Wall clock time and date at job start Wed Apr 1 2020 01:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 119.99878 * 2 1 4 4 C 1.52997 * 109.47083 * 89.99745 * 3 2 1 5 5 N 1.46500 * 109.46891 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99877 * 180.02562 * 5 4 3 7 7 O 1.21286 * 120.00142 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00070 * 179.72722 * 6 5 4 9 9 S 1.81000 * 109.47208 * 180.27837 * 8 6 5 10 10 C 1.76201 * 100.00092 * 179.97438 * 9 8 6 11 11 H 1.08001 * 119.99678 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00286 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00332 * 180.02562 * 12 10 9 14 14 Si 1.86799 * 119.99610 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47478 * 90.00087 * 14 12 10 16 16 H 1.48505 * 109.47196 * 209.99889 * 14 12 10 17 17 H 1.48504 * 109.47524 * 329.99683 * 14 12 10 18 18 C 1.34771 * 119.99892 * 180.02562 * 2 1 3 19 19 O 1.21283 * 119.99916 * 185.35798 * 18 2 1 20 20 C 1.50704 * 120.00135 * 5.35587 * 18 2 1 21 21 H 1.09004 * 109.59978 * 33.88381 * 20 18 2 22 22 C 1.53344 * 109.60250 * 154.36990 * 20 18 2 23 23 C 1.53079 * 108.41402 * 187.30355 * 22 20 18 24 24 C 1.50171 * 109.88822 * 311.08733 * 23 22 20 25 25 O 1.21287 * 118.24856 * 197.60397 * 24 23 22 26 26 N 1.33358 * 123.50859 * 17.58295 * 24 23 22 27 27 C 1.45755 * 124.10707 * 357.79693 * 26 24 23 28 28 H 1.08997 * 109.47088 * 87.84986 * 1 2 3 29 29 H 1.09001 * 109.46718 * 207.85094 * 1 2 3 30 30 H 1.08995 * 109.47004 * 327.85282 * 1 2 3 31 31 H 1.09002 * 109.47013 * 329.99815 * 3 2 1 32 32 H 1.08999 * 109.47021 * 209.99894 * 3 2 1 33 33 H 1.09002 * 109.47138 * 60.00147 * 4 3 2 34 34 H 1.08999 * 109.47314 * 299.99970 * 4 3 2 35 35 H 0.96998 * 120.00210 * 0.02562 * 5 4 3 36 36 H 1.09003 * 109.47170 * 300.27745 * 8 6 5 37 37 H 1.08996 * 109.47127 * 60.27972 * 8 6 5 38 38 H 0.97002 * 120.00132 * 180.02562 * 13 12 10 39 39 H 1.08999 * 109.67463 * 307.02472 * 22 20 18 40 40 H 1.09000 * 109.67274 * 67.55556 * 22 20 18 41 41 H 1.09002 * 109.40496 * 190.96187 * 23 22 20 42 42 H 1.08995 * 109.40300 * 71.21841 * 23 22 20 43 43 H 0.96999 * 117.94523 * 177.77603 * 26 24 23 44 44 H 1.08999 * 109.29715 * 258.74276 * 27 26 24 45 45 H 1.08993 * 109.13338 * 139.25814 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1855 2.9789 1.4424 6 6 3.5229 3.5622 2.6096 7 8 3.2202 3.0368 3.6600 8 6 4.2823 4.8639 2.6096 9 16 4.5904 5.3827 4.3161 10 6 5.4662 6.8839 4.0262 11 1 5.6545 7.2124 3.0147 12 6 5.9131 7.6447 5.0976 13 7 6.5669 8.7665 4.8810 14 14 5.5866 7.0768 6.8469 15 1 6.7094 6.2207 7.3072 16 1 5.4685 8.2593 7.7374 17 1 4.3223 6.2988 6.8871 18 6 2.1389 -1.1672 -0.0005 19 8 3.3478 -1.1695 0.0976 20 6 1.3903 -2.4694 -0.1229 21 1 0.5183 -2.3312 -0.7622 22 6 2.3108 -3.5372 -0.7263 23 6 1.4779 -4.7902 -1.0084 24 6 0.6621 -5.1444 0.2016 25 8 0.2027 -6.2644 0.2765 26 7 0.4160 -4.2935 1.1985 27 6 0.9420 -2.9356 1.2627 28 1 -0.3633 0.0386 -1.0269 29 1 -0.3633 -0.9087 0.4801 30 1 -0.3633 0.8701 0.5468 31 1 1.6084 2.0284 -0.5139 32 1 3.1500 1.1384 -0.5138 33 1 3.0416 0.9508 1.9563 34 1 1.5001 1.8408 1.9563 35 1 3.4280 3.3989 0.6024 36 1 5.2330 4.7300 2.0934 37 1 3.6955 5.6269 2.0983 38 1 6.8795 9.2980 5.6298 39 1 2.7425 -3.1666 -1.6561 40 1 3.1069 -3.7763 -0.0213 41 1 2.1422 -5.6192 -1.2525 42 1 0.8127 -4.6008 -1.8508 43 1 -0.1487 -4.5971 1.9264 44 1 1.7925 -2.9106 1.9439 45 1 0.1640 -2.2683 1.6331 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721062293.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:21 Heat of formation + Delta-G solvation = -142.478615 kcal Electronic energy + Delta-G solvation = -26825.932401 eV Core-core repulsion = 22775.141099 eV Total energy + Delta-G solvation = -4050.791303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.86724 -40.82082 -40.43229 -37.56443 -37.08266 -35.61373 -34.67094 -34.06618 -32.19951 -31.08421 -29.40383 -27.86323 -27.50879 -25.75123 -24.91494 -23.42564 -21.95874 -20.94671 -19.92860 -19.69232 -18.66484 -18.07367 -17.86975 -17.61781 -17.23736 -17.07753 -16.82905 -16.75899 -16.27386 -15.97680 -15.62271 -15.35660 -15.06986 -15.01829 -14.90177 -14.70009 -14.51168 -14.41578 -13.82198 -13.66492 -13.34844 -13.20106 -13.07159 -13.06909 -13.01912 -12.88990 -12.64377 -12.36279 -12.26043 -11.97342 -11.87036 -11.17337 -11.14023 -10.90677 -10.88390 -10.53672 -10.20078 -10.19375 -9.79711 -8.99838 -8.51527 -6.22377 0.97649 1.31469 1.37977 1.46432 1.52579 1.54573 1.56849 1.78278 2.23551 2.25399 2.41360 2.73215 2.86805 3.31338 3.51083 3.58329 3.67407 3.80864 3.93014 3.94415 4.14011 4.21106 4.21682 4.24451 4.37124 4.41161 4.47600 4.49741 4.64926 4.72441 4.76141 4.84867 4.91408 4.92196 5.04126 5.14447 5.27688 5.48054 5.70792 5.74013 6.11634 6.21377 6.27974 6.43076 6.93794 7.04781 7.13202 7.17054 8.60709 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.026837 B = 0.001707 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.083052 B =16396.769213 C =16805.840494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.609 5.609 3 C 0.113 3.887 4 C 0.111 3.889 5 N -0.709 5.709 6 C 0.536 3.464 7 O -0.564 6.564 8 C -0.111 4.111 9 S -0.179 6.179 10 C -0.529 4.529 11 H 0.064 0.936 12 C 0.046 3.954 13 N -0.916 5.916 14 Si 0.914 3.086 15 H -0.264 1.264 16 H -0.259 1.259 17 H -0.236 1.236 18 C 0.520 3.480 19 O -0.570 6.570 20 C -0.117 4.117 21 H 0.136 0.864 22 C -0.102 4.102 23 C -0.126 4.126 24 C 0.515 3.485 25 O -0.607 6.607 26 N -0.708 5.708 27 C 0.120 3.880 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.040 0.960 34 H 0.070 0.930 35 H 0.420 0.580 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.277 0.723 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.407 0.593 44 H 0.063 0.937 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.804 -22.866 -17.680 33.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.341 5.341 3 C -0.011 4.011 4 C -0.014 4.014 5 N -0.364 5.364 6 C 0.321 3.679 7 O -0.443 6.443 8 C -0.262 4.262 9 S 0.048 5.952 10 C -0.676 4.676 11 H 0.082 0.918 12 C -0.160 4.160 13 N -0.554 5.554 14 Si 0.736 3.264 15 H -0.189 1.189 16 H -0.183 1.183 17 H -0.160 1.160 18 C 0.308 3.692 19 O -0.448 6.448 20 C -0.138 4.138 21 H 0.154 0.846 22 C -0.140 4.140 23 C -0.166 4.166 24 C 0.304 3.696 25 O -0.489 6.489 26 N -0.359 5.359 27 C -0.004 4.004 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.257 0.743 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.144 0.856 43 H 0.244 0.756 44 H 0.082 0.918 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -17.697 -24.056 -16.000 33.880 hybrid contribution 0.795 1.100 -0.270 1.384 sum -16.902 -22.955 -16.270 32.823 Atomic orbital electron populations 1.22285 0.76365 1.05066 1.04250 1.47849 1.08731 1.04775 1.72750 1.21557 0.99240 0.86229 0.94092 1.21648 0.96268 0.84420 0.99041 1.45524 1.58499 1.24096 1.08237 1.19974 0.78579 0.85357 0.83984 1.90694 1.55369 1.65287 1.32904 1.23268 1.04233 0.97945 1.00720 1.84738 1.73881 1.27763 1.08828 1.22460 1.40931 1.07565 0.96667 0.91818 1.25551 0.93282 0.94013 1.03110 1.70013 1.37165 1.14349 1.33878 0.85879 0.81312 0.79456 0.79788 1.18904 1.18296 1.16013 1.20763 0.87361 0.85848 0.75247 1.90765 1.16265 1.87654 1.50130 1.21651 1.01022 0.91907 0.99239 0.84598 1.21472 0.97101 0.92836 1.02615 1.21667 0.99495 0.99765 0.95666 1.20733 0.79910 0.83747 0.85258 1.90768 1.54590 1.22843 1.80706 1.45395 1.52088 1.14137 1.24300 1.21383 1.00638 0.82781 0.95614 0.89775 0.89176 0.89586 0.86080 0.89997 0.94164 0.91165 0.74292 0.86912 0.86277 0.91380 0.89156 0.91816 0.87438 0.85566 0.75619 0.91846 0.86898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.03 9.84 127.77 1.26 1.29 16 2 N -0.61 -5.13 2.87 -846.75 -2.43 -7.56 16 3 C 0.11 1.19 5.49 86.38 0.47 1.66 16 4 C 0.11 2.07 6.00 86.38 0.52 2.59 16 5 N -0.71 -15.08 5.56 -463.06 -2.57 -17.65 16 6 C 0.54 17.67 7.85 87.66 0.69 18.36 16 7 O -0.56 -23.73 15.86 -3.05 -0.05 -23.78 16 8 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 9 S -0.18 -8.92 18.55 -56.49 -1.05 -9.97 16 10 C -0.53 -30.47 10.04 67.95 0.68 -29.79 16 11 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 12 C 0.05 2.68 5.50 84.86 0.47 3.14 16 13 N -0.92 -55.40 13.97 21.65 0.30 -55.10 16 14 Si 0.91 44.77 27.74 68.60 1.90 46.67 16 15 H -0.26 -12.72 7.11 99.48 0.71 -12.01 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.24 -11.52 6.74 99.48 0.67 -10.85 16 18 C 0.52 6.64 6.75 87.66 0.59 7.23 16 19 O -0.57 -13.00 15.90 -3.04 -0.05 -13.05 16 20 C -0.12 -0.75 1.73 -11.45 -0.02 -0.77 16 21 H 0.14 0.06 7.06 -2.38 -0.02 0.04 16 22 C -0.10 -0.89 4.75 30.74 0.15 -0.75 16 23 C -0.13 -1.03 6.03 29.71 0.18 -0.85 16 24 C 0.51 7.35 7.71 87.71 0.68 8.03 16 25 O -0.61 -14.59 17.78 -3.05 -0.05 -14.64 16 26 N -0.71 -6.57 5.45 -467.33 -2.55 -9.11 16 27 C 0.12 0.76 6.30 86.49 0.54 1.31 16 28 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 29 H 0.09 -0.21 5.02 -2.39 -0.01 -0.22 16 30 H 0.09 0.02 8.09 -2.39 -0.02 0.00 16 31 H 0.12 0.51 8.07 -2.39 -0.02 0.49 16 32 H 0.08 1.10 7.50 -2.39 -0.02 1.08 16 33 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.42 5.82 8.47 -92.71 -0.79 5.04 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.12 3.83 8.14 -2.40 -0.02 3.81 16 38 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.06 0.84 8.09 -2.39 -0.02 0.82 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.13 0.46 8.14 -2.39 -0.02 0.45 16 43 H 0.41 3.32 8.80 -92.71 -0.82 2.50 16 44 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 45 H 0.11 0.13 6.51 -2.39 -0.02 0.11 16 Total: -1.00 -89.14 385.97 -0.51 -89.65 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -0.61 Total: 6.66 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: 6.64 Total: 7.88 kcal Atomic # 7 Polarization: -82.18 SS G_CDS: -7.25 Total: -89.43 kcal Atomic # 8 Polarization: -51.32 SS G_CDS: -0.15 Total: -51.47 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.92 SS G_CDS: -1.05 Total: -9.97 kcal Total: -89.14 -0.51 -89.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721062293.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.830 kcal (2) G-P(sol) polarization free energy of solvation -89.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds