Wall clock time and date at job start Wed Apr 1 2020 01:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 119.99878 * 2 1 4 4 C 1.52997 * 109.47083 * 89.99745 * 3 2 1 5 5 N 1.46500 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00070 * 179.72722 * 6 5 4 9 9 S 1.81000 * 109.47208 * 180.27837 * 8 6 5 10 10 C 1.76201 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99678 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00286 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00332 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99610 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47478 * 90.00087 * 14 12 10 16 16 H 1.48505 * 109.47196 * 209.99889 * 14 12 10 17 17 H 1.48504 * 109.47524 * 329.99683 * 14 12 10 18 18 C 1.34771 * 119.99892 * 180.02562 * 2 1 3 19 19 O 1.21283 * 119.99916 * 185.35798 * 18 2 1 20 20 C 1.50704 * 120.00135 * 5.35587 * 18 2 1 21 21 H 1.09004 * 109.59978 * 33.88381 * 20 18 2 22 22 C 1.53344 * 109.60250 * 154.36990 * 20 18 2 23 23 C 1.53079 * 108.41402 * 187.30355 * 22 20 18 24 24 C 1.50171 * 109.88822 * 311.08733 * 23 22 20 25 25 O 1.21287 * 118.24856 * 197.60397 * 24 23 22 26 26 N 1.33358 * 123.50859 * 17.58295 * 24 23 22 27 27 C 1.45755 * 124.10707 * 357.79693 * 26 24 23 28 28 H 1.08997 * 109.47088 * 87.84986 * 1 2 3 29 29 H 1.09001 * 109.46718 * 207.85094 * 1 2 3 30 30 H 1.08995 * 109.47004 * 327.85282 * 1 2 3 31 31 H 1.09002 * 109.47013 * 329.99815 * 3 2 1 32 32 H 1.08999 * 109.47021 * 209.99894 * 3 2 1 33 33 H 1.09002 * 109.47138 * 60.00147 * 4 3 2 34 34 H 1.08999 * 109.47314 * 299.99970 * 4 3 2 35 35 H 0.96998 * 120.00210 * 0.02562 * 5 4 3 36 36 H 1.09003 * 109.47170 * 300.27745 * 8 6 5 37 37 H 1.08996 * 109.47127 * 60.27972 * 8 6 5 38 38 H 0.97002 * 120.00132 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.67463 * 307.02472 * 22 20 18 40 40 H 1.09000 * 109.67274 * 67.55556 * 22 20 18 41 41 H 1.09002 * 109.40496 * 190.96187 * 23 22 20 42 42 H 1.08995 * 109.40300 * 71.21841 * 23 22 20 43 43 H 0.96999 * 117.94523 * 177.77603 * 26 24 23 44 44 H 1.08999 * 109.29715 * 258.74276 * 27 26 24 45 45 H 1.08993 * 109.13338 * 139.25814 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1855 2.9789 1.4424 6 6 3.5229 3.5622 2.6096 7 8 3.2202 3.0368 3.6600 8 6 4.2823 4.8639 2.6096 9 16 4.5904 5.3827 4.3161 10 6 5.4662 6.8839 4.0262 11 1 5.6545 7.2124 3.0147 12 6 5.9131 7.6447 5.0976 13 7 6.5669 8.7665 4.8810 14 14 5.5866 7.0768 6.8469 15 1 6.7094 6.2207 7.3072 16 1 5.4685 8.2593 7.7374 17 1 4.3223 6.2988 6.8871 18 6 2.1389 -1.1672 -0.0005 19 8 3.3478 -1.1695 0.0976 20 6 1.3903 -2.4694 -0.1229 21 1 0.5183 -2.3312 -0.7622 22 6 2.3108 -3.5372 -0.7263 23 6 1.4779 -4.7902 -1.0084 24 6 0.6621 -5.1444 0.2016 25 8 0.2027 -6.2644 0.2765 26 7 0.4160 -4.2935 1.1985 27 6 0.9420 -2.9356 1.2627 28 1 -0.3633 0.0386 -1.0269 29 1 -0.3633 -0.9087 0.4801 30 1 -0.3633 0.8701 0.5468 31 1 1.6084 2.0284 -0.5139 32 1 3.1500 1.1384 -0.5138 33 1 3.0416 0.9508 1.9563 34 1 1.5001 1.8408 1.9563 35 1 3.4280 3.3989 0.6024 36 1 5.2330 4.7300 2.0934 37 1 3.6955 5.6269 2.0983 38 1 6.8795 9.2980 5.6298 39 1 2.7425 -3.1666 -1.6561 40 1 3.1069 -3.7763 -0.0213 41 1 2.1422 -5.6192 -1.2525 42 1 0.8127 -4.6008 -1.8508 43 1 -0.1487 -4.5971 1.9264 44 1 1.7925 -2.9106 1.9439 45 1 0.1640 -2.2683 1.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721062293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:22 Heat of formation + Delta-G solvation = -110.296934 kcal Electronic energy + Delta-G solvation = -26824.536899 eV Core-core repulsion = 22775.141099 eV Total energy + Delta-G solvation = -4049.395800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35550 -40.09012 -39.25377 -36.95287 -36.42798 -34.60903 -33.61781 -32.45632 -31.34903 -30.17804 -28.52390 -27.11431 -25.64178 -25.32367 -24.25594 -22.81965 -20.81519 -20.29048 -19.28706 -18.18916 -17.92589 -17.48306 -16.86702 -16.79868 -16.36991 -16.06649 -15.72032 -15.48390 -15.33674 -14.96991 -14.78434 -14.51107 -14.30350 -14.07050 -13.99646 -13.73402 -13.38680 -13.32546 -12.94365 -12.81652 -12.57421 -12.50832 -12.39148 -12.25916 -11.83510 -11.63225 -11.52844 -11.28615 -11.02283 -10.64482 -10.36292 -10.29120 -9.88344 -9.68917 -9.62884 -9.28990 -9.08236 -9.00668 -8.52451 -6.94040 -6.30565 -4.02582 1.92657 2.12008 2.21799 2.70688 2.80077 2.92485 3.30865 3.34743 3.48918 3.63379 3.74399 3.88495 3.94741 4.09685 4.31542 4.35401 4.44861 4.51200 4.58572 4.63718 4.70239 4.72162 4.78565 4.86124 5.00768 5.04916 5.08546 5.11995 5.21162 5.27480 5.30687 5.50691 5.54618 5.64029 5.74000 5.90853 5.98388 6.18419 6.42859 6.69298 6.74309 7.51226 7.56619 7.66510 7.92412 8.39824 8.42842 9.15589 10.78599 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.001707 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.083052 B =16396.769213 C =16805.840494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.613 5.613 3 C 0.105 3.895 4 C 0.108 3.892 5 N -0.735 5.735 6 C 0.532 3.468 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.236 1.236 18 C 0.522 3.478 19 O -0.519 6.519 20 C -0.124 4.124 21 H 0.105 0.895 22 C -0.106 4.106 23 C -0.135 4.135 24 C 0.519 3.481 25 O -0.556 6.556 26 N -0.718 5.718 27 C 0.120 3.880 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.400 0.600 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.271 0.729 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.404 0.596 44 H 0.079 0.921 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.701 -22.506 -16.337 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.347 5.347 3 C -0.018 4.018 4 C -0.018 4.018 5 N -0.391 5.391 6 C 0.318 3.682 7 O -0.393 6.393 8 C -0.274 4.274 9 S 0.084 5.916 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.160 1.160 18 C 0.309 3.691 19 O -0.394 6.394 20 C -0.146 4.146 21 H 0.123 0.877 22 C -0.144 4.144 23 C -0.175 4.175 24 C 0.306 3.694 25 O -0.434 6.434 26 N -0.371 5.371 27 C -0.005 4.005 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.234 0.766 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.240 0.760 44 H 0.097 0.903 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.560 -23.735 -14.604 31.917 hybrid contribution 0.164 1.000 -0.549 1.153 sum -15.395 -22.734 -15.153 31.360 Atomic orbital electron populations 1.21988 0.78837 1.03923 1.02498 1.47736 1.07270 1.05675 1.73988 1.21628 0.98588 0.84861 0.96719 1.21564 0.97203 0.86385 0.96628 1.45791 1.60110 1.24118 1.09033 1.20287 0.78763 0.85944 0.83194 1.90705 1.53257 1.64277 1.31020 1.23275 1.02652 0.96337 1.05180 1.84801 1.74370 1.29471 1.02926 1.22313 1.40815 1.06156 0.97666 0.89359 1.24710 0.93402 0.93873 0.99305 1.69936 1.36048 1.13220 1.32431 0.86736 0.81550 0.79448 0.84115 1.19189 1.19930 1.15952 1.20310 0.87854 0.84701 0.76252 1.90780 1.13961 1.86910 1.47706 1.21656 1.00550 0.93710 0.98691 0.87735 1.21541 0.97457 0.92532 1.02865 1.21685 0.99560 1.00004 0.96216 1.20251 0.80352 0.84354 0.84408 1.90789 1.52336 1.20766 1.79495 1.45417 1.52914 1.13940 1.24808 1.21306 1.00281 0.83119 0.95837 0.91914 0.90677 0.90182 0.89481 0.88968 0.91109 0.91554 0.76584 0.88380 0.88384 0.91928 0.89666 0.89672 0.87416 0.87916 0.76004 0.90316 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.17 9.84 59.85 0.59 0.76 16 2 N -0.61 -3.47 2.87 -181.57 -0.52 -4.00 16 3 C 0.11 0.70 5.49 -4.04 -0.02 0.68 16 4 C 0.11 1.10 6.00 -4.04 -0.02 1.07 16 5 N -0.74 -8.64 5.56 -60.29 -0.33 -8.98 16 6 C 0.53 9.16 7.85 -10.98 -0.09 9.07 16 7 O -0.52 -11.03 15.86 5.55 0.09 -10.94 16 8 C -0.12 -2.33 6.16 36.01 0.22 -2.10 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 11 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 12 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 13 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 14 Si 0.86 21.67 27.74 -169.99 -4.71 16.95 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 18 C 0.52 3.79 6.75 -10.99 -0.07 3.71 16 19 O -0.52 -5.97 15.90 5.55 0.09 -5.88 16 20 C -0.12 -0.54 1.73 -91.64 -0.16 -0.70 16 21 H 0.10 0.24 7.06 -51.93 -0.37 -0.12 16 22 C -0.11 -0.53 4.75 -26.51 -0.13 -0.65 16 23 C -0.13 -0.65 6.03 -28.10 -0.17 -0.82 16 24 C 0.52 3.92 7.71 -11.87 -0.09 3.83 16 25 O -0.56 -6.66 17.78 5.55 0.10 -6.56 16 26 N -0.72 -3.79 5.45 -61.39 -0.33 -4.13 16 27 C 0.12 0.49 6.30 -4.49 -0.03 0.46 16 28 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.07 0.08 5.02 -51.93 -0.26 -0.18 16 30 H 0.08 0.18 8.09 -51.93 -0.42 -0.24 16 31 H 0.09 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.09 0.72 7.50 -51.93 -0.39 0.33 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.40 3.41 8.47 -40.82 -0.35 3.06 16 36 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 37 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.27 7.54 8.31 -40.82 -0.34 7.21 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.55 8.09 -51.93 -0.42 0.13 16 41 H 0.11 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.40 1.86 8.80 -40.82 -0.36 1.50 16 44 H 0.08 0.42 8.11 -51.93 -0.42 0.00 16 45 H 0.09 0.19 6.51 -51.93 -0.34 -0.15 16 LS Contribution 385.97 15.07 5.82 5.82 Total: -1.00 -39.48 385.97 -7.49 -46.96 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -6.70 Total: -1.49 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 0.24 Total: 3.40 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.42 Total: -42.70 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: 0.28 Total: -23.38 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.95 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -39.48 -7.49 -46.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721062293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.334 kcal (2) G-P(sol) polarization free energy of solvation -39.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds