Wall clock time and date at job start Wed Apr 1 2020 02:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00333 * 2 1 4 4 O 1.21281 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00274 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.47040 * 179.97438 * 5 3 2 7 7 O 1.21281 * 120.00106 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99879 * 179.97438 * 6 5 3 9 9 C 1.46499 * 120.00079 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47178 * 185.00262 * 9 8 6 11 11 H 1.08996 * 109.99977 * 306.33445 * 10 9 8 12 12 C 1.54321 * 109.77243 * 67.48806 * 10 9 8 13 13 C 1.55153 * 102.86082 * 141.88098 * 12 10 9 14 14 C 1.54901 * 101.58645 * 324.30487 * 13 12 10 15 15 N 1.47016 * 109.88245 * 185.23678 * 10 9 8 16 16 C 1.34772 * 125.65091 * 61.67909 * 15 10 9 17 17 O 1.21284 * 119.99868 * 354.79599 * 16 15 10 18 18 C 1.50701 * 120.00609 * 174.79144 * 16 15 10 19 19 S 1.80993 * 109.47522 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00188 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00048 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00266 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00320 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99998 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47788 * 89.99430 * 24 22 20 26 26 H 1.48511 * 109.46828 * 329.99330 * 24 22 20 27 27 H 1.48503 * 109.47220 * 209.99722 * 24 22 20 28 28 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47243 * 300.00020 * 1 2 3 30 30 H 1.08994 * 109.47098 * 60.00068 * 1 2 3 31 31 H 0.97000 * 119.99558 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47041 * 60.00199 * 5 3 2 33 33 H 1.08994 * 109.47358 * 300.00115 * 5 3 2 34 34 H 0.97005 * 119.99649 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.46492 * 65.00418 * 9 8 6 36 36 H 1.08996 * 109.47344 * 305.00731 * 9 8 6 37 37 H 1.09001 * 110.92037 * 23.47120 * 12 10 9 38 38 H 1.08997 * 110.74151 * 260.21434 * 12 10 9 39 39 H 1.09006 * 111.00615 * 206.22614 * 13 12 10 40 40 H 1.09003 * 110.99936 * 82.38227 * 13 12 10 41 41 H 1.08993 * 110.36768 * 278.17099 * 14 13 12 42 42 H 1.09002 * 110.46006 * 155.89339 * 14 13 12 43 43 H 1.09007 * 109.46941 * 60.00194 * 18 16 15 44 44 H 1.09002 * 109.47262 * 300.00750 * 18 16 15 45 45 H 0.96997 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5880 -0.0002 7 8 3.3602 3.5098 -0.0006 8 7 5.4734 2.8342 0.0007 9 6 5.9617 4.2154 0.0005 10 6 7.4866 4.2172 -0.1242 11 1 7.9247 3.5873 0.6501 12 6 7.8969 3.7005 -1.5192 13 6 9.1073 4.6020 -1.8791 14 6 8.6858 5.9539 -1.2514 15 7 7.9969 5.5903 0.0003 16 6 7.8622 6.3834 1.0817 17 8 7.1978 6.0130 2.0263 18 6 8.5372 7.7303 1.1172 19 16 8.1698 8.5480 2.6895 20 6 9.0559 10.0544 2.4654 21 1 9.6029 10.2282 1.5504 22 6 9.0502 11.0182 3.4641 23 7 9.7117 12.1438 3.2965 24 14 8.1036 10.7181 5.0463 25 1 8.9903 10.0546 6.0355 26 1 6.9348 9.8458 4.7659 27 1 7.6329 12.0152 5.5952 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 4.0096 0.6531 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 6.1037 2.0969 0.0014 35 1 5.6727 4.7030 0.9316 36 1 5.5277 4.7542 -0.8417 37 1 7.0884 3.8355 -2.2376 38 1 8.1967 2.6537 -1.4703 39 1 9.2204 4.6913 -2.9596 40 1 10.0230 4.2274 -1.4217 41 1 8.0067 6.4861 -1.9174 42 1 9.5629 6.5649 -1.0380 43 1 8.1692 8.3429 0.2940 44 1 9.6148 7.5994 1.0192 45 1 9.7080 12.8171 3.9946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721567374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:23 Heat of formation + Delta-G solvation = -100.656983 kcal Electronic energy + Delta-G solvation = -27111.220979 eV Core-core repulsion = 23062.243198 eV Total energy + Delta-G solvation = -4048.977781 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.62839 -40.10017 -38.79187 -37.38048 -35.04348 -34.62788 -32.42834 -32.02000 -31.61668 -30.15322 -28.68408 -26.91241 -25.61804 -25.34243 -22.91600 -21.61856 -21.15106 -20.56719 -19.16601 -17.78091 -17.74034 -17.32890 -17.02206 -16.40219 -16.32607 -15.77404 -15.27953 -15.13720 -15.02017 -14.91685 -14.46964 -14.11236 -13.93175 -13.73770 -13.62145 -13.37305 -13.20251 -13.02174 -12.79368 -12.65984 -12.64835 -12.35931 -12.17304 -11.84412 -11.54340 -11.24905 -11.19800 -11.07214 -10.98867 -10.59957 -10.41323 -9.84601 -9.67508 -9.53848 -9.47929 -9.11867 -8.98956 -8.68504 -8.48293 -6.90727 -6.27626 -3.99398 2.32320 2.41882 2.57908 2.70948 2.89294 3.08762 3.34114 3.37087 3.53427 3.61991 4.17132 4.18126 4.27126 4.35091 4.49127 4.57111 4.71491 4.75251 4.78106 4.84474 4.93816 4.98917 5.11054 5.11530 5.13737 5.21509 5.39513 5.42969 5.46489 5.50707 5.56671 5.74100 5.81900 5.86472 5.96318 6.00247 6.01613 6.18091 6.40205 7.05976 7.29399 7.51065 7.92374 7.95342 8.15751 8.39158 8.42536 9.18640 10.81494 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.002264 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.993886 B =12361.884416 C =14093.009398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.742 5.742 3 C 0.508 3.492 4 O -0.488 6.488 5 C -0.164 4.164 6 C 0.509 3.491 7 O -0.490 6.490 8 N -0.729 5.729 9 C 0.108 3.892 10 C 0.131 3.869 11 H 0.080 0.920 12 C -0.129 4.129 13 C -0.132 4.132 14 C 0.098 3.902 15 N -0.619 5.619 16 C 0.547 3.453 17 O -0.511 6.511 18 C -0.118 4.118 19 S -0.141 6.141 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.235 1.235 27 H -0.274 1.274 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.400 0.600 32 H 0.121 0.879 33 H 0.122 0.878 34 H 0.396 0.604 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 -30.519 -13.738 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.397 5.397 3 C 0.292 3.708 4 O -0.360 6.360 5 C -0.207 4.207 6 C 0.292 3.708 7 O -0.362 6.362 8 N -0.383 5.383 9 C -0.017 4.017 10 C 0.027 3.973 11 H 0.098 0.902 12 C -0.167 4.167 13 C -0.170 4.170 14 C -0.025 4.025 15 N -0.357 5.357 16 C 0.336 3.664 17 O -0.385 6.385 18 C -0.268 4.268 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.159 1.159 27 H -0.199 1.199 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.233 0.767 32 H 0.139 0.861 33 H 0.140 0.860 34 H 0.230 0.770 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.582 -29.286 -12.176 32.857 hybrid contribution 1.186 -0.295 -0.418 1.292 sum -7.395 -29.581 -12.594 32.990 Atomic orbital electron populations 1.21512 0.79426 1.02070 1.02517 1.45785 1.07803 1.08413 1.77656 1.20056 0.89260 0.84041 0.77491 1.90904 1.69361 1.30415 1.45271 1.21572 0.94852 0.97678 1.06587 1.19899 0.82386 0.90591 0.77922 1.90907 1.54321 1.45326 1.45605 1.45803 1.06711 1.08794 1.77030 1.21782 0.93039 0.82580 1.04250 1.21628 0.93022 0.84687 0.97999 0.90187 1.22763 0.98698 0.99872 0.95376 1.22775 0.98185 0.94681 1.01368 1.22368 0.97318 0.97415 0.85399 1.48453 1.57477 1.14314 1.15459 1.20058 0.80288 0.85475 0.80577 1.90714 1.39021 1.73807 1.34935 1.23261 1.03339 0.95018 1.05208 1.84826 1.69042 1.19297 1.18294 1.22301 1.35787 1.00956 1.07804 0.89382 1.24704 0.94409 0.93889 0.98268 1.69935 1.40419 1.06825 1.34476 0.86744 0.82440 0.79137 0.83605 1.19223 1.15865 1.19917 0.90693 0.92195 0.92236 0.76727 0.86122 0.86036 0.77012 0.89485 0.91113 0.90165 0.89999 0.89674 0.90351 0.91087 0.89868 0.88484 0.88501 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -4.31 5.71 -67.08 -0.38 -4.69 16 3 C 0.51 5.04 7.82 -10.99 -0.09 4.95 16 4 O -0.49 -7.94 14.18 -18.96 -0.27 -8.20 16 5 C -0.16 -1.03 6.19 -29.03 -0.18 -1.21 16 6 C 0.51 5.91 7.82 -10.98 -0.09 5.82 16 7 O -0.49 -8.85 14.18 -18.96 -0.27 -9.12 16 8 N -0.73 -6.68 5.37 -60.30 -0.32 -7.00 16 9 C 0.11 1.35 5.08 -4.04 -0.02 1.33 16 10 C 0.13 1.36 2.95 -66.96 -0.20 1.16 16 11 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 12 C -0.13 -0.83 6.23 -24.90 -0.16 -0.98 16 13 C -0.13 -0.86 7.08 -24.59 -0.17 -1.03 16 14 C 0.10 0.95 6.74 -2.53 -0.02 0.93 16 15 N -0.62 -8.20 3.07 -163.03 -0.50 -8.70 16 16 C 0.55 9.99 7.69 -10.99 -0.08 9.90 16 17 O -0.51 -11.17 14.65 5.55 0.08 -11.09 16 18 C -0.12 -2.33 5.09 36.01 0.18 -2.14 16 19 S -0.14 -3.64 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.15 10.04 30.94 0.31 -14.83 16 21 H 0.09 2.66 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 23 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 24 Si 0.86 22.15 27.74 -169.99 -4.71 17.43 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.23 -6.11 6.74 56.52 0.38 -5.73 16 27 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 28 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 0.75 8.83 -40.82 -0.36 0.39 16 32 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.12 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.99 8.42 -40.82 -0.34 1.65 16 35 H 0.09 1.50 6.55 -51.93 -0.34 1.16 16 36 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 37 H 0.08 0.52 7.77 -51.93 -0.40 0.12 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.79 7.47 -51.93 -0.39 0.41 16 43 H 0.10 1.81 8.14 -51.91 -0.42 1.39 16 44 H 0.10 1.77 7.95 -51.91 -0.41 1.35 16 45 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -42.56 388.17 -8.60 -51.16 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -6.89 Total: -1.82 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 0.04 Total: 7.80 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: -0.43 Total: -46.36 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -0.46 Total: -28.42 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.71 Total: 17.43 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -42.56 -8.60 -51.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721567374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.501 kcal (2) G-P(sol) polarization free energy of solvation -42.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds