Wall clock time and date at job start Wed Apr 1 2020 01:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35707 * 117.00003 * 2 1 4 4 C 1.41931 * 126.87979 * 180.30383 * 3 2 1 5 5 C 1.35269 * 103.96134 * 180.11519 * 4 3 2 6 6 C 1.50704 * 126.71253 * 179.87955 * 5 4 3 7 7 N 1.46893 * 109.47295 * 89.70636 * 6 5 4 8 8 C 1.46901 * 111.00360 * 293.95434 * 7 6 5 9 9 C 1.46906 * 110.99932 * 170.00151 * 7 6 5 10 10 C 1.53002 * 109.47053 * 189.99865 * 9 7 6 11 11 N 1.46496 * 109.47237 * 180.02562 * 10 9 7 12 12 C 1.46505 * 119.99970 * 270.00680 * 11 10 9 13 13 C 1.34771 * 120.00241 * 89.99776 * 11 10 9 14 14 O 1.21285 * 119.99914 * 0.02562 * 13 11 10 15 15 C 1.50706 * 120.00395 * 180.02562 * 13 11 10 16 16 S 1.81001 * 109.47179 * 180.02562 * 15 13 11 17 17 C 1.76197 * 99.99854 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99960 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00227 * 180.02562 * 17 16 15 20 20 N 1.31639 * 119.99764 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00338 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47215 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47389 * 119.99880 * 21 19 17 24 24 H 1.48500 * 109.47462 * 239.99793 * 21 19 17 25 25 O 1.34081 * 106.58037 * 359.61182 * 5 4 3 26 26 N 1.20912 * 111.71921 * 0.26603 * 25 5 4 27 27 H 1.09006 * 109.46707 * 59.99991 * 1 2 3 28 28 H 1.08998 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47048 * 300.00137 * 1 2 3 30 30 H 1.08002 * 128.02425 * 0.02562 * 4 3 2 31 31 H 1.09004 * 109.46439 * 329.70623 * 6 5 4 32 32 H 1.08994 * 109.47235 * 209.71424 * 6 5 4 33 33 H 1.08995 * 109.47046 * 296.04847 * 8 7 6 34 34 H 1.09008 * 109.46903 * 56.04730 * 8 7 6 35 35 H 1.08999 * 109.47457 * 176.04446 * 8 7 6 36 36 H 1.08992 * 109.47459 * 309.99948 * 9 7 6 37 37 H 1.09004 * 109.47040 * 70.00098 * 9 7 6 38 38 H 1.09001 * 109.47142 * 300.00160 * 10 9 7 39 39 H 1.09004 * 109.47006 * 60.00213 * 10 9 7 40 40 H 1.08998 * 109.47131 * 89.99861 * 12 11 10 41 41 H 1.08998 * 109.46503 * 209.99644 * 12 11 10 42 42 H 1.08996 * 109.46669 * 329.99368 * 12 11 10 43 43 H 1.08998 * 109.46786 * 300.00563 * 15 13 11 44 44 H 1.08999 * 109.46534 * 60.00763 * 15 13 11 45 45 H 0.97002 * 119.99605 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4527 -0.0060 5 6 3.5397 2.8019 -0.0006 6 6 4.8088 3.6146 -0.0009 7 7 5.2209 3.8785 -1.3859 8 6 5.6023 2.6346 -2.0679 9 6 6.3127 4.8603 -1.4323 10 6 6.5459 5.2957 -2.8804 11 7 7.6350 6.2744 -2.9268 12 6 7.3409 7.7042 -2.8021 13 6 8.9076 5.8594 -3.0840 14 8 9.1511 4.6758 -3.1876 15 6 10.0281 6.8661 -3.1311 16 16 11.6047 6.0042 -3.3498 17 6 12.7053 7.3800 -3.3694 18 1 12.3183 8.3827 -3.2629 19 6 14.0695 7.1753 -3.5228 20 7 14.5411 5.9532 -3.6531 21 14 15.2363 8.6339 -3.5443 22 1 14.4613 9.8901 -3.3813 23 1 16.2107 8.5049 -2.4311 24 1 15.9644 8.6664 -4.8381 25 8 2.2851 3.2751 -0.0009 26 7 1.4701 2.3819 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 4.2447 0.7287 -0.0119 31 1 5.5948 3.0609 0.5128 32 1 4.6351 4.5599 0.5130 33 1 6.4781 2.2066 -1.5802 34 1 4.7761 1.9252 -2.0187 35 1 5.8356 2.8488 -3.1109 36 1 6.0462 5.7289 -0.8302 37 1 7.2234 4.4099 -1.0372 38 1 6.8125 4.4271 -3.4826 39 1 5.6352 5.7461 -3.2755 40 1 7.3721 7.9912 -1.7510 41 1 8.0832 8.2775 -3.3574 42 1 6.3488 7.9074 -3.2050 43 1 9.8686 7.5485 -3.9660 44 1 10.0486 7.4307 -2.1990 45 1 15.4945 5.8102 -3.7606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698985653.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:09 Heat of formation + Delta-G solvation = -14.416030 kcal Electronic energy + Delta-G solvation = -26686.427303 eV Core-core repulsion = 22641.189211 eV Total energy + Delta-G solvation = -4045.238092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.96020 -40.88593 -39.86740 -38.87369 -36.54616 -34.57031 -34.34411 -33.30282 -31.71175 -29.61434 -28.82854 -28.38761 -27.67510 -27.43520 -25.35980 -24.45614 -22.65727 -21.96090 -20.57525 -19.51331 -18.92682 -18.78744 -18.06697 -17.79129 -17.34925 -16.87035 -16.83535 -16.59526 -16.37342 -16.23883 -16.10189 -15.56163 -15.36568 -14.79563 -14.66418 -14.41251 -14.25098 -14.09730 -13.74171 -13.52378 -13.20771 -13.19331 -13.12621 -12.91363 -12.89668 -12.86566 -12.77607 -12.59520 -12.54141 -12.13795 -11.85873 -11.65943 -11.14587 -10.88380 -10.66634 -10.32476 -10.24154 -9.75124 -9.45770 -8.65371 -8.33594 -6.11370 0.32309 1.17239 1.28193 1.42440 1.47910 1.58444 1.60681 1.74619 2.03385 2.17999 2.28974 2.99110 3.00888 3.17081 3.29896 3.74847 3.78858 3.89291 3.95131 4.08137 4.15460 4.21697 4.24669 4.25753 4.38234 4.39844 4.49468 4.50714 4.53720 4.59090 4.62266 4.67840 4.76764 4.82382 4.84694 4.96424 5.01845 5.07567 5.43563 5.53269 5.84754 5.88928 5.92549 6.21287 6.30669 7.08121 7.17769 7.17980 8.75816 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032232 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.501978 B =16981.793046 C =17431.311350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.298 6.298 3 C 0.195 3.805 4 C -0.234 4.234 5 C 0.019 3.981 6 C 0.130 3.870 7 N -0.535 5.535 8 C 0.015 3.985 9 C 0.051 3.949 10 C 0.120 3.880 11 N -0.609 5.609 12 C 0.070 3.930 13 C 0.530 3.470 14 O -0.564 6.564 15 C -0.124 4.124 16 S -0.154 6.154 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.275 1.275 25 O 0.099 5.901 26 N -0.428 5.428 27 H 0.056 0.944 28 H 0.133 0.867 29 H 0.058 0.942 30 H 0.193 0.807 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.022 0.978 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.708 -2.427 8.462 29.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.205 6.205 3 C -0.002 4.002 4 C -0.256 4.256 5 C -0.045 4.045 6 C 0.002 3.998 7 N -0.261 5.261 8 C -0.133 4.133 9 C -0.078 4.078 10 C -0.003 4.003 11 N -0.343 5.343 12 C -0.071 4.071 13 C 0.318 3.682 14 O -0.442 6.442 15 C -0.275 4.275 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.201 1.201 25 O 0.039 5.961 26 N -0.156 5.156 27 H 0.075 0.925 28 H 0.151 0.849 29 H 0.077 0.923 30 H 0.210 0.790 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.048 0.952 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.121 0.879 37 H 0.041 0.959 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -28.812 -3.936 8.037 30.170 hybrid contribution 1.734 0.814 0.345 1.946 sum -27.078 -3.122 8.382 28.517 Atomic orbital electron populations 1.23295 0.75342 1.05936 1.02191 1.86183 1.24185 1.20764 1.89324 1.22310 0.91667 0.85862 1.00395 1.22104 0.94200 0.96257 1.13071 1.24329 0.88005 0.92884 0.99294 1.20673 0.87898 1.00739 0.90467 1.61868 1.37922 1.11506 1.14756 1.22559 0.99814 0.91301 0.99661 1.22400 0.91406 0.96011 0.97939 1.21473 0.89535 0.92702 0.96573 1.47814 1.04860 1.09313 1.72352 1.22136 1.03813 0.77915 1.03262 1.20145 0.84095 0.88608 0.75375 1.90677 1.83778 1.19296 1.50449 1.23386 0.96399 1.01383 1.06339 1.85573 0.97159 1.14371 1.95606 1.23230 0.94288 0.93925 1.57725 0.89876 1.26115 0.99362 0.99857 0.93781 1.70196 1.14665 1.22543 1.47431 0.84913 0.77429 0.77639 0.78023 1.17902 1.19993 1.20057 1.84773 1.12741 1.29851 1.68686 1.74125 1.16393 0.97130 1.27957 0.92494 0.84866 0.92292 0.79008 0.89366 0.85748 0.95247 0.90581 0.91289 0.87899 0.95947 0.92077 0.87047 0.90830 0.90869 0.88001 0.87480 0.87395 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.73 113.37 1.22 1.54 16 2 O -0.30 -5.67 10.57 -90.28 -0.95 -6.62 16 3 C 0.19 4.01 8.01 85.79 0.69 4.69 16 4 C -0.23 -3.91 9.64 22.50 0.22 -3.69 16 5 C 0.02 0.31 6.36 25.00 0.16 0.47 16 6 C 0.13 1.61 5.53 85.56 0.47 2.08 16 7 N -0.54 -8.64 4.75 -927.04 -4.41 -13.05 16 8 C 0.01 0.27 9.10 127.69 1.16 1.43 16 9 C 0.05 0.91 5.28 86.30 0.46 1.37 16 10 C 0.12 2.48 5.38 86.38 0.46 2.94 16 11 N -0.61 -14.74 2.87 -846.75 -2.43 -17.17 16 12 C 0.07 1.07 10.29 127.77 1.31 2.38 16 13 C 0.53 19.06 7.69 87.66 0.67 19.73 16 14 O -0.56 -25.37 15.44 -3.05 -0.05 -25.42 16 15 C -0.12 -4.80 4.71 71.24 0.34 -4.46 16 16 S -0.15 -8.46 20.57 -56.49 -1.16 -9.63 16 17 C -0.54 -30.63 9.50 67.95 0.65 -29.99 16 18 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.76 5.49 84.85 0.47 1.23 16 20 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 21 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 25 O 0.10 1.98 11.19 71.26 0.80 2.78 16 26 N -0.43 -9.44 11.54 -172.60 -1.99 -11.43 16 27 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.09 0.94 8.12 -2.39 -0.02 0.92 16 32 H 0.12 1.06 7.93 -2.39 -0.02 1.04 16 33 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.08 1.26 6.11 -2.38 -0.01 1.25 16 35 H 0.07 1.38 6.47 -2.39 -0.02 1.36 16 36 H 0.10 1.37 7.93 -2.39 -0.02 1.35 16 37 H 0.02 0.53 8.12 -2.38 -0.02 0.51 16 38 H 0.06 1.60 5.83 -2.39 -0.01 1.58 16 39 H 0.11 1.70 7.89 -2.38 -0.02 1.68 16 40 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.19 6.44 -2.39 -0.02 1.18 16 42 H 0.10 0.97 7.89 -2.39 -0.02 0.95 16 43 H 0.11 3.76 7.40 -2.40 -0.02 3.74 16 44 H 0.11 3.75 8.11 -2.40 -0.02 3.74 16 45 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -79.46 391.87 1.38 -78.08 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 1.00 Total: 12.98 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 8.27 Total: -0.28 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -8.55 Total: -96.96 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.20 Total: -29.27 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.63 kcal Total: -79.46 1.38 -78.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698985653.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.666 kcal (2) G-P(sol) polarization free energy of solvation -79.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds