Wall clock time and date at job start Wed Apr 1 2020 01:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.53000 * 109.47637 * 269.72749 * 3 2 1 5 5 N 1.46493 * 109.47637 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00500 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99637 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00170 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.29891 * 319.99327 * 8 6 5 10 10 C 1.52914 * 109.30457 * 79.58124 * 8 6 5 11 11 C 1.53266 * 108.71483 * 171.25893 * 10 8 6 12 12 C 1.53069 * 108.24928 * 292.18652 * 11 10 8 13 13 C 1.50170 * 109.89296 * 48.96525 * 12 11 10 14 14 O 1.21277 * 118.24621 * 162.40278 * 13 12 11 15 15 N 1.33361 * 123.50558 * 342.41696 * 13 12 11 16 16 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 17 17 O 1.21283 * 119.99649 * 180.02562 * 16 2 1 18 18 C 1.50694 * 119.99988 * 0.02562 * 16 2 1 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 2 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47396 * 59.99622 * 24 22 20 26 26 H 1.48504 * 109.46972 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46804 * 299.99684 * 24 22 20 28 28 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 29 29 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 30 30 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 31 31 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 32 32 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 33 33 H 1.09002 * 109.46747 * 300.00171 * 4 3 2 34 34 H 1.08996 * 109.47074 * 59.99445 * 4 3 2 35 35 H 0.97010 * 119.99974 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.60161 * 290.81674 * 10 8 6 37 37 H 1.09000 * 109.60557 * 51.30829 * 10 8 6 38 38 H 1.09002 * 109.70728 * 172.53240 * 11 10 8 39 39 H 1.09005 * 109.84744 * 51.91627 * 11 10 8 40 40 H 1.09002 * 109.39349 * 288.83688 * 12 11 10 41 41 H 1.09003 * 109.39871 * 169.09795 * 12 11 10 42 42 H 0.96998 * 117.93961 * 182.25074 * 15 13 12 43 43 H 1.08998 * 109.47224 * 299.99701 * 18 16 2 44 44 H 1.09002 * 109.47054 * 60.00213 * 18 16 2 45 45 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4585 1.7069 -1.4424 5 7 3.1906 2.9759 -1.4424 6 6 3.5319 3.5571 -2.6096 7 8 3.2333 3.0292 -3.6599 8 6 4.2854 4.8621 -2.6095 9 1 3.8899 5.5064 -1.8242 10 6 5.7664 4.5907 -2.3425 11 6 6.5514 5.8888 -2.5611 12 6 6.5051 6.2317 -4.0521 13 6 5.0909 6.1523 -4.5509 14 8 4.8214 6.6957 -5.6011 15 7 4.1155 5.5165 -3.9007 16 6 2.1388 -1.1673 0.0056 17 8 3.3516 -1.1673 0.0060 18 6 1.3852 -2.4723 0.0112 19 16 2.5613 -3.8482 0.0171 20 6 1.4412 -5.2082 0.0238 21 1 0.3759 -5.0304 0.0229 22 6 1.9279 -6.5080 0.0301 23 7 3.2262 -6.7247 0.0307 24 14 0.7403 -7.9500 0.0365 25 1 -0.1143 -7.8928 -1.1766 26 1 1.5064 -9.2221 0.0422 27 1 -0.1152 -7.8813 1.2483 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5096 31 1 1.6064 2.0295 0.5096 32 1 3.1477 1.1395 0.5181 33 1 3.0497 0.9460 -1.9520 34 1 1.5083 1.8361 -1.9605 35 1 3.4291 3.3983 -0.6023 36 1 5.8972 4.2570 -1.3130 37 1 6.1267 3.8228 -3.0270 38 1 7.5863 5.7495 -2.2484 39 1 6.0996 6.6961 -1.9846 40 1 7.1244 5.5255 -4.6053 41 1 6.8864 7.2416 -4.2034 42 1 3.2380 5.4875 -4.3132 43 1 0.7583 -2.5260 0.9012 44 1 0.7589 -2.5340 -0.8788 45 1 3.5663 -7.6331 0.0355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704216850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:38 Heat of formation + Delta-G solvation = -110.796429 kcal Electronic energy + Delta-G solvation = -26763.481017 eV Core-core repulsion = 22714.063557 eV Total energy + Delta-G solvation = -4049.417460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18237 -39.84554 -39.36310 -36.77450 -36.08077 -34.78443 -33.48853 -32.46004 -31.30355 -30.11473 -28.37064 -26.68803 -25.67883 -25.41271 -23.37240 -23.08694 -21.21848 -19.66198 -19.38342 -18.20419 -17.75501 -17.49169 -16.92247 -16.73312 -16.20772 -15.84808 -15.67524 -15.34261 -15.10676 -14.83100 -14.59750 -14.53455 -14.24678 -14.07167 -13.86945 -13.60194 -13.30879 -13.03466 -12.61168 -12.56877 -12.48537 -12.43729 -12.12080 -11.89304 -11.66119 -11.58829 -11.58220 -11.07934 -11.06206 -10.79665 -10.60303 -10.11849 -9.85584 -9.58552 -9.47903 -9.46669 -9.08914 -8.75080 -8.28213 -6.54455 -6.24603 -3.95875 2.07754 2.15469 2.43390 2.82607 2.91407 3.06820 3.21413 3.24616 3.27428 3.55017 4.00062 4.02875 4.08407 4.17175 4.21228 4.40981 4.57077 4.57995 4.67319 4.84433 4.99170 5.00677 5.10574 5.12557 5.13776 5.14241 5.29232 5.30844 5.33521 5.48851 5.56166 5.60103 5.68055 5.72158 5.84018 5.92568 6.07116 6.31062 6.46112 6.84244 7.00325 7.34655 7.56218 7.71607 7.81616 8.31747 8.40916 9.20608 10.82739 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.001753 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.617219 B =15968.817793 C =16343.997206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.109 3.891 4 C 0.102 3.898 5 N -0.720 5.720 6 C 0.501 3.499 7 O -0.522 6.522 8 C 0.129 3.871 9 H 0.100 0.900 10 C -0.131 4.131 11 C -0.121 4.121 12 C -0.138 4.138 13 C 0.525 3.475 14 O -0.553 6.553 15 N -0.701 5.701 16 C 0.534 3.466 17 O -0.511 6.511 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.402 0.598 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.405 0.595 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.319 27.517 1.538 27.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.360 5.360 3 C -0.015 4.015 4 C -0.023 4.023 5 N -0.373 5.373 6 C 0.284 3.716 7 O -0.397 6.397 8 C 0.019 3.981 9 H 0.118 0.882 10 C -0.169 4.169 11 C -0.159 4.159 12 C -0.178 4.178 13 C 0.312 3.688 14 O -0.431 6.431 15 N -0.355 5.355 16 C 0.322 3.678 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.237 0.763 36 H 0.113 0.887 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.241 0.759 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.128 27.259 0.318 27.343 hybrid contribution -2.599 -0.915 0.351 2.778 sum -0.471 26.344 0.669 26.357 Atomic orbital electron populations 1.21817 0.79174 1.03410 1.01983 1.47744 1.07002 1.05115 1.76105 1.21422 0.98940 0.85956 0.95195 1.21833 0.97030 0.85014 0.98439 1.45781 1.58516 1.24546 1.08458 1.20767 0.79882 0.86762 0.84155 1.90797 1.53606 1.64138 1.31136 1.20878 0.97628 0.92098 0.87499 0.88212 1.21893 0.91198 0.99446 1.04360 1.21655 1.01844 0.97008 0.95349 1.21707 0.93403 1.05403 0.97309 1.20181 0.87567 0.77247 0.83809 1.90782 1.82754 1.46307 1.23292 1.45242 1.14354 1.54732 1.21131 1.20437 0.87976 0.84586 0.74827 1.90704 1.13697 1.86716 1.47374 1.23561 1.04638 0.97060 1.04861 1.85396 1.07973 0.93337 1.96726 1.22808 0.94259 0.92180 1.59215 0.90951 1.24993 0.95690 0.98384 0.94479 1.70003 1.11757 1.21814 1.46662 0.86222 0.80180 0.80281 0.78810 1.19917 1.20790 1.19926 0.92438 0.91321 0.90366 0.90166 0.89071 0.90367 0.91161 0.76347 0.88708 0.89797 0.89596 0.90616 0.87847 0.87828 0.75859 0.89120 0.89098 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.24 59.84 0.61 1.31 16 2 N -0.62 -7.63 2.87 -181.58 -0.52 -8.15 16 3 C 0.11 1.00 5.52 -4.05 -0.02 0.98 16 4 C 0.10 1.01 6.00 -4.05 -0.02 0.98 16 5 N -0.72 -5.02 5.56 -60.30 -0.33 -5.35 16 6 C 0.50 4.47 6.98 -10.99 -0.08 4.39 16 7 O -0.52 -7.34 16.39 5.55 0.09 -7.25 16 8 C 0.13 0.73 3.46 -69.53 -0.24 0.49 16 9 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 10 C -0.13 -0.57 5.27 -26.64 -0.14 -0.71 16 11 C -0.12 -0.40 6.04 -26.56 -0.16 -0.56 16 12 C -0.14 -0.79 6.02 -28.10 -0.17 -0.96 16 13 C 0.52 5.09 7.71 -11.87 -0.09 5.00 16 14 O -0.55 -7.86 17.78 5.56 0.10 -7.76 16 15 N -0.70 -5.87 4.79 -55.99 -0.27 -6.14 16 16 C 0.53 9.43 7.69 -10.98 -0.08 9.35 16 17 O -0.51 -10.91 15.44 5.56 0.09 -10.83 16 18 C -0.15 -2.93 4.71 36.00 0.17 -2.76 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 21 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -25.88 13.22 55.49 0.73 -25.15 16 24 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 31 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 32 H 0.09 0.94 7.42 -51.93 -0.39 0.56 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.40 1.33 8.47 -40.82 -0.35 0.98 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.18 8.13 -51.93 -0.42 -0.25 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.40 3.77 8.45 -40.82 -0.34 3.42 16 43 H 0.09 1.62 8.11 -51.92 -0.42 1.20 16 44 H 0.09 1.64 7.40 -51.91 -0.38 1.26 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -39.87 392.06 -8.30 -48.17 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.82 Total: -0.50 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.03 Total: 4.75 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: -0.39 Total: -44.79 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: 0.28 Total: -25.84 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.87 -8.30 -48.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704216850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.628 kcal (2) G-P(sol) polarization free energy of solvation -39.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds