Wall clock time and date at job start Wed Apr 1 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46792 * 83.72196 * 3 2 1 5 5 H 1.08995 * 109.87534 * 303.55436 * 4 3 2 6 6 C 1.54323 * 109.88593 * 64.73791 * 4 3 2 7 7 C 1.55157 * 102.94798 * 141.60871 * 6 4 3 8 8 C 1.54914 * 101.57825 * 324.49617 * 7 6 4 9 9 N 1.47024 * 109.87938 * 182.54297 * 4 3 2 10 10 C 1.34774 * 125.64918 * 61.67871 * 9 4 3 11 11 O 1.21277 * 120.00110 * 354.81960 * 10 9 4 12 12 C 1.50707 * 119.99966 * 174.81899 * 10 9 4 13 13 S 1.80996 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.76199 * 99.99877 * 180.02562 * 13 12 10 15 15 H 1.07989 * 120.00242 * 359.97438 * 14 13 12 16 16 C 1.38804 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46723 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46861 * 119.99733 * 18 16 14 21 21 H 1.48496 * 109.47035 * 240.00138 * 18 16 14 22 22 C 1.34778 * 119.99785 * 180.02562 * 2 1 3 23 23 O 1.21289 * 119.99626 * 179.97438 * 22 2 1 24 24 C 1.50697 * 120.00391 * 0.02562 * 22 2 1 25 25 C 1.50699 * 109.47247 * 180.02562 * 24 22 2 26 26 N 1.34776 * 119.99922 * 179.97438 * 25 24 22 27 27 O 1.21273 * 119.99997 * 359.97438 * 25 24 22 28 28 H 1.09000 * 109.46981 * 265.08623 * 1 2 3 29 29 H 1.08996 * 109.47245 * 145.08980 * 1 2 3 30 30 H 1.09002 * 109.47155 * 25.08909 * 1 2 3 31 31 H 1.09007 * 109.47033 * 203.72098 * 3 2 1 32 32 H 1.08997 * 109.47466 * 323.72327 * 3 2 1 33 33 H 1.09003 * 110.71800 * 259.97255 * 6 4 3 34 34 H 1.09002 * 110.71827 * 23.24320 * 6 4 3 35 35 H 1.09000 * 111.00402 * 206.42331 * 7 6 4 36 36 H 1.09002 * 111.00390 * 82.56943 * 7 6 4 37 37 H 1.08999 * 110.36740 * 278.16696 * 8 7 6 38 38 H 1.08996 * 110.36773 * 155.84571 * 8 7 6 39 39 H 1.08996 * 109.47004 * 299.99726 * 12 10 9 40 40 H 1.09002 * 109.47147 * 59.99628 * 12 10 9 41 41 H 0.97008 * 119.99782 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.46691 * 300.00334 * 24 22 2 43 43 H 1.08998 * 109.46992 * 59.99765 * 24 22 2 44 44 H 0.97005 * 120.00154 * 359.97438 * 26 25 24 45 45 H 0.97003 * 120.00034 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3158 1.7892 1.4339 5 1 1.3242 1.8875 1.8754 6 6 3.1747 0.8211 2.2745 7 6 3.9992 1.7795 3.1740 8 6 4.2430 2.9723 2.2160 9 7 2.9964 3.0925 1.4381 10 6 2.5536 4.2118 0.8320 11 8 1.5588 4.1733 0.1393 12 6 3.2946 5.5113 1.0150 13 16 2.4598 6.8184 0.0818 14 6 3.5070 8.1831 0.4633 15 1 4.3637 8.0434 1.1058 16 6 3.2303 9.4380 -0.0613 17 7 2.1853 9.6087 -0.8432 18 14 4.3401 10.8851 0.3436 19 1 5.4363 10.4331 1.2376 20 1 4.9171 11.4324 -0.9104 21 1 3.5486 11.9401 1.0261 22 6 2.1389 -1.1672 -0.0005 23 8 3.3518 -1.1672 -0.0010 24 6 1.3855 -2.4723 -0.0017 25 6 2.3647 -3.6178 -0.0014 26 7 1.9155 -4.8884 -0.0018 27 8 3.5571 -3.3961 -0.0009 28 1 -0.3633 -0.0880 1.0239 29 1 -0.3633 -0.8427 -0.5881 30 1 -0.3633 0.9307 -0.4358 31 1 3.1940 1.1130 -0.4134 32 1 1.6617 1.9976 -0.6080 33 1 2.5427 0.1718 2.8804 34 1 3.8317 0.2329 1.6338 35 1 4.9412 1.3203 3.4738 36 1 3.4229 2.0899 4.0456 37 1 5.0839 2.7623 1.5550 38 1 4.4248 3.8844 2.7844 39 1 3.3118 5.7739 2.0727 40 1 4.3162 5.4014 0.6512 41 1 1.9921 10.4857 -1.2101 42 1 0.7584 -2.5306 0.8880 43 1 0.7591 -2.5294 -0.8919 44 1 0.9618 -5.0657 -0.0019 45 1 2.5458 -5.6257 -0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734649411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:59 Heat of formation + Delta-G solvation = -97.790486 kcal Electronic energy + Delta-G solvation = -27906.660553 eV Core-core repulsion = 23857.807073 eV Total energy + Delta-G solvation = -4048.853480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.77956 -39.87780 -38.76106 -37.09562 -35.61817 -33.98777 -32.42384 -31.99936 -31.40015 -29.95324 -28.55371 -27.05813 -25.53938 -25.41711 -22.90169 -21.68835 -20.94463 -19.45309 -18.98049 -17.86408 -17.67137 -17.63361 -16.80635 -16.50736 -16.28957 -16.04432 -15.36951 -15.12675 -14.79918 -14.71127 -14.33677 -13.90519 -13.77924 -13.70594 -13.40893 -13.29191 -13.15791 -12.84570 -12.66427 -12.56935 -12.49849 -12.22919 -11.98063 -11.68775 -11.28395 -11.06544 -11.00947 -10.95395 -10.78522 -10.73531 -10.39445 -10.02261 -9.79618 -9.66060 -9.35784 -9.06997 -9.02734 -8.34562 -8.22460 -6.49328 -6.21380 -3.91526 2.27936 2.46569 2.52642 2.97258 3.05562 3.22232 3.24809 3.30336 3.35100 3.66341 4.08494 4.20838 4.45741 4.50060 4.53912 4.66400 4.75298 4.82281 4.92809 5.04023 5.13226 5.14077 5.17814 5.27893 5.32234 5.45703 5.53634 5.64653 5.70813 5.74114 5.79767 5.86021 5.90536 6.01785 6.13251 6.16748 6.30688 6.40480 6.57381 6.90450 7.16808 7.60818 7.70484 7.90705 8.08165 8.36283 8.55411 9.24318 10.86101 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.002159 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.715300 B =12964.469778 C =13498.678377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.613 5.613 3 C 0.103 3.897 4 C 0.129 3.871 5 H 0.072 0.928 6 C -0.131 4.131 7 C -0.132 4.132 8 C 0.101 3.899 9 N -0.620 5.620 10 C 0.550 3.450 11 O -0.517 6.517 12 C -0.147 4.147 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.511 3.489 23 O -0.492 6.492 24 C -0.166 4.166 25 C 0.514 3.486 26 N -0.862 5.862 27 O -0.495 6.495 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.399 0.601 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.568 -28.311 6.116 29.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.349 5.349 3 C -0.020 4.020 4 C 0.024 3.976 5 H 0.090 0.910 6 C -0.169 4.169 7 C -0.170 4.170 8 C -0.022 4.022 9 N -0.358 5.358 10 C 0.339 3.661 11 O -0.391 6.391 12 C -0.298 4.298 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C 0.296 3.704 23 O -0.364 6.364 24 C -0.209 4.209 25 C 0.296 3.704 26 N -0.428 5.428 27 O -0.366 6.366 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.227 0.773 45 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.743 -27.788 4.929 28.617 hybrid contribution 1.297 0.594 1.121 1.814 sum -3.446 -27.194 6.050 28.071 Atomic orbital electron populations 1.21870 0.79339 1.03821 1.01821 1.47779 1.07036 1.05769 1.74278 1.21977 0.98942 0.83972 0.97127 1.21836 0.96691 0.83149 0.95920 0.90993 1.22837 0.98867 0.97022 0.98190 1.22764 1.00908 0.95639 0.97706 1.22316 0.87069 0.99236 0.93594 1.48560 1.24002 1.09016 1.54183 1.20040 0.84483 0.83462 0.78098 1.90665 1.26041 1.84972 1.37463 1.23518 1.03623 0.96815 1.05823 1.85339 1.37362 0.98370 1.62335 1.22904 1.14565 0.94965 1.35761 0.90874 1.24994 0.95685 0.98350 0.94585 1.70029 1.25900 1.23805 1.30581 0.86115 0.79966 0.81111 0.78306 1.19599 1.20561 1.20582 1.19928 0.88189 0.84564 0.77682 1.90840 1.12927 1.86195 1.46434 1.21636 0.99671 0.93052 1.06542 1.20029 0.89601 0.84006 0.76748 1.43872 1.11787 1.07625 1.79466 1.90924 1.16130 1.83839 1.45735 0.92464 0.91353 0.90002 0.89356 0.88616 0.91105 0.88637 0.89925 0.90812 0.91219 0.90224 0.89276 0.89275 0.92261 0.86108 0.86086 0.77327 0.76655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 10.19 59.85 0.61 1.09 16 2 N -0.61 -6.19 2.74 -181.57 -0.50 -6.69 16 3 C 0.10 1.37 5.01 -4.04 -0.02 1.35 16 4 C 0.13 1.67 3.16 -66.95 -0.21 1.46 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.13 -1.46 5.73 -24.90 -0.14 -1.61 16 7 C -0.13 -1.32 7.09 -24.58 -0.17 -1.49 16 8 C 0.10 1.22 6.74 -2.52 -0.02 1.20 16 9 N -0.62 -9.34 3.06 -163.01 -0.50 -9.84 16 10 C 0.55 10.59 7.69 -10.98 -0.08 10.51 16 11 O -0.52 -11.45 14.68 5.56 0.08 -11.37 16 12 C -0.15 -3.06 5.09 36.01 0.18 -2.87 16 13 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 14 C -0.53 -15.29 9.50 30.94 0.29 -15.00 16 15 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 16 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 17 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 18 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.51 5.58 7.10 -10.99 -0.08 5.50 16 23 O -0.49 -7.68 11.70 -18.97 -0.22 -7.90 16 24 C -0.17 -0.99 4.80 -29.04 -0.14 -1.13 16 25 C 0.51 4.42 8.09 -10.99 -0.09 4.33 16 26 N -0.86 -3.38 8.87 31.22 0.28 -3.10 16 27 O -0.49 -7.27 15.02 -18.95 -0.28 -7.55 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.24 6.64 -51.93 -0.34 -0.11 16 30 H 0.08 0.62 7.91 -51.93 -0.41 0.21 16 31 H 0.09 1.34 7.18 -51.93 -0.37 0.97 16 32 H 0.10 1.46 6.43 -51.93 -0.33 1.13 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 1.27 5.74 -51.93 -0.30 0.97 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.08 0.92 7.47 -51.93 -0.39 0.53 16 39 H 0.09 1.73 7.96 -51.92 -0.41 1.32 16 40 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 42 H 0.12 0.34 8.11 -51.93 -0.42 -0.08 16 43 H 0.12 0.37 7.41 -51.93 -0.38 -0.01 16 44 H 0.40 0.12 8.83 -40.82 -0.36 -0.24 16 45 H 0.40 1.45 8.93 -40.82 -0.36 1.08 16 LS Contribution 382.13 15.07 5.76 5.76 Total: -1.00 -40.16 382.13 -8.45 -48.60 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.60 Total: -0.44 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 0.03 Total: 5.34 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.01 Total: -45.10 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.42 Total: -26.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -40.16 -8.45 -48.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734649411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.186 kcal (2) G-P(sol) polarization free energy of solvation -40.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds