 15 13 11 44 44 H 1.08999 * 109.46534 * 60.00763 * 15 13 11 45 45 H 0.97002 * 119.99605 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4527 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8088 3.6146 -0.0009 7 7 5.2209 3.8785 -1.3859 8 6 5.6023 2.6346 -2.0679 9 6 6.3127 4.8603 -1.4323 10 6 6.5459 5.2957 -2.8804 11 7 7.6350 6.2744 -2.9268 12 6 7.3409 7.7042 -2.8021 13 6 8.9076 5.8594 -3.0840 14 8 9.1511 4.6758 -3.1876 15 6 10.0281 6.8661 -3.1311 16 16 11.6047 6.0042 -3.3498 17 6 12.7053 7.3800 -3.3694 18 1 12.3183 8.3827 -3.2629 19 6 14.0695 7.1753 -3.5228 20 7 14.5411 5.9532 -3.6531 21 14 15.2363 8.6339 -3.5443 22 1 14.4613 9.8901 -3.3813 23 1 16.2107 8.5049 -2.4311 24 1 15.9644 8.6664 -4.8381 25 8 2.2851 3.2751 -0.0009 26 7 1.4701 2.3819 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2447 0.7287 -0.0119 31 1 5.5948 3.0609 0.5128 32 1 4.6351 4.5599 0.5130 33 1 6.4781 2.2066 -1.5802 34 1 4.7761 1.9252 -2.0187 35 1 5.8356 2.8488 -3.1109 36 1 6.0462 5.7289 -0.8302 37 1 7.2234 4.4099 -1.0372 38 1 6.8125 4.4271 -3.4826 39 1 5.6352 5.7461 -3.2755 40 1 7.3721 7.9912 -1.7510 41 1 8.0832 8.2775 -3.3574 42 1 6.3488 7.9074 -3.2050 43 1 9.8686 7.5485 -3.9660 44 1 10.0486 7.4307 -2.1990 45 1 15.4945 5.8102 -3.7606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698985653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:10 Heat of formation + Delta-G solvation = 12.234302 kcal Electronic energy + Delta-G solvation = -26685.271658 eV Core-core repulsion = 22641.189211 eV Total energy + Delta-G solvation = -4044.082447 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.21107 -39.64014 -39.18843 -38.03858 -35.37530 -33.60789 -32.51707 -32.44610 -30.55414 -28.49157 -28.12190 -27.76439 -26.57724 -25.53190 -24.43006 -23.71492 -21.81820 -21.25277 -19.21840 -18.18477 -18.06951 -17.69203 -17.09330 -16.77407 -16.28617 -15.94755 -15.80655 -15.56203 -15.34162 -15.00744 -14.81994 -14.61396 -14.00508 -13.85645 -13.72300 -13.27315 -13.06980 -12.85046 -12.68046 -12.56905 -12.44434 -12.26934 -12.17754 -12.13525 -11.93886 -11.74374 -11.42872 -11.08797 -11.03640 -10.98171 -10.76048 -9.97781 -9.81376 -9.58757 -9.41203 -9.09149 -8.83643 -8.54600 -8.24521 -6.52316 -6.23696 -3.94329 1.03193 1.91520 2.39010 2.70497 2.90022 3.01364 3.20156 3.24069 3.29517 3.51814 3.79576 3.88004 4.18465 4.43165 4.56293 4.63884 4.69070 4.72147 4.75354 4.84663 4.99389 5.06358 5.08843 5.11247 5.12256 5.19497 5.25813 5.35384 5.41703 5.43724 5.46229 5.54031 5.67518 5.73307 5.77595 5.86786 5.93086 6.11432 6.44928 6.55669 6.59941 6.74006 7.48952 7.58197 7.90977 8.33537 8.51566 9.21920 10.83781 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.501978 B =16981.793046 C =17431.311350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.285 6.285 3 C 0.207 3.793 4 C -0.230 4.230 5 C 0.013 3.987 6 C 0.130 3.870 7 N -0.536 5.536 8 C 0.012 3.988 9 C 0.041 3.959 10 C 0.122 3.878 11 N -0.624 5.624 12 C 0.080 3.920 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.150 4.150 16 S -0.063 6.063 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 O 0.108 5.892 26 N -0.410 5.410 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.177 0.823 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.343 -4.673 7.742 27.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.191 6.191 3 C 0.010 3.990 4 C -0.253 4.253 5 C -0.051 4.051 6 C 0.001 3.999 7 N -0.261 5.261 8 C -0.136 4.136 9 C -0.088 4.088 10 C -0.002 4.002 11 N -0.361 5.361 12 C -0.063 4.063 13 C 0.321 3.679 14 O -0.389 6.389 15 C -0.301 4.301 16 S 0.164 5.836 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 O 0.048 5.952 26 N -0.136 5.136 27 H 0.078 0.922 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.195 0.805 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.055 0.945 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.387 -6.217 7.305 29.018 hybrid contribution 1.499 1.527 0.556 2.211 sum -25.887 -4.691 7.862 27.458 Atomic orbital electron populations 1.23064 0.76829 1.04082 1.02344 1.86194 1.22590 1.20961 1.89395 1.21990 0.90885 0.85711 1.00433 1.21827 0.94362 0.95734 1.13372 1.24107 0.88190 0.92802 1.00026 1.20536 0.88458 0.99594 0.91298 1.61888 1.38685 1.11896 1.13620 1.22611 0.99916 0.90894 1.00186 1.22540 0.92153 0.95199 0.98882 1.21323 0.89595 0.93585 0.95702 1.47843 1.06408 1.07174 1.74663 1.21797 1.02090 0.80718 1.01697 1.20380 0.82728 0.89754 0.75073 1.90691 1.82811 1.17685 1.47756 1.23562 1.00085 1.01634 1.04810 1.85390 0.91886 1.11171 1.95181 1.22898 0.93728 0.93724 1.57909 0.90876 1.24993 0.97376 0.96681 0.94530 1.70033 1.14148 1.19877 1.46224 0.86118 0.80114 0.81353 0.77918 1.19599 1.20572 1.20567 1.84810 1.12154 1.29833 1.68441 1.74143 1.15744 0.96717 1.26977 0.92222 0.87661 0.92291 0.80536 0.90536 0.87807 0.94481 0.91200 0.90304 0.90251 0.93328 0.89700 0.89911 0.92765 0.90616 0.91202 0.89202 0.89247 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.73 101.05 1.08 1.29 16 2 O -0.29 -2.79 10.57 -18.83 -0.20 -2.99 16 3 C 0.21 2.19 8.01 -16.66 -0.13 2.05 16 4 C -0.23 -2.04 9.64 -39.23 -0.38 -2.42 16 5 C 0.01 0.12 6.36 -35.36 -0.23 -0.11 16 6 C 0.13 0.94 5.53 -4.98 -0.03 0.91 16 7 N -0.54 -4.79 4.75 -244.37 -1.16 -5.95 16 8 C 0.01 0.11 9.10 60.07 0.55 0.66 16 9 C 0.04 0.40 5.28 -3.82 -0.02 0.38 16 10 C 0.12 1.36 5.38 -4.04 -0.02 1.34 16 11 N -0.62 -8.20 2.87 -181.57 -0.52 -8.72 16 12 C 0.08 0.76 10.29 59.85 0.62 1.38 16 13 C 0.53 9.67 7.69 -10.99 -0.08 9.59 16 14 O -0.52 -11.24 15.44 5.55 0.09 -11.16 16 15 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.00 9.50 30.94 0.29 -14.70 16 18 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.89 13.22 55.49 0.73 -25.15 16 21 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 O 0.11 1.14 11.19 17.07 0.19 1.33 16 26 N -0.41 -4.62 11.54 30.38 0.35 -4.27 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.18 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.10 0.61 7.93 -51.93 -0.41 0.20 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.60 6.11 -51.92 -0.32 0.29 16 35 H 0.08 0.78 6.47 -51.93 -0.34 0.44 16 36 H 0.08 0.67 7.93 -51.93 -0.41 0.26 16 37 H 0.05 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.08 1.11 5.83 -51.93 -0.30 0.81 16 39 H 0.08 0.77 7.89 -51.93 -0.41 0.36 16 40 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.75 6.44 -51.93 -0.33 0.41 16 42 H 0.07 0.50 7.89 -51.93 -0.41 0.09 16 43 H 0.09 1.64 7.40 -51.92 -0.38 1.26 16 44 H 0.09 1.63 8.11 -51.92 -0.42 1.21 16 45 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -35.15 391.87 -6.79 -41.94 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.66 Total: -2.71 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 1.72 Total: -0.44 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.60 Total: -44.10 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.15 -6.79 -41.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.177 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds