Wall clock time and date at job start Wed Apr 1 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46498 * 119.99782 * 2 1 4 4 C 1.53000 * 109.46792 * 83.72196 * 3 2 1 5 5 H 1.08995 * 109.87534 * 303.55436 * 4 3 2 6 6 C 1.54323 * 109.88593 * 64.73791 * 4 3 2 7 7 C 1.55157 * 102.94798 * 141.60871 * 6 4 3 8 8 C 1.54914 * 101.57825 * 324.49617 * 7 6 4 9 9 N 1.47024 * 109.87938 * 182.54297 * 4 3 2 10 10 C 1.34774 * 125.64918 * 61.67871 * 9 4 3 11 11 O 1.21277 * 120.00110 * 354.81960 * 10 9 4 12 12 C 1.50707 * 119.99966 * 174.81899 * 10 9 4 13 13 S 1.80996 * 109.47058 * 179.97438 * 12 10 9 14 14 C 1.76199 * 99.99877 * 180.02562 * 13 12 10 15 15 H 1.07989 * 120.00242 * 359.97438 * 14 13 12 16 16 C 1.38804 * 119.99793 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99960 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00005 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46723 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46861 * 119.99733 * 18 16 14 21 21 H 1.48496 * 109.47035 * 240.00138 * 18 16 14 22 22 C 1.34778 * 119.99785 * 180.02562 * 2 1 3 23 23 O 1.21289 * 119.99626 * 179.97438 * 22 2 1 24 24 C 1.50697 * 120.00391 * 0.02562 * 22 2 1 25 25 C 1.50699 * 109.47247 * 180.02562 * 24 22 2 26 26 N 1.34776 * 119.99922 * 179.97438 * 25 24 22 27 27 O 1.21273 * 119.99997 * 359.97438 * 25 24 22 28 28 H 1.09000 * 109.46981 * 265.08623 * 1 2 3 29 29 H 1.08996 * 109.47245 * 145.08980 * 1 2 3 30 30 H 1.09002 * 109.47155 * 25.08909 * 1 2 3 31 31 H 1.09007 * 109.47033 * 203.72098 * 3 2 1 32 32 H 1.08997 * 109.47466 * 323.72327 * 3 2 1 33 33 H 1.09003 * 110.71800 * 259.97255 * 6 4 3 34 34 H 1.09002 * 110.71827 * 23.24320 * 6 4 3 35 35 H 1.09000 * 111.00402 * 206.42331 * 7 6 4 36 36 H 1.09002 * 111.00390 * 82.56943 * 7 6 4 37 37 H 1.08999 * 110.36740 * 278.16696 * 8 7 6 38 38 H 1.08996 * 110.36773 * 155.84571 * 8 7 6 39 39 H 1.08996 * 109.47004 * 299.99726 * 12 10 9 40 40 H 1.09002 * 109.47147 * 59.99628 * 12 10 9 41 41 H 0.97008 * 119.99782 * 180.02562 * 17 16 14 42 42 H 1.09005 * 109.46691 * 300.00334 * 24 22 2 43 43 H 1.08998 * 109.46992 * 59.99765 * 24 22 2 44 44 H 0.97005 * 120.00154 * 359.97438 * 26 25 24 45 45 H 0.97003 * 120.00034 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3158 1.7892 1.4339 5 1 1.3242 1.8875 1.8754 6 6 3.1747 0.8211 2.2745 7 6 3.9992 1.7795 3.1740 8 6 4.2430 2.9723 2.2160 9 7 2.9964 3.0925 1.4381 10 6 2.5536 4.2118 0.8320 11 8 1.5588 4.1733 0.1393 12 6 3.2946 5.5113 1.0150 13 16 2.4598 6.8184 0.0818 14 6 3.5070 8.1831 0.4633 15 1 4.3637 8.0434 1.1058 16 6 3.2303 9.4380 -0.0613 17 7 2.1853 9.6087 -0.8432 18 14 4.3401 10.8851 0.3436 19 1 5.4363 10.4331 1.2376 20 1 4.9171 11.4324 -0.9104 21 1 3.5486 11.9401 1.0261 22 6 2.1389 -1.1672 -0.0005 23 8 3.3518 -1.1672 -0.0010 24 6 1.3855 -2.4723 -0.0017 25 6 2.3647 -3.6178 -0.0014 26 7 1.9155 -4.8884 -0.0018 27 8 3.5571 -3.3961 -0.0009 28 1 -0.3633 -0.0880 1.0239 29 1 -0.3633 -0.8427 -0.5881 30 1 -0.3633 0.9307 -0.4358 31 1 3.1940 1.1130 -0.4134 32 1 1.6617 1.9976 -0.6080 33 1 2.5427 0.1718 2.8804 34 1 3.8317 0.2329 1.6338 35 1 4.9412 1.3203 3.4738 36 1 3.4229 2.0899 4.0456 37 1 5.0839 2.7623 1.5550 38 1 4.4248 3.8844 2.7844 39 1 3.3118 5.7739 2.0727 40 1 4.3162 5.4014 0.6512 41 1 1.9921 10.4857 -1.2101 42 1 0.7584 -2.5306 0.8880 43 1 0.7591 -2.5294 -0.8919 44 1 0.9618 -5.0657 -0.0019 45 1 2.5458 -5.6257 -0.0021 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734649411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:58 Heat of formation + Delta-G solvation = -128.761603 kcal Electronic energy + Delta-G solvation = -27908.003561 eV Core-core repulsion = 23857.807073 eV Total energy + Delta-G solvation = -4050.196488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69217 -40.94942 -39.62691 -38.37590 -36.49043 -34.59887 -34.57547 -33.18644 -32.29314 -30.86302 -29.90702 -27.77724 -27.66669 -26.40167 -24.04663 -22.44096 -21.86678 -20.47242 -20.12807 -19.52212 -18.61576 -18.17634 -18.09279 -17.51414 -17.05886 -16.89508 -16.76246 -16.51066 -16.29481 -15.91904 -15.76161 -15.20587 -14.87511 -14.53126 -14.46199 -14.21499 -14.18579 -14.03730 -13.80975 -13.56916 -13.53097 -13.17306 -13.16771 -12.96420 -12.92034 -12.74272 -12.61002 -12.18492 -11.90271 -11.73986 -11.69588 -11.16869 -11.12940 -10.93367 -10.53706 -10.48452 -10.29918 -10.03943 -9.43579 -8.68074 -8.36167 -6.14012 1.20985 1.40440 1.41870 1.50421 1.55564 1.65355 1.77684 1.79378 2.18602 2.26159 2.77602 2.98002 3.21315 3.41212 3.51921 3.58439 3.84841 3.91547 4.09873 4.13626 4.20336 4.23350 4.25226 4.34036 4.40510 4.44561 4.49849 4.58878 4.68675 4.76915 4.79240 4.88668 4.98163 4.98760 5.02384 5.20707 5.36135 5.41058 5.53100 5.99568 6.18865 6.34609 6.41413 6.59035 7.05287 7.07489 7.24010 7.51439 8.73280 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.002159 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.715300 B =12964.469778 C =13498.678377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.611 5.611 3 C 0.112 3.888 4 C 0.129 3.871 5 H 0.076 0.924 6 C -0.120 4.120 7 C -0.120 4.120 8 C 0.090 3.910 9 N -0.613 5.613 10 C 0.549 3.451 11 O -0.555 6.555 12 C -0.122 4.122 13 S -0.143 6.143 14 C -0.547 4.547 15 H 0.081 0.919 16 C 0.014 3.986 17 N -0.910 5.910 18 Si 0.999 3.001 19 H -0.258 1.258 20 H -0.274 1.274 21 H -0.272 1.272 22 C 0.502 3.498 23 O -0.546 6.546 24 C -0.154 4.154 25 C 0.508 3.492 26 N -0.837 5.837 27 O -0.567 6.567 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.272 0.728 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.420 0.580 45 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.980 -29.962 8.118 31.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.346 5.346 3 C -0.012 4.012 4 C 0.025 3.975 5 H 0.094 0.906 6 C -0.158 4.158 7 C -0.158 4.158 8 C -0.032 4.032 9 N -0.348 5.348 10 C 0.338 3.662 11 O -0.433 6.433 12 C -0.273 4.273 13 S 0.085 5.915 14 C -0.695 4.695 15 H 0.099 0.901 16 C -0.191 4.191 17 N -0.546 5.546 18 Si 0.820 3.180 19 H -0.182 1.182 20 H -0.199 1.199 21 H -0.197 1.197 22 C 0.290 3.710 23 O -0.422 6.422 24 C -0.196 4.196 25 C 0.291 3.709 26 N -0.403 5.403 27 O -0.444 6.444 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.181 0.819 43 H 0.177 0.823 44 H 0.252 0.748 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -5.224 -29.524 6.958 30.779 hybrid contribution 1.380 0.931 0.499 1.738 sum -3.845 -28.592 7.457 29.798 Atomic orbital electron populations 1.22154 0.76765 1.04642 1.03820 1.47860 1.08463 1.04440 1.73801 1.21592 0.97594 0.85231 0.96828 1.21980 0.97098 0.82355 0.96077 0.90615 1.22715 0.98576 0.96629 0.97834 1.22768 1.01872 0.94037 0.97140 1.22624 0.85699 1.00939 0.93966 1.48517 1.24834 1.08602 1.52877 1.19732 0.84045 0.84067 0.78402 1.90650 1.27692 1.85611 1.39351 1.23325 1.03292 0.95296 1.05432 1.85472 1.39765 1.01573 1.64725 1.23226 1.14755 0.95460 1.36018 0.90094 1.26120 0.97243 1.01609 0.94121 1.70182 1.27895 1.24786 1.31771 0.84908 0.77917 0.76755 0.78387 1.18162 1.19923 1.19742 1.20817 0.87929 0.85950 0.76316 1.90829 1.15543 1.86990 1.48800 1.21699 0.98888 0.88744 1.10236 1.20523 0.89034 0.85635 0.75663 1.43678 1.13212 1.06287 1.77118 1.90909 1.19110 1.84995 1.49432 0.90335 0.87486 0.91777 0.92093 0.91266 0.89176 0.90708 0.87957 0.89390 0.90968 0.89188 0.87534 0.88074 0.91942 0.81874 0.82327 0.74806 0.76315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 10.19 127.77 1.30 2.02 16 2 N -0.61 -11.90 2.74 -846.74 -2.32 -14.22 16 3 C 0.11 3.12 5.01 86.38 0.43 3.55 16 4 C 0.13 3.32 3.16 45.34 0.14 3.46 16 5 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 6 C -0.12 -2.51 5.73 31.78 0.18 -2.33 16 7 C -0.12 -2.12 7.09 31.99 0.23 -1.89 16 8 C 0.09 2.05 6.74 86.86 0.59 2.63 16 9 N -0.61 -18.39 3.06 -788.04 -2.41 -20.80 16 10 C 0.55 21.59 7.69 87.66 0.67 22.26 16 11 O -0.56 -25.69 14.68 -3.02 -0.04 -25.73 16 12 C -0.12 -5.12 5.09 71.24 0.36 -4.76 16 13 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 14 C -0.55 -31.67 9.50 67.96 0.65 -31.03 16 15 H 0.08 4.39 7.80 -2.92 -0.02 4.37 16 16 C 0.01 0.80 5.49 84.86 0.47 1.27 16 17 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16 18 Si 1.00 44.09 29.55 68.60 2.03 46.12 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C 0.50 10.51 7.10 87.66 0.62 11.13 16 23 O -0.55 -17.64 11.70 20.38 0.24 -17.40 16 24 C -0.15 -1.33 4.80 29.10 0.14 -1.20 16 25 C 0.51 7.89 8.09 87.66 0.71 8.59 16 26 N -0.84 -4.35 8.87 -173.54 -1.54 -5.89 16 27 O -0.57 -17.00 15.02 20.43 0.31 -16.69 16 28 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.11 0.29 6.64 -2.39 -0.02 0.28 16 30 H 0.06 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.06 2.00 7.18 -2.38 -0.02 1.98 16 32 H 0.07 2.28 6.43 -2.39 -0.02 2.26 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.98 5.74 -2.39 -0.01 1.97 16 35 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.09 1.89 7.47 -2.39 -0.02 1.87 16 39 H 0.11 4.06 7.96 -2.40 -0.02 4.04 16 40 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 41 H 0.27 15.47 8.31 -92.70 -0.77 14.70 16 42 H 0.16 0.05 8.11 -2.38 -0.02 0.04 16 43 H 0.16 0.20 7.41 -2.39 -0.02 0.18 16 44 H 0.42 -1.40 8.83 -92.70 -0.82 -2.22 16 45 H 0.41 2.15 8.93 -92.71 -0.83 1.32 16 Total: -1.00 -95.06 382.13 1.26 -93.81 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -0.61 Total: 12.11 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 6.49 Total: 13.70 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -5.99 Total: -96.73 kcal Atomic # 8 Polarization: -60.33 SS G_CDS: 0.50 Total: -59.82 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -95.06 1.26 -93.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734649411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.955 kcal (2) G-P(sol) polarization free energy of solvation -95.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds