Wall clock time and date at job start Wed Apr 1 2020 02:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34774 * 120.00333 * 2 1 4 4 O 1.21281 * 119.99767 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00274 * 179.97438 * 3 2 1 6 6 C 1.50704 * 109.47040 * 179.97438 * 5 3 2 7 7 O 1.21281 * 120.00106 * 0.02562 * 6 5 3 8 8 N 1.34777 * 119.99879 * 179.97438 * 6 5 3 9 9 C 1.46499 * 120.00079 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47178 * 185.00262 * 9 8 6 11 11 H 1.08996 * 109.99977 * 306.33445 * 10 9 8 12 12 C 1.54321 * 109.77243 * 67.48806 * 10 9 8 13 13 C 1.55153 * 102.86082 * 141.88098 * 12 10 9 14 14 C 1.54901 * 101.58645 * 324.30487 * 13 12 10 15 15 N 1.47016 * 109.88245 * 185.23678 * 10 9 8 16 16 C 1.34772 * 125.65091 * 61.67909 * 15 10 9 17 17 O 1.21284 * 119.99868 * 354.79599 * 16 15 10 18 18 C 1.50701 * 120.00609 * 174.79144 * 16 15 10 19 19 S 1.80993 * 109.47522 * 180.02562 * 18 16 15 20 20 C 1.76197 * 100.00188 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00048 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00266 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00320 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99998 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47788 * 89.99430 * 24 22 20 26 26 H 1.48511 * 109.46828 * 329.99330 * 24 22 20 27 27 H 1.48503 * 109.47220 * 209.99722 * 24 22 20 28 28 H 1.09002 * 109.47074 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47243 * 300.00020 * 1 2 3 30 30 H 1.08994 * 109.47098 * 60.00068 * 1 2 3 31 31 H 0.97000 * 119.99558 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.47041 * 60.00199 * 5 3 2 33 33 H 1.08994 * 109.47358 * 300.00115 * 5 3 2 34 34 H 0.97005 * 119.99649 * 0.02562 * 8 6 5 35 35 H 1.08998 * 109.46492 * 65.00418 * 9 8 6 36 36 H 1.08996 * 109.47344 * 305.00731 * 9 8 6 37 37 H 1.09001 * 110.92037 * 23.47120 * 12 10 9 38 38 H 1.08997 * 110.74151 * 260.21434 * 12 10 9 39 39 H 1.09006 * 111.00615 * 206.22614 * 13 12 10 40 40 H 1.09003 * 110.99936 * 82.38227 * 13 12 10 41 41 H 1.08993 * 110.36768 * 278.17099 * 14 13 12 42 42 H 1.09002 * 110.46006 * 155.89339 * 14 13 12 43 43 H 1.09007 * 109.46941 * 60.00194 * 18 16 15 44 44 H 1.09002 * 109.47262 * 300.00750 * 18 16 15 45 45 H 0.96997 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5880 -0.0002 7 8 3.3602 3.5098 -0.0006 8 7 5.4734 2.8342 0.0007 9 6 5.9617 4.2154 0.0005 10 6 7.4866 4.2172 -0.1242 11 1 7.9247 3.5873 0.6501 12 6 7.8969 3.7005 -1.5192 13 6 9.1073 4.6020 -1.8791 14 6 8.6858 5.9539 -1.2514 15 7 7.9969 5.5903 0.0003 16 6 7.8622 6.3834 1.0817 17 8 7.1978 6.0130 2.0263 18 6 8.5372 7.7303 1.1172 19 16 8.1698 8.5480 2.6895 20 6 9.0559 10.0544 2.4654 21 1 9.6029 10.2282 1.5504 22 6 9.0502 11.0182 3.4641 23 7 9.7117 12.1438 3.2965 24 14 8.1036 10.7181 5.0463 25 1 8.9903 10.0546 6.0355 26 1 6.9348 9.8458 4.7659 27 1 7.6329 12.0152 5.5952 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 4.0096 0.6531 -0.8892 33 1 4.0089 0.6535 0.8908 34 1 6.1037 2.0969 0.0014 35 1 5.6727 4.7030 0.9316 36 1 5.5277 4.7542 -0.8417 37 1 7.0884 3.8355 -2.2376 38 1 8.1967 2.6537 -1.4703 39 1 9.2204 4.6913 -2.9596 40 1 10.0230 4.2274 -1.4217 41 1 8.0067 6.4861 -1.9174 42 1 9.5629 6.5649 -1.0380 43 1 8.1692 8.3429 0.2940 44 1 9.6148 7.5994 1.0192 45 1 9.7080 12.8171 3.9946 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721567374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:22 Heat of formation + Delta-G solvation = -135.818323 kcal Electronic energy + Delta-G solvation = -27112.745689 eV Core-core repulsion = 23062.243198 eV Total energy + Delta-G solvation = -4050.502491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56292 -41.08878 -39.71346 -38.54956 -35.90619 -35.44564 -34.70102 -33.09185 -32.35834 -31.06605 -29.94201 -27.87935 -27.50626 -26.16063 -23.92033 -22.38311 -21.92393 -21.36276 -20.45689 -19.56647 -18.46773 -18.34895 -18.08493 -17.42241 -17.13617 -17.05804 -16.59489 -16.43723 -16.20742 -15.95040 -15.77847 -15.42360 -14.92939 -14.90815 -14.51210 -14.45925 -14.17507 -14.09728 -13.96518 -13.63546 -13.58944 -13.37366 -13.06782 -13.06112 -12.98446 -12.81307 -12.69583 -12.11160 -11.98128 -11.89379 -11.62293 -11.26735 -11.19773 -11.03592 -10.57495 -10.56751 -10.11012 -10.09430 -9.80199 -9.03993 -8.54328 -6.25523 0.92375 1.27853 1.40018 1.45552 1.49479 1.62481 1.73125 1.77761 2.12070 2.22455 2.59650 2.67695 2.83747 3.38913 3.52526 3.58824 3.80636 3.83034 4.06404 4.08779 4.15176 4.24174 4.36421 4.38535 4.42143 4.44018 4.51458 4.62109 4.65500 4.77685 4.82988 4.96114 4.96917 5.02053 5.14465 5.28335 5.38069 5.44704 5.47586 5.68198 6.08315 6.30463 6.55820 6.63242 6.90875 7.01820 7.29969 7.43020 8.57952 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013504 B = 0.002264 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.993886 B =12361.884416 C =14093.009398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.721 5.721 3 C 0.496 3.504 4 O -0.565 6.565 5 C -0.147 4.147 6 C 0.499 3.501 7 O -0.565 6.565 8 N -0.706 5.706 9 C 0.117 3.883 10 C 0.129 3.871 11 H 0.087 0.913 12 C -0.116 4.116 13 C -0.119 4.119 14 C 0.082 3.918 15 N -0.612 5.612 16 C 0.546 3.454 17 O -0.557 6.557 18 C -0.102 4.102 19 S -0.179 6.179 20 C -0.528 4.528 21 H 0.064 0.936 22 C 0.048 3.952 23 N -0.914 5.914 24 Si 0.912 3.088 25 H -0.259 1.259 26 H -0.242 1.242 27 H -0.258 1.258 28 H 0.116 0.884 29 H 0.039 0.961 30 H 0.043 0.957 31 H 0.423 0.577 32 H 0.174 0.826 33 H 0.164 0.836 34 H 0.422 0.578 35 H 0.032 0.968 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.323 -34.914 -15.263 38.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.375 5.375 3 C 0.282 3.718 4 O -0.442 6.442 5 C -0.189 4.189 6 C 0.285 3.715 7 O -0.442 6.442 8 N -0.362 5.362 9 C -0.009 4.009 10 C 0.026 3.974 11 H 0.105 0.895 12 C -0.153 4.153 13 C -0.157 4.157 14 C -0.039 4.039 15 N -0.347 5.347 16 C 0.334 3.666 17 O -0.436 6.436 18 C -0.253 4.253 19 S 0.048 5.952 20 C -0.675 4.675 21 H 0.082 0.918 22 C -0.158 4.158 23 N -0.552 5.552 24 Si 0.734 3.266 25 H -0.184 1.184 26 H -0.166 1.166 27 H -0.182 1.182 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.191 0.809 33 H 0.181 0.819 34 H 0.260 0.740 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.125 0.875 44 H 0.132 0.868 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.258 -33.808 -13.758 37.215 hybrid contribution 0.814 0.958 -0.103 1.261 sum -6.445 -32.851 -13.861 36.233 Atomic orbital electron populations 1.21605 0.79464 1.04156 1.00795 1.45647 1.07944 1.08454 1.75498 1.20800 0.90930 0.83841 0.76239 1.90890 1.71038 1.33262 1.49054 1.21631 0.92008 0.94275 1.10937 1.20945 0.82217 0.92273 0.76068 1.90893 1.56252 1.48076 1.48983 1.45563 1.06768 1.08156 1.75712 1.21431 0.94710 0.84074 1.00661 1.21905 0.91106 0.83122 1.01291 0.89468 1.22797 0.98701 1.01812 0.92019 1.22789 0.98272 0.91958 1.02704 1.22760 0.97214 1.00042 0.83931 1.48438 1.56336 1.14956 1.14962 1.19708 0.80042 0.85336 0.81559 1.90699 1.41081 1.74669 1.37111 1.23210 1.04724 0.95848 1.01491 1.84778 1.68928 1.18396 1.23116 1.22421 1.35627 1.02523 1.06943 0.91808 1.25519 0.95273 0.93750 1.01251 1.70004 1.41674 1.07684 1.35821 0.85899 0.81044 0.79517 0.80111 1.18394 1.16613 1.18217 0.86557 0.94226 0.93846 0.73906 0.80879 0.81865 0.74002 0.94921 0.92877 0.89832 0.86070 0.87038 0.89410 0.90572 0.89768 0.87531 0.86769 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 10.70 127.77 1.37 2.24 16 2 N -0.72 -6.75 5.71 -484.52 -2.77 -9.51 16 3 C 0.50 9.36 7.82 87.66 0.69 10.05 16 4 O -0.57 -19.45 14.18 20.41 0.29 -19.16 16 5 C -0.15 -1.36 6.19 29.10 0.18 -1.18 16 6 C 0.50 11.25 7.82 87.66 0.69 11.94 16 7 O -0.57 -21.73 14.18 20.41 0.29 -21.44 16 8 N -0.71 -11.75 5.37 -463.07 -2.49 -14.24 16 9 C 0.12 2.97 5.08 86.38 0.44 3.41 16 10 C 0.13 2.44 2.95 45.34 0.13 2.57 16 11 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 12 C -0.12 -0.96 6.23 31.78 0.20 -0.77 16 13 C -0.12 -1.02 7.08 31.98 0.23 -0.79 16 14 C 0.08 1.40 6.74 86.85 0.59 1.98 16 15 N -0.61 -15.62 3.07 -788.09 -2.42 -18.04 16 16 C 0.55 20.20 7.69 87.66 0.67 20.87 16 17 O -0.56 -25.34 14.65 -3.04 -0.04 -25.38 16 18 C -0.10 -4.07 5.09 71.24 0.36 -3.71 16 19 S -0.18 -9.44 18.55 -56.49 -1.05 -10.48 16 20 C -0.53 -31.46 10.04 67.95 0.68 -30.78 16 21 H 0.06 3.98 8.03 -2.91 -0.02 3.96 16 22 C 0.05 2.86 5.50 84.86 0.47 3.33 16 23 N -0.91 -56.41 13.97 21.65 0.30 -56.11 16 24 Si 0.91 46.40 27.74 68.60 1.90 48.30 16 25 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.24 -12.52 6.74 99.48 0.67 -11.85 16 27 H -0.26 -12.29 7.11 99.48 0.71 -11.58 16 28 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.42 -0.16 8.83 -92.71 -0.82 -0.98 16 32 H 0.17 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H 0.16 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.42 2.55 8.42 -92.70 -0.78 1.77 16 35 H 0.03 1.20 6.55 -2.39 -0.02 1.19 16 36 H 0.05 1.51 8.01 -2.39 -0.02 1.49 16 37 H 0.08 0.73 7.77 -2.39 -0.02 0.71 16 38 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.08 1.44 7.47 -2.39 -0.02 1.42 16 43 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.11 4.14 7.95 -2.39 -0.02 4.12 16 45 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -104.34 388.17 0.10 -104.24 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -0.61 Total: 2.66 kcal Atomic # 6 Polarization: 12.48 SS G_CDS: 6.69 Total: 19.17 kcal Atomic # 7 Polarization: -90.54 SS G_CDS: -7.37 Total: -97.90 kcal Atomic # 8 Polarization: -66.51 SS G_CDS: 0.53 Total: -65.98 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.90 Total: 48.30 kcal Atomic # 16 Polarization: -9.44 SS G_CDS: -1.05 Total: -10.48 kcal Total: -104.34 0.10 -104.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721567374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.579 kcal (2) G-P(sol) polarization free energy of solvation -104.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds