Wall clock time and date at job start Wed Apr 1 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 N 1.46499 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99391 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99670 * 180.02562 * 6 5 4 9 9 S 1.80994 * 109.47242 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00322 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00151 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47215 * 119.99834 * 14 12 10 17 17 H 1.48504 * 109.47001 * 239.99848 * 14 12 10 18 18 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 19 19 O 1.21279 * 119.99925 * 179.72608 * 18 2 1 20 20 C 1.50700 * 119.99961 * 359.72839 * 18 2 1 21 21 H 1.08998 * 109.66911 * 59.99352 * 20 18 2 22 22 C 1.53342 * 109.67363 * 180.49923 * 20 18 2 23 23 C 1.52896 * 108.68792 * 187.21407 * 22 20 18 24 24 N 1.45751 * 110.52445 * 309.33107 * 23 22 20 25 25 C 1.33350 * 124.10748 * 19.01534 * 24 23 22 26 26 O 1.21282 * 118.24794 * 177.77950 * 25 24 23 27 27 C 1.50175 * 123.50819 * 357.79794 * 25 24 23 28 28 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 30 30 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 32 32 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 33 33 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 34 34 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 35 35 H 0.96994 * 120.00305 * 0.02562 * 5 4 3 36 36 H 1.08994 * 109.47220 * 300.00439 * 8 6 5 37 37 H 1.09010 * 109.47053 * 60.00194 * 8 6 5 38 38 H 0.97001 * 120.00029 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.60265 * 307.01619 * 22 20 18 40 40 H 1.09001 * 109.60479 * 67.50899 * 22 20 18 41 41 H 1.09003 * 109.31035 * 188.98623 * 23 22 20 42 42 H 1.09004 * 109.08549 * 69.53071 * 23 22 20 43 43 H 0.97000 * 117.94658 * 199.03987 * 24 23 22 44 44 H 1.09000 * 109.40524 * 257.45934 * 27 25 24 45 45 H 1.08994 * 109.33488 * 137.66775 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 7 3.1786 2.9828 -1.4424 6 6 3.5111 3.5689 -2.6097 7 8 3.2038 3.0461 -3.6599 8 6 4.2646 4.8740 -2.6096 9 16 4.5604 5.4000 -4.3160 10 6 5.4311 6.9041 -4.0261 11 1 5.6239 7.2301 -3.0147 12 6 5.8684 7.6705 -5.0976 13 7 5.6330 7.2734 -6.3302 14 14 6.7921 9.2647 -4.7902 15 1 6.9268 9.4847 -3.3277 16 1 8.1412 9.1816 -5.4051 17 1 6.0420 10.3956 -5.3934 18 6 2.1388 -1.1673 -0.0056 19 8 3.3516 -1.1673 -0.0106 20 6 1.3853 -2.4724 -0.0056 21 1 0.7537 -2.5313 -0.8920 22 6 2.3776 -3.6414 0.0001 23 6 1.5998 -4.9451 -0.1819 24 7 0.4953 -5.0178 0.7663 25 6 -0.0159 -3.9624 1.4013 26 8 -0.9628 -4.1391 2.1382 27 6 0.5180 -2.5667 1.2523 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6106 2.0271 0.5181 32 1 3.1521 1.1371 0.5096 33 1 3.0335 0.9553 -1.9605 34 1 1.4921 1.8454 -1.9520 35 1 3.4247 3.4007 -0.6024 36 1 3.6776 5.6325 -2.0918 37 1 5.2191 4.7425 -2.0997 38 1 5.9382 7.8092 -7.0790 39 1 3.0884 -3.5218 -0.8176 40 1 2.9105 -3.6642 0.9507 41 1 2.2695 -5.7899 -0.0205 42 1 1.2061 -4.9864 -1.1975 43 1 0.1079 -5.8886 0.9471 44 1 1.1187 -2.3136 2.1259 45 1 -0.3149 -1.8685 1.1710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704184023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:31 Heat of formation + Delta-G solvation = -108.734443 kcal Electronic energy + Delta-G solvation = -26793.324038 eV Core-core repulsion = 22743.995992 eV Total energy + Delta-G solvation = -4049.328045 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35980 -39.99521 -39.11071 -36.96976 -36.34182 -34.70724 -33.62019 -32.43591 -30.69690 -30.09637 -28.47754 -27.32219 -25.67957 -25.41066 -24.03499 -22.64629 -20.55816 -19.87666 -19.58718 -17.94197 -17.88363 -17.65857 -17.05365 -16.52269 -16.28201 -15.97777 -15.72852 -15.40219 -15.28816 -14.81520 -14.79461 -14.45184 -14.30690 -14.01800 -13.89939 -13.75205 -13.32916 -13.17898 -12.81124 -12.57296 -12.41518 -12.35311 -12.26833 -12.09971 -11.70237 -11.61021 -11.43398 -11.07490 -11.02687 -10.77598 -10.74126 -10.02952 -9.81947 -9.65427 -9.49284 -9.18451 -9.08686 -8.94352 -8.24143 -6.50888 -6.22504 -3.93059 2.06345 2.12666 2.32716 2.71885 3.07069 3.08323 3.21178 3.28488 3.33876 3.68558 3.78053 3.95467 4.01956 4.13831 4.19623 4.37237 4.55280 4.61013 4.64019 4.69158 4.72209 4.87021 4.94594 5.03866 5.06014 5.12798 5.13325 5.17622 5.25986 5.36772 5.55083 5.59556 5.61721 5.74834 5.88179 6.00846 6.12796 6.18981 6.54914 6.74456 6.81556 7.59212 7.63597 7.65362 7.67242 8.34786 8.57864 9.23012 10.85006 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035660 B = 0.001598 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.001480 B =17514.807410 C =17761.405454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.612 5.612 3 C 0.105 3.895 4 C 0.108 3.892 5 N -0.737 5.737 6 C 0.533 3.467 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.520 3.480 19 O -0.525 6.525 20 C -0.111 4.111 21 H 0.109 0.891 22 C -0.119 4.119 23 C 0.108 3.892 24 N -0.720 5.720 25 C 0.524 3.476 26 O -0.555 6.555 27 C -0.135 4.135 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.399 0.601 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.268 0.732 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.401 0.599 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -22.691 17.296 30.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.345 5.345 3 C -0.019 4.019 4 C -0.018 4.018 5 N -0.393 5.393 6 C 0.319 3.681 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.092 0.908 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.746 3.254 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.307 3.693 19 O -0.400 6.400 20 C -0.132 4.132 21 H 0.126 0.874 22 C -0.157 4.157 23 C -0.016 4.016 24 N -0.373 5.373 25 C 0.311 3.689 26 O -0.433 6.433 27 C -0.175 4.175 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.117 0.883 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.089 0.911 43 H 0.237 0.763 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.788 -23.397 15.672 30.529 hybrid contribution 0.893 1.545 1.711 2.472 sum -10.895 -21.851 17.383 29.973 Atomic orbital electron populations 1.22084 0.78966 1.04023 1.02330 1.47697 1.07216 1.05711 1.73904 1.21628 0.98654 0.84856 0.96731 1.21548 0.97230 0.86459 0.96528 1.45837 1.60289 1.24070 1.09073 1.20314 0.78696 0.85982 0.83074 1.90704 1.52882 1.64453 1.31008 1.23528 1.02102 0.96189 1.08543 1.85407 1.73544 1.27244 0.97237 1.22911 1.41916 1.07958 0.95550 0.90840 1.24997 0.95807 0.98382 0.94428 1.70027 1.44056 1.38138 0.98063 0.86109 0.79193 0.81691 0.78450 1.19614 1.20557 1.20572 1.20457 0.87930 0.84957 0.75917 1.90759 1.13627 1.87076 1.48522 1.21455 0.98127 0.93510 1.00141 0.87352 1.21749 0.97309 0.91206 1.05431 1.21471 0.88332 0.99010 0.92786 1.45516 1.36221 1.10576 1.44953 1.19974 0.82621 0.87057 0.79294 1.90795 1.28095 1.85782 1.38657 1.21905 1.01593 0.94970 0.99011 0.91666 0.90194 0.90575 0.89556 0.88929 0.91277 0.91584 0.76756 0.89145 0.89115 0.92231 0.88288 0.90056 0.89729 0.91083 0.76332 0.87568 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 8.80 59.84 0.53 0.79 16 2 N -0.61 -4.22 2.87 -181.58 -0.52 -4.75 16 3 C 0.10 0.82 5.52 -4.04 -0.02 0.80 16 4 C 0.11 1.23 6.00 -4.04 -0.02 1.21 16 5 N -0.74 -9.55 5.56 -60.30 -0.34 -9.88 16 6 C 0.53 9.90 7.85 -10.98 -0.09 9.82 16 7 O -0.52 -11.80 15.86 5.56 0.09 -11.71 16 8 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 14 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.52 4.30 7.05 -10.98 -0.08 4.22 16 19 O -0.52 -6.40 15.48 5.56 0.09 -6.31 16 20 C -0.11 -0.58 1.77 -91.55 -0.16 -0.74 16 21 H 0.11 0.42 7.38 -51.93 -0.38 0.04 16 22 C -0.12 -0.57 4.71 -26.61 -0.13 -0.70 16 23 C 0.11 0.32 7.17 -4.50 -0.03 0.28 16 24 N -0.72 -3.43 5.45 -61.40 -0.33 -3.77 16 25 C 0.52 3.80 7.71 -11.87 -0.09 3.71 16 26 O -0.55 -6.39 17.78 5.56 0.10 -6.29 16 27 C -0.13 -0.70 4.86 -28.10 -0.14 -0.83 16 28 H 0.06 0.17 7.21 -51.93 -0.37 -0.20 16 29 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 30 H 0.08 0.21 5.92 -51.93 -0.31 -0.10 16 31 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 32 H 0.09 0.82 7.42 -51.93 -0.39 0.44 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 3.83 8.47 -40.82 -0.35 3.49 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.10 0.54 7.89 -51.93 -0.41 0.13 16 40 H 0.08 0.46 8.12 -51.93 -0.42 0.03 16 41 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 42 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 43 H 0.40 1.59 8.80 -40.82 -0.36 1.23 16 44 H 0.11 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.11 0.46 5.02 -51.93 -0.26 0.20 16 LS Contribution 385.72 15.07 5.81 5.81 Total: -1.00 -39.89 385.72 -8.01 -47.90 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.59 Total: -0.85 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 0.19 Total: 2.79 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: -0.46 Total: -43.80 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: 0.27 Total: -24.32 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -39.89 -8.01 -47.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704184023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.839 kcal (2) G-P(sol) polarization free energy of solvation -39.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds