Wall clock time and date at job start Wed Apr 1 2020 01:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.53002 * 109.47325 * 270.27624 * 3 2 1 5 5 N 1.46499 * 109.46936 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99391 * 179.97438 * 5 4 3 7 7 O 1.21277 * 120.00102 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99670 * 180.02562 * 6 5 4 9 9 S 1.80994 * 109.47242 * 179.97438 * 8 6 5 10 10 C 1.76197 * 100.00322 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99759 * 359.97438 * 10 9 8 12 12 C 1.38800 * 120.00151 * 180.02562 * 10 9 8 13 13 N 1.31627 * 120.00074 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00057 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47030 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47215 * 119.99834 * 14 12 10 17 17 H 1.48504 * 109.47001 * 239.99848 * 14 12 10 18 18 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 19 19 O 1.21279 * 119.99925 * 179.72608 * 18 2 1 20 20 C 1.50700 * 119.99961 * 359.72839 * 18 2 1 21 21 H 1.08998 * 109.66911 * 59.99352 * 20 18 2 22 22 C 1.53342 * 109.67363 * 180.49923 * 20 18 2 23 23 C 1.52896 * 108.68792 * 187.21407 * 22 20 18 24 24 N 1.45751 * 110.52445 * 309.33107 * 23 22 20 25 25 C 1.33350 * 124.10748 * 19.01534 * 24 23 22 26 26 O 1.21282 * 118.24794 * 177.77950 * 25 24 23 27 27 C 1.50175 * 123.50819 * 357.79794 * 25 24 23 28 28 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 29 29 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 30 30 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 31 31 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 32 32 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 33 33 H 1.08998 * 109.46465 * 299.99693 * 4 3 2 34 34 H 1.08993 * 109.47021 * 59.99589 * 4 3 2 35 35 H 0.96994 * 120.00305 * 0.02562 * 5 4 3 36 36 H 1.08994 * 109.47220 * 300.00439 * 8 6 5 37 37 H 1.09010 * 109.47053 * 60.00194 * 8 6 5 38 38 H 0.97001 * 120.00029 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.60265 * 307.01619 * 22 20 18 40 40 H 1.09001 * 109.60479 * 67.50899 * 22 20 18 41 41 H 1.09003 * 109.31035 * 188.98623 * 23 22 20 42 42 H 1.09004 * 109.08549 * 69.53071 * 23 22 20 43 43 H 0.97000 * 117.94658 * 199.03987 * 24 23 22 44 44 H 1.09000 * 109.40524 * 257.45934 * 27 25 24 45 45 H 1.08994 * 109.33488 * 137.66775 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4465 1.7138 -1.4425 5 7 3.1786 2.9828 -1.4424 6 6 3.5111 3.5689 -2.6097 7 8 3.2038 3.0461 -3.6599 8 6 4.2646 4.8740 -2.6096 9 16 4.5604 5.4000 -4.3160 10 6 5.4311 6.9041 -4.0261 11 1 5.6239 7.2301 -3.0147 12 6 5.8684 7.6705 -5.0976 13 7 5.6330 7.2734 -6.3302 14 14 6.7921 9.2647 -4.7902 15 1 6.9268 9.4847 -3.3277 16 1 8.1412 9.1816 -5.4051 17 1 6.0420 10.3956 -5.3934 18 6 2.1388 -1.1673 -0.0056 19 8 3.3516 -1.1673 -0.0106 20 6 1.3853 -2.4724 -0.0056 21 1 0.7537 -2.5313 -0.8920 22 6 2.3776 -3.6414 0.0001 23 6 1.5998 -4.9451 -0.1819 24 7 0.4953 -5.0178 0.7663 25 6 -0.0159 -3.9624 1.4013 26 8 -0.9628 -4.1391 2.1382 27 6 0.5180 -2.5667 1.2523 28 1 -0.3634 -0.0049 1.0276 29 1 -0.3634 0.8924 -0.5096 30 1 -0.3634 -0.8874 -0.5181 31 1 1.6106 2.0271 0.5181 32 1 3.1521 1.1371 0.5096 33 1 3.0335 0.9553 -1.9605 34 1 1.4921 1.8454 -1.9520 35 1 3.4247 3.4007 -0.6024 36 1 3.6776 5.6325 -2.0918 37 1 5.2191 4.7425 -2.0997 38 1 5.9382 7.8092 -7.0790 39 1 3.0884 -3.5218 -0.8176 40 1 2.9105 -3.6642 0.9507 41 1 2.2695 -5.7899 -0.0205 42 1 1.2061 -4.9864 -1.1975 43 1 0.1079 -5.8886 0.9471 44 1 1.1187 -2.3136 2.1259 45 1 -0.3149 -1.8685 1.1710 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704184023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:30 Heat of formation + Delta-G solvation = -141.040881 kcal Electronic energy + Delta-G solvation = -26794.724950 eV Core-core repulsion = 22743.995992 eV Total energy + Delta-G solvation = -4050.728958 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.90571 -40.77554 -40.37574 -37.57462 -37.06722 -35.73310 -34.58478 -34.21767 -31.82170 -30.69316 -29.54755 -27.82195 -27.65165 -26.14820 -24.61636 -23.33377 -21.90863 -20.41069 -20.17451 -19.79266 -18.45625 -18.22158 -17.90432 -17.66048 -17.19267 -16.87989 -16.76199 -16.70128 -16.26537 -16.14479 -15.70848 -15.25925 -15.16444 -14.95313 -14.67490 -14.64493 -14.46183 -14.33074 -13.82268 -13.59586 -13.20994 -13.16005 -13.08838 -12.91457 -12.80275 -12.74577 -12.59061 -12.35717 -12.10045 -12.01435 -11.71737 -11.41324 -11.15803 -11.06114 -10.63766 -10.27511 -10.18992 -10.08617 -9.80973 -8.67022 -8.34794 -6.12932 1.24455 1.41853 1.42592 1.48927 1.56058 1.57994 1.58602 1.79890 2.27073 2.31234 2.43608 2.99606 3.24585 3.32727 3.54690 3.61484 3.73150 3.82946 3.90026 4.00886 4.10741 4.19946 4.29892 4.30583 4.38345 4.39864 4.51178 4.55898 4.63905 4.69844 4.71774 4.82995 4.89795 4.96783 5.01489 5.17542 5.27743 5.42538 5.46886 5.79561 6.20282 6.25572 6.29823 6.46133 7.04565 7.06754 7.16254 7.21207 8.74730 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035660 B = 0.001598 C = 0.001576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.001480 B =17514.807410 C =17761.405454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.609 5.609 3 C 0.113 3.887 4 C 0.112 3.888 5 N -0.710 5.710 6 C 0.534 3.466 7 O -0.567 6.567 8 C -0.129 4.129 9 S -0.154 6.154 10 C -0.545 4.545 11 H 0.084 0.916 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.275 1.275 17 H -0.274 1.274 18 C 0.515 3.485 19 O -0.571 6.571 20 C -0.103 4.103 21 H 0.127 0.873 22 C -0.119 4.119 23 C 0.112 3.888 24 N -0.712 5.712 25 C 0.522 3.478 26 O -0.603 6.603 27 C -0.126 4.126 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.419 0.581 36 H 0.115 0.885 37 H 0.109 0.891 38 H 0.271 0.729 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.406 0.594 44 H 0.105 0.895 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 -22.339 19.289 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.342 5.342 3 C -0.011 4.011 4 C -0.013 4.013 5 N -0.365 5.365 6 C 0.320 3.680 7 O -0.445 6.445 8 C -0.280 4.280 9 S 0.073 5.927 10 C -0.693 4.693 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.821 3.179 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.199 1.199 18 C 0.304 3.696 19 O -0.450 6.450 20 C -0.124 4.124 21 H 0.145 0.855 22 C -0.157 4.157 23 C -0.012 4.012 24 N -0.362 5.362 25 C 0.309 3.691 26 O -0.486 6.486 27 C -0.166 4.166 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.257 0.743 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.242 0.758 44 H 0.123 0.877 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -12.306 -23.069 17.714 31.581 hybrid contribution 1.021 1.326 1.143 2.027 sum -11.286 -21.742 18.857 30.914 Atomic orbital electron populations 1.22359 0.76802 1.05107 1.03889 1.47820 1.08533 1.04984 1.72836 1.21545 0.99312 0.86185 0.94050 1.21616 0.96185 0.84576 0.98938 1.45536 1.58657 1.24016 1.08257 1.20097 0.78503 0.85575 0.83810 1.90692 1.55117 1.65588 1.33121 1.23368 1.03795 0.97556 1.03297 1.85596 1.74122 1.28326 1.04621 1.23245 1.41886 1.07987 0.96207 0.89790 1.26136 0.96634 1.02439 0.93990 1.70190 1.45421 1.39946 0.99257 0.84892 0.77473 0.76390 0.79099 1.17975 1.20034 1.19891 1.20982 0.87549 0.86129 0.74929 1.90739 1.15685 1.87777 1.50755 1.21441 0.98034 0.91958 1.00942 0.85520 1.21727 0.97324 0.92096 1.04583 1.21594 0.87902 0.98625 0.93055 1.45547 1.36002 1.10368 1.44317 1.20266 0.82008 0.88050 0.78743 1.90775 1.30332 1.86521 1.40950 1.21851 1.01848 0.94122 0.98773 0.89817 0.89500 0.89266 0.86214 0.89821 0.94282 0.91502 0.74342 0.86704 0.87234 0.92000 0.89065 0.91133 0.87776 0.89390 0.75792 0.87709 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.29 8.80 127.77 1.12 1.42 16 2 N -0.61 -7.25 2.87 -846.77 -2.43 -9.69 16 3 C 0.11 1.53 5.52 86.38 0.48 2.00 16 4 C 0.11 2.44 6.00 86.38 0.52 2.96 16 5 N -0.71 -17.18 5.56 -463.06 -2.57 -19.75 16 6 C 0.53 19.55 7.85 87.66 0.69 20.24 16 7 O -0.57 -26.47 15.86 -3.02 -0.05 -26.52 16 8 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 9 S -0.15 -8.53 20.57 -56.49 -1.16 -9.69 16 10 C -0.55 -31.03 9.50 67.95 0.65 -30.39 16 11 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 12 C 0.01 0.72 5.49 84.86 0.47 1.19 16 13 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 14 Si 1.00 43.43 29.55 68.60 2.03 45.46 16 15 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 C 0.52 8.02 7.05 87.66 0.62 8.64 16 19 O -0.57 -14.00 15.48 -3.03 -0.05 -14.04 16 20 C -0.10 -0.91 1.77 -11.40 -0.02 -0.93 16 21 H 0.13 0.68 7.38 -2.39 -0.02 0.66 16 22 C -0.12 -1.02 4.71 30.67 0.14 -0.88 16 23 C 0.11 0.43 7.17 86.49 0.62 1.05 16 24 N -0.71 -5.68 5.45 -467.36 -2.55 -8.22 16 25 C 0.52 6.97 7.71 87.71 0.68 7.65 16 26 O -0.60 -13.63 17.78 -3.03 -0.05 -13.69 16 27 C -0.13 -1.10 4.86 29.71 0.14 -0.95 16 28 H 0.08 0.16 7.21 -2.39 -0.02 0.14 16 29 H 0.09 0.36 8.07 -2.39 -0.02 0.34 16 30 H 0.09 0.23 5.92 -2.39 -0.01 0.21 16 31 H 0.12 0.87 8.07 -2.39 -0.02 0.85 16 32 H 0.08 1.35 7.42 -2.38 -0.02 1.33 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.42 6.84 8.47 -92.71 -0.79 6.05 16 36 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 37 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 38 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.09 0.97 7.89 -2.39 -0.02 0.95 16 40 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 41 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 42 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.41 2.66 8.80 -92.71 -0.82 1.84 16 44 H 0.10 0.98 8.09 -2.39 -0.02 0.96 16 45 H 0.13 0.74 5.02 -2.39 -0.01 0.72 16 Total: -1.00 -90.95 385.72 -0.57 -91.53 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -0.57 Total: 12.90 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: 6.54 Total: 7.40 kcal Atomic # 7 Polarization: -86.08 SS G_CDS: -7.27 Total: -93.34 kcal Atomic # 8 Polarization: -54.10 SS G_CDS: -0.15 Total: -54.25 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -90.95 -0.57 -91.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704184023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.514 kcal (2) G-P(sol) polarization free energy of solvation -90.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds