Wall clock time and date at job start Wed Apr 1 2020 01:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46493 * 120.00444 * 2 1 4 4 C 1.53000 * 109.47637 * 269.72749 * 3 2 1 5 5 N 1.46493 * 109.47637 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00500 * 180.02562 * 5 4 3 7 7 O 1.21284 * 119.99637 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00170 * 180.02562 * 6 5 4 9 9 H 1.09004 * 109.29891 * 319.99327 * 8 6 5 10 10 C 1.52914 * 109.30457 * 79.58124 * 8 6 5 11 11 C 1.53266 * 108.71483 * 171.25893 * 10 8 6 12 12 C 1.53069 * 108.24928 * 292.18652 * 11 10 8 13 13 C 1.50170 * 109.89296 * 48.96525 * 12 11 10 14 14 O 1.21277 * 118.24621 * 162.40278 * 13 12 11 15 15 N 1.33361 * 123.50558 * 342.41696 * 13 12 11 16 16 C 1.34784 * 119.99635 * 179.72711 * 2 1 3 17 17 O 1.21283 * 119.99649 * 180.02562 * 16 2 1 18 18 C 1.50694 * 119.99988 * 0.02562 * 16 2 1 19 19 S 1.81005 * 109.47244 * 179.97438 * 18 16 2 20 20 C 1.76192 * 100.00090 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00308 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99747 * 180.02562 * 20 19 18 23 23 N 1.31628 * 120.00171 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99848 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47396 * 59.99622 * 24 22 20 26 26 H 1.48504 * 109.46972 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46804 * 299.99684 * 24 22 20 28 28 H 1.08995 * 109.47693 * 270.27497 * 1 2 3 29 29 H 1.09003 * 109.47006 * 30.27410 * 1 2 3 30 30 H 1.09004 * 109.47665 * 150.27102 * 1 2 3 31 31 H 1.09002 * 109.47192 * 29.72648 * 3 2 1 32 32 H 1.08996 * 109.47342 * 149.72358 * 3 2 1 33 33 H 1.09002 * 109.46747 * 300.00171 * 4 3 2 34 34 H 1.08996 * 109.47074 * 59.99445 * 4 3 2 35 35 H 0.97010 * 119.99974 * 359.97438 * 5 4 3 36 36 H 1.09004 * 109.60161 * 290.81674 * 10 8 6 37 37 H 1.09000 * 109.60557 * 51.30829 * 10 8 6 38 38 H 1.09002 * 109.70728 * 172.53240 * 11 10 8 39 39 H 1.09005 * 109.84744 * 51.91627 * 11 10 8 40 40 H 1.09002 * 109.39349 * 288.83688 * 12 11 10 41 41 H 1.09003 * 109.39871 * 169.09795 * 12 11 10 42 42 H 0.96998 * 117.93961 * 182.25074 * 15 13 12 43 43 H 1.08998 * 109.47224 * 299.99701 * 18 16 2 44 44 H 1.09002 * 109.47054 * 60.00213 * 18 16 2 45 45 H 0.97000 * 119.99868 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4585 1.7069 -1.4424 5 7 3.1906 2.9759 -1.4424 6 6 3.5319 3.5571 -2.6096 7 8 3.2333 3.0292 -3.6599 8 6 4.2854 4.8621 -2.6095 9 1 3.8899 5.5064 -1.8242 10 6 5.7664 4.5907 -2.3425 11 6 6.5514 5.8888 -2.5611 12 6 6.5051 6.2317 -4.0521 13 6 5.0909 6.1523 -4.5509 14 8 4.8214 6.6957 -5.6011 15 7 4.1155 5.5165 -3.9007 16 6 2.1388 -1.1673 0.0056 17 8 3.3516 -1.1673 0.0060 18 6 1.3852 -2.4723 0.0112 19 16 2.5613 -3.8482 0.0171 20 6 1.4412 -5.2082 0.0238 21 1 0.3759 -5.0304 0.0229 22 6 1.9279 -6.5080 0.0301 23 7 3.2262 -6.7247 0.0307 24 14 0.7403 -7.9500 0.0365 25 1 -0.1143 -7.8928 -1.1766 26 1 1.5064 -9.2221 0.0422 27 1 -0.1152 -7.8813 1.2483 28 1 -0.3634 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5181 30 1 -0.3634 -0.8924 -0.5096 31 1 1.6064 2.0295 0.5096 32 1 3.1477 1.1395 0.5181 33 1 3.0497 0.9460 -1.9520 34 1 1.5083 1.8361 -1.9605 35 1 3.4291 3.3983 -0.6023 36 1 5.8972 4.2570 -1.3130 37 1 6.1267 3.8228 -3.0270 38 1 7.5863 5.7495 -2.2484 39 1 6.0996 6.6961 -1.9846 40 1 7.1244 5.5255 -4.6053 41 1 6.8864 7.2416 -4.2034 42 1 3.2380 5.4875 -4.3132 43 1 0.7583 -2.5260 0.9012 44 1 0.7589 -2.5340 -0.8788 45 1 3.5663 -7.6331 0.0355 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704216850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:57:37 Heat of formation + Delta-G solvation = -143.436069 kcal Electronic energy + Delta-G solvation = -26764.896378 eV Core-core repulsion = 22714.063557 eV Total energy + Delta-G solvation = -4050.832821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85514 -40.94480 -40.30119 -37.50307 -37.08705 -35.72888 -34.59000 -33.98833 -32.23955 -31.00750 -29.44217 -27.69841 -27.48047 -26.18292 -24.03400 -23.79901 -21.97128 -20.66964 -20.14269 -19.56852 -18.92108 -18.25218 -17.96070 -17.67566 -17.13084 -16.88593 -16.82862 -16.51435 -16.27962 -16.05701 -15.70691 -15.25539 -15.16302 -14.86779 -14.59364 -14.53718 -14.37092 -14.28016 -14.13658 -13.56555 -13.24528 -13.17050 -13.09092 -13.03140 -12.86344 -12.69303 -12.63668 -12.36574 -12.02832 -11.90260 -11.74048 -11.41905 -11.13371 -10.96372 -10.81898 -10.30165 -10.27918 -10.19332 -9.78069 -8.67815 -8.35110 -6.13382 1.22920 1.37833 1.39506 1.43406 1.47549 1.54215 1.55186 1.81488 2.17235 2.27128 2.44033 2.99006 3.25807 3.48631 3.55441 3.64947 3.69850 3.83188 3.85051 4.02812 4.04979 4.21158 4.24710 4.32908 4.39098 4.48440 4.51034 4.70025 4.74756 4.77105 4.81672 4.90907 4.93910 4.97632 5.08340 5.20470 5.28047 5.40955 5.54522 5.60932 6.18387 6.18883 6.20896 6.41287 7.05490 7.06118 7.10224 7.12996 8.73768 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.001753 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.617219 B =15968.817793 C =16343.997206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.112 3.888 4 C 0.111 3.889 5 N -0.700 5.700 6 C 0.499 3.501 7 O -0.582 6.582 8 C 0.133 3.867 9 H 0.148 0.852 10 C -0.132 4.132 11 C -0.110 4.110 12 C -0.137 4.137 13 C 0.517 3.483 14 O -0.610 6.610 15 N -0.702 5.702 16 C 0.530 3.470 17 O -0.560 6.560 18 C -0.126 4.126 19 S -0.154 6.154 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.263 1.263 26 H -0.279 1.279 27 H -0.260 1.260 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.030 0.970 34 H 0.071 0.929 35 H 0.425 0.575 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.396 0.604 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 29.334 3.807 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.011 4.011 4 C -0.015 4.015 5 N -0.354 5.354 6 C 0.284 3.716 7 O -0.461 6.461 8 C 0.025 3.975 9 H 0.165 0.835 10 C -0.170 4.170 11 C -0.148 4.148 12 C -0.176 4.176 13 C 0.306 3.694 14 O -0.492 6.492 15 N -0.352 5.352 16 C 0.318 3.682 17 O -0.438 6.438 18 C -0.277 4.277 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.188 1.188 26 H -0.205 1.205 27 H -0.184 1.184 28 H 0.097 0.903 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.150 0.850 32 H 0.099 0.901 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.263 0.737 36 H 0.142 0.858 37 H 0.076 0.924 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.132 0.868 42 H 0.231 0.769 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.314 29.126 2.672 29.250 hybrid contribution -2.115 -1.360 -0.348 2.538 sum -1.800 27.766 2.323 27.921 Atomic orbital electron populations 1.22150 0.76542 1.04753 1.03796 1.47716 1.08623 1.04407 1.73623 1.21646 0.99312 0.85414 0.94763 1.21548 0.96399 0.85054 0.98484 1.45559 1.57405 1.23260 1.09178 1.21420 0.79137 0.87479 0.83540 1.90781 1.56077 1.65898 1.33335 1.21194 0.98395 0.90681 0.87243 0.83525 1.21987 0.90014 0.99586 1.05417 1.21666 1.03064 0.96721 0.93312 1.21773 0.90402 1.06127 0.99304 1.20949 0.89050 0.76317 0.83063 1.90746 1.83797 1.48931 1.25775 1.45392 1.13797 1.54041 1.22014 1.20161 0.87309 0.85594 0.75132 1.90687 1.15538 1.87443 1.50091 1.23390 1.02774 0.95089 1.06411 1.85559 1.12683 0.97375 1.97037 1.23162 0.94647 0.92661 1.58963 0.89873 1.26129 0.97591 1.01705 0.93745 1.70175 1.14108 1.22516 1.47925 0.85016 0.77632 0.75912 0.79516 1.18810 1.20457 1.18450 0.90302 0.88057 0.91113 0.85001 0.90109 0.95156 0.91068 0.73676 0.85783 0.92356 0.87559 0.88576 0.87903 0.86797 0.76854 0.87151 0.87689 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.97 10.24 127.77 1.31 2.28 16 2 N -0.61 -13.59 2.87 -846.78 -2.43 -16.02 16 3 C 0.11 1.75 5.52 86.38 0.48 2.22 16 4 C 0.11 2.07 6.00 86.38 0.52 2.59 16 5 N -0.70 -8.25 5.56 -463.08 -2.57 -10.82 16 6 C 0.50 8.41 6.98 87.66 0.61 9.02 16 7 O -0.58 -16.94 16.39 -3.04 -0.05 -16.99 16 8 C 0.13 1.21 3.46 44.36 0.15 1.37 16 9 H 0.15 0.06 8.14 -2.39 -0.02 0.04 16 10 C -0.13 -0.82 5.27 30.65 0.16 -0.66 16 11 C -0.11 -0.37 6.04 30.71 0.19 -0.18 16 12 C -0.14 -1.41 6.02 29.70 0.18 -1.23 16 13 C 0.52 10.11 7.71 87.71 0.68 10.78 16 14 O -0.61 -18.23 17.78 -3.02 -0.05 -18.28 16 15 N -0.70 -11.48 4.79 -450.24 -2.16 -13.64 16 16 C 0.53 18.62 7.69 87.65 0.67 19.30 16 17 O -0.56 -24.63 15.44 -3.04 -0.05 -24.68 16 18 C -0.13 -4.85 4.71 71.23 0.34 -4.51 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.62 16 20 C -0.55 -30.94 9.50 67.95 0.65 -30.29 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.74 5.49 84.86 0.47 1.21 16 23 N -0.91 -55.77 13.22 21.65 0.29 -55.49 16 24 Si 1.00 43.25 29.55 68.60 2.03 45.27 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.82 8.07 -2.39 -0.02 0.81 16 30 H 0.07 1.13 6.44 -2.38 -0.02 1.12 16 31 H 0.13 0.80 8.07 -2.39 -0.02 0.79 16 32 H 0.08 1.52 7.42 -2.39 -0.02 1.50 16 33 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.42 1.15 8.47 -92.70 -0.79 0.37 16 36 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 37 H 0.06 0.70 8.10 -2.39 -0.02 0.68 16 38 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.10 0.00 8.13 -2.38 -0.02 -0.02 16 40 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.40 7.63 8.45 -92.71 -0.78 6.85 16 43 H 0.11 3.79 8.11 -2.40 -0.02 3.77 16 44 H 0.10 3.73 7.40 -2.39 -0.02 3.71 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -95.62 392.06 -0.31 -95.93 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -0.54 Total: 12.44 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 6.39 Total: 11.89 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -6.87 Total: -95.97 kcal Atomic # 8 Polarization: -59.80 SS G_CDS: -0.15 Total: -59.95 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.62 kcal Total: -95.62 -0.31 -95.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704216850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.506 kcal (2) G-P(sol) polarization free energy of solvation -95.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds