Wall clock time and date at job start Wed Apr 1 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99653 * 2 1 4 4 O 1.21286 * 119.99657 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00358 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47463 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00227 * 179.97438 * 6 5 3 8 8 H 1.07996 * 120.00163 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00116 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99884 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47170 * 59.99956 * 11 9 7 13 13 H 1.48502 * 109.46841 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47027 * 300.00078 * 11 9 7 15 15 C 1.46496 * 120.00013 * 179.97438 * 2 1 3 16 16 C 1.53036 * 109.46254 * 300.00431 * 15 2 1 17 17 C 1.53192 * 109.31574 * 181.38610 * 16 15 2 18 18 N 1.46929 * 108.77598 * 305.36714 * 17 16 15 19 19 C 1.34774 * 120.63262 * 233.58878 * 18 17 16 20 20 O 1.21280 * 119.99762 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00337 * 179.97438 * 19 18 17 22 22 C 1.50694 * 109.47166 * 179.97438 * 21 19 18 23 23 N 1.34784 * 119.99988 * 179.97438 * 22 21 19 24 24 O 1.21283 * 120.00363 * 359.97438 * 22 21 19 25 25 C 1.46932 * 118.73820 * 53.85477 * 18 17 16 26 26 C 1.53037 * 109.46220 * 60.07352 * 15 2 1 27 27 H 1.08994 * 109.47215 * 270.00786 * 1 2 3 28 28 H 1.09003 * 109.47044 * 30.00729 * 1 2 3 29 29 H 1.09004 * 109.46838 * 150.00272 * 1 2 3 30 30 H 1.09004 * 109.46961 * 300.00426 * 5 3 2 31 31 H 1.09000 * 109.47488 * 60.00398 * 5 3 2 32 32 H 0.96996 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.44735 * 180.02562 * 15 2 1 34 34 H 1.09006 * 109.50005 * 61.43384 * 16 15 2 35 35 H 1.09004 * 109.52617 * 301.35193 * 16 15 2 36 36 H 1.08999 * 109.58829 * 185.57616 * 17 16 15 37 37 H 1.08998 * 109.70434 * 65.22086 * 17 16 15 38 38 H 1.08998 * 109.46890 * 59.99540 * 21 19 18 39 39 H 1.09002 * 109.46875 * 299.99342 * 21 19 18 40 40 H 0.97000 * 119.99339 * 0.02562 * 23 22 21 41 41 H 0.96995 * 120.00015 * 179.72576 * 23 22 21 42 42 H 1.08997 * 109.58127 * 65.93291 * 25 18 17 43 43 H 1.08995 * 109.58332 * 186.35396 * 25 18 17 44 44 H 1.09004 * 109.49564 * 298.57139 * 26 15 2 45 45 H 1.09002 * 109.49829 * 58.65551 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4414 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0024 9 6 1.9281 6.5081 -0.0028 10 7 3.2265 6.7248 -0.0026 11 14 0.7406 7.9500 -0.0036 12 1 -0.1148 7.8875 1.2087 13 1 1.5068 9.2222 -0.0044 14 1 -0.1141 7.8867 -1.2162 15 6 2.1975 -1.2687 0.0006 16 6 1.8276 -2.0705 1.2505 17 6 2.6212 -3.3807 1.2653 18 7 2.3851 -4.0910 0.0009 19 6 1.9589 -5.3696 0.0007 20 8 1.7671 -5.9449 1.0510 21 6 1.7206 -6.0843 -1.3044 22 6 1.2527 -7.4900 -1.0291 23 7 0.9754 -8.3208 -2.0537 24 8 1.1256 -7.8740 0.1143 25 6 2.6281 -3.3827 -1.2633 26 6 1.8291 -2.0708 -1.2496 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8901 -0.5138 30 1 0.7590 2.5298 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.5666 7.6331 -0.0024 33 1 3.2691 -1.0691 0.0009 34 1 0.7603 -2.2918 1.2382 35 1 2.0684 -1.4893 2.1406 36 1 2.2898 -3.9993 2.0993 37 1 3.6845 -3.1652 1.3701 38 1 2.6482 -6.1158 -1.8759 39 1 0.9595 -5.5530 -1.8759 40 1 1.0774 -8.0137 -2.9681 41 1 0.6780 -9.2269 -1.8765 42 1 3.6916 -3.1652 -1.3615 43 1 2.3012 -4.0027 -2.0980 44 1 0.7617 -2.2919 -1.2385 45 1 2.0712 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735097885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:46 Heat of formation + Delta-G solvation = -100.946749 kcal Electronic energy + Delta-G solvation = -27474.535433 eV Core-core repulsion = 23425.545087 eV Total energy + Delta-G solvation = -4048.990346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92092 -39.91632 -38.98231 -37.32293 -35.24658 -34.06950 -32.60378 -32.44993 -31.68230 -30.31667 -28.92802 -26.99773 -25.56268 -24.87977 -23.74945 -22.02959 -20.82696 -19.45326 -19.12184 -17.97482 -17.73518 -17.65087 -16.81533 -16.34644 -16.32211 -16.03465 -15.57409 -15.45379 -14.94025 -14.82463 -14.33521 -14.19679 -14.04363 -13.83305 -13.52378 -13.25426 -13.21733 -13.13992 -12.69358 -12.56767 -12.47996 -12.33267 -12.02953 -11.94923 -11.58926 -11.12886 -11.07062 -11.05474 -10.84788 -10.74723 -10.46440 -10.08013 -9.83600 -9.76323 -9.43166 -9.07967 -8.95296 -8.58054 -8.25895 -6.52750 -6.23625 -3.94545 2.20087 2.40473 2.44782 2.87248 2.99345 3.17625 3.21695 3.23734 3.27373 3.56261 3.95873 4.18346 4.28243 4.42793 4.56636 4.63534 4.66889 4.67558 4.86498 4.92668 4.94844 5.02978 5.11340 5.13684 5.17760 5.37917 5.40790 5.50304 5.52514 5.60642 5.68420 5.70610 5.79805 5.88500 6.05242 6.10277 6.21556 6.35081 6.60633 6.84506 7.04714 7.47955 7.57199 7.82368 7.98301 8.32775 8.50445 9.21549 10.83704 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036222 B = 0.001833 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.826476 B =15275.458870 C =15392.761378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.535 3.465 4 O -0.516 6.516 5 C -0.150 4.150 6 S -0.061 6.061 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.274 1.274 15 C 0.141 3.859 16 C -0.141 4.141 17 C 0.117 3.883 18 N -0.616 5.616 19 C 0.515 3.485 20 O -0.497 6.497 21 C -0.167 4.167 22 C 0.514 3.486 23 N -0.861 5.861 24 O -0.497 6.497 25 C 0.109 3.891 26 C -0.145 4.145 27 H 0.054 0.946 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.269 0.731 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.399 0.601 41 H 0.403 0.597 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.780 -26.463 -7.939 28.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.355 5.355 3 C 0.323 3.677 4 O -0.391 6.391 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.685 4.685 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.745 3.255 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.200 1.200 15 C 0.037 3.963 16 C -0.180 4.180 17 C -0.006 4.006 18 N -0.352 5.352 19 C 0.300 3.700 20 O -0.369 6.369 21 C -0.210 4.210 22 C 0.297 3.703 23 N -0.427 5.427 24 O -0.368 6.368 25 C -0.014 4.014 26 C -0.184 4.184 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.090 0.910 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.228 0.772 41 H 0.234 0.766 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.090 0.910 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.969 -26.702 -6.502 27.768 hybrid contribution -2.391 0.902 -0.667 2.641 sum -6.360 -25.800 -7.170 27.523 Atomic orbital electron populations 1.21741 0.79905 1.02990 1.01813 1.47903 1.06724 1.05278 1.75637 1.20371 0.87939 0.84575 0.74851 1.90687 1.13739 1.86710 1.47924 1.23556 1.04562 0.97214 1.04715 1.85385 1.08034 0.93330 1.96715 1.22816 0.94267 0.92225 1.59144 0.91004 1.24987 0.95671 0.98361 0.94508 1.70003 1.11744 1.21783 1.46712 0.86230 0.80194 0.80315 0.78798 1.19935 1.20793 1.19951 1.20953 0.98872 0.82798 0.93658 1.22278 1.01015 0.95726 0.99027 1.21571 1.00004 0.92511 0.86512 1.48170 1.67415 1.12010 1.07595 1.19915 0.77833 0.81491 0.90729 1.90864 1.48773 1.64671 1.32605 1.21641 1.05373 0.95053 0.98966 1.20017 0.77863 0.87041 0.85415 1.43866 1.72536 1.16999 1.09256 1.90925 1.49220 1.76073 1.20626 1.21851 1.00748 0.93189 0.85632 1.22377 1.00857 0.95810 0.99329 0.92755 0.90609 0.91454 0.89269 0.89274 0.92114 0.87736 0.91213 0.89976 0.88570 0.90959 0.85958 0.85975 0.77250 0.76601 0.90460 0.89523 0.91046 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 9.33 59.85 0.56 1.33 16 2 N -0.62 -8.00 2.76 -173.89 -0.48 -8.48 16 3 C 0.53 9.64 7.69 -10.99 -0.08 9.55 16 4 O -0.52 -11.23 15.19 5.55 0.08 -11.15 16 5 C -0.15 -2.95 4.71 36.00 0.17 -2.78 16 6 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 10 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 11 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 13 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 C 0.14 1.51 2.48 -67.90 -0.17 1.34 16 16 C -0.14 -1.36 5.34 -26.61 -0.14 -1.50 16 17 C 0.12 1.09 6.43 -3.71 -0.02 1.07 16 18 N -0.62 -5.09 2.97 -172.50 -0.51 -5.60 16 19 C 0.51 5.11 7.69 -10.99 -0.08 5.03 16 20 O -0.50 -7.54 13.59 -18.96 -0.26 -7.79 16 21 C -0.17 -0.88 4.53 -29.04 -0.13 -1.01 16 22 C 0.51 4.17 8.09 -10.98 -0.09 4.08 16 23 N -0.86 -3.01 8.87 31.22 0.28 -2.73 16 24 O -0.50 -7.10 15.02 -18.96 -0.28 -7.39 16 25 C 0.11 0.62 6.37 -3.49 -0.02 0.60 16 26 C -0.14 -1.08 5.33 -26.39 -0.14 -1.22 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 29 H 0.07 0.50 6.46 -51.93 -0.34 0.17 16 30 H 0.09 1.61 7.40 -51.91 -0.38 1.23 16 31 H 0.09 1.65 8.11 -51.92 -0.42 1.23 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.10 1.36 6.90 -51.93 -0.36 1.00 16 34 H 0.07 0.66 7.72 -51.93 -0.40 0.25 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.10 1.04 7.01 -51.93 -0.36 0.67 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.12 0.27 7.93 -51.93 -0.41 -0.15 16 39 H 0.12 0.28 7.70 -51.93 -0.40 -0.12 16 40 H 0.40 -0.03 8.83 -40.82 -0.36 -0.39 16 41 H 0.40 1.28 8.93 -40.82 -0.36 0.92 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.23 5.93 -51.93 -0.31 -0.08 16 44 H 0.07 0.48 6.73 -51.93 -0.35 0.13 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -40.82 378.96 -8.37 -49.20 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.45 Total: -2.61 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 0.04 Total: 3.72 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.02 Total: -41.95 kcal Atomic # 8 Polarization: -25.87 SS G_CDS: -0.46 Total: -26.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -40.82 -8.37 -49.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735097885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.750 kcal (2) G-P(sol) polarization free energy of solvation -40.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds