Wall clock time and date at job start Wed Apr 1 2020 01:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99653 * 2 1 4 4 O 1.21286 * 119.99657 * 179.97438 * 3 2 1 5 5 C 1.50694 * 120.00358 * 359.97438 * 3 2 1 6 6 S 1.80999 * 109.47463 * 180.02562 * 5 3 2 7 7 C 1.76197 * 100.00227 * 179.97438 * 6 5 3 8 8 H 1.07996 * 120.00163 * 0.02562 * 7 6 5 9 9 C 1.38804 * 120.00009 * 179.97438 * 7 6 5 10 10 N 1.31629 * 120.00116 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99884 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47170 * 59.99956 * 11 9 7 13 13 H 1.48502 * 109.46841 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47027 * 300.00078 * 11 9 7 15 15 C 1.46496 * 120.00013 * 179.97438 * 2 1 3 16 16 C 1.53036 * 109.46254 * 300.00431 * 15 2 1 17 17 C 1.53192 * 109.31574 * 181.38610 * 16 15 2 18 18 N 1.46929 * 108.77598 * 305.36714 * 17 16 15 19 19 C 1.34774 * 120.63262 * 233.58878 * 18 17 16 20 20 O 1.21280 * 119.99762 * 359.97438 * 19 18 17 21 21 C 1.50698 * 120.00337 * 179.97438 * 19 18 17 22 22 C 1.50694 * 109.47166 * 179.97438 * 21 19 18 23 23 N 1.34784 * 119.99988 * 179.97438 * 22 21 19 24 24 O 1.21283 * 120.00363 * 359.97438 * 22 21 19 25 25 C 1.46932 * 118.73820 * 53.85477 * 18 17 16 26 26 C 1.53037 * 109.46220 * 60.07352 * 15 2 1 27 27 H 1.08994 * 109.47215 * 270.00786 * 1 2 3 28 28 H 1.09003 * 109.47044 * 30.00729 * 1 2 3 29 29 H 1.09004 * 109.46838 * 150.00272 * 1 2 3 30 30 H 1.09004 * 109.46961 * 300.00426 * 5 3 2 31 31 H 1.09000 * 109.47488 * 60.00398 * 5 3 2 32 32 H 0.96996 * 120.00053 * 180.02562 * 10 9 7 33 33 H 1.08999 * 109.44735 * 180.02562 * 15 2 1 34 34 H 1.09006 * 109.50005 * 61.43384 * 16 15 2 35 35 H 1.09004 * 109.52617 * 301.35193 * 16 15 2 36 36 H 1.08999 * 109.58829 * 185.57616 * 17 16 15 37 37 H 1.08998 * 109.70434 * 65.22086 * 17 16 15 38 38 H 1.08998 * 109.46890 * 59.99540 * 21 19 18 39 39 H 1.09002 * 109.46875 * 299.99342 * 21 19 18 40 40 H 0.97000 * 119.99339 * 0.02562 * 23 22 21 41 41 H 0.96995 * 120.00015 * 179.72576 * 23 22 21 42 42 H 1.08997 * 109.58127 * 65.93291 * 25 18 17 43 43 H 1.08995 * 109.58332 * 186.35396 * 25 18 17 44 44 H 1.09004 * 109.49564 * 298.57139 * 26 15 2 45 45 H 1.09002 * 109.49829 * 58.65551 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0006 6 16 2.5615 3.8481 -0.0012 7 6 1.4414 5.2082 -0.0026 8 1 0.3762 5.0305 -0.0024 9 6 1.9281 6.5081 -0.0028 10 7 3.2265 6.7248 -0.0026 11 14 0.7406 7.9500 -0.0036 12 1 -0.1148 7.8875 1.2087 13 1 1.5068 9.2222 -0.0044 14 1 -0.1141 7.8867 -1.2162 15 6 2.1975 -1.2687 0.0006 16 6 1.8276 -2.0705 1.2505 17 6 2.6212 -3.3807 1.2653 18 7 2.3851 -4.0910 0.0009 19 6 1.9589 -5.3696 0.0007 20 8 1.7671 -5.9449 1.0510 21 6 1.7206 -6.0843 -1.3044 22 6 1.2527 -7.4900 -1.0291 23 7 0.9754 -8.3208 -2.0537 24 8 1.1256 -7.8740 0.1143 25 6 2.6281 -3.3827 -1.2633 26 6 1.8291 -2.0708 -1.2496 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5140 29 1 -0.3633 -0.8901 -0.5138 30 1 0.7590 2.5298 -0.8908 31 1 0.7584 2.5303 0.8892 32 1 3.5666 7.6331 -0.0024 33 1 3.2691 -1.0691 0.0009 34 1 0.7603 -2.2918 1.2382 35 1 2.0684 -1.4893 2.1406 36 1 2.2898 -3.9993 2.0993 37 1 3.6845 -3.1652 1.3701 38 1 2.6482 -6.1158 -1.8759 39 1 0.9595 -5.5530 -1.8759 40 1 1.0774 -8.0137 -2.9681 41 1 0.6780 -9.2269 -1.8765 42 1 3.6916 -3.1652 -1.3615 43 1 2.3012 -4.0027 -2.0980 44 1 0.7617 -2.2919 -1.2385 45 1 2.0712 -1.4894 -2.1393 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735097885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:46 Heat of formation + Delta-G solvation = -132.934306 kcal Electronic energy + Delta-G solvation = -27475.922517 eV Core-core repulsion = 23425.545087 eV Total energy + Delta-G solvation = -4050.377430 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66837 -40.93681 -39.80123 -38.27523 -36.30150 -34.61670 -34.57734 -33.45835 -32.40251 -30.96801 -30.21631 -27.90396 -27.67184 -25.76474 -24.41089 -22.74387 -21.58568 -20.57773 -19.87003 -19.54484 -18.60707 -18.18497 -18.07666 -17.16211 -16.94549 -16.87174 -16.83336 -16.60614 -16.49111 -15.91323 -15.58750 -15.07045 -14.93137 -14.56851 -14.53262 -14.49435 -14.35823 -13.96753 -13.92431 -13.52777 -13.26013 -13.19984 -13.16053 -12.94183 -12.86429 -12.83507 -12.60458 -12.27086 -11.90552 -11.76878 -11.56328 -11.12340 -11.12227 -10.85813 -10.54766 -10.52825 -10.26118 -9.68963 -9.65600 -8.66202 -8.33810 -6.11956 1.26354 1.44210 1.46257 1.55438 1.58785 1.63941 1.77158 1.85022 2.11908 2.28497 2.74424 3.00212 3.27178 3.40825 3.59275 3.83338 3.86380 4.01009 4.05715 4.14484 4.21825 4.27673 4.28169 4.34615 4.40530 4.45494 4.51474 4.62306 4.66230 4.75732 4.79443 4.83077 4.93577 4.97392 5.10001 5.26342 5.42108 5.53341 5.60319 5.98747 6.20043 6.28142 6.39286 6.58472 7.07365 7.16150 7.22662 7.50667 8.75026 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036222 B = 0.001833 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.826476 B =15275.458870 C =15392.761378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.605 5.605 3 C 0.532 3.468 4 O -0.565 6.565 5 C -0.124 4.124 6 S -0.152 6.152 7 C -0.547 4.547 8 H 0.082 0.918 9 C 0.014 3.986 10 N -0.911 5.911 11 Si 0.997 3.003 12 H -0.263 1.263 13 H -0.279 1.279 14 H -0.261 1.261 15 C 0.136 3.864 16 C -0.129 4.129 17 C 0.118 3.882 18 N -0.611 5.611 19 C 0.506 3.494 20 O -0.559 6.559 21 C -0.157 4.157 22 C 0.507 3.493 23 N -0.837 5.837 24 O -0.571 6.571 25 C 0.108 3.892 26 C -0.136 4.136 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.271 0.729 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.164 0.836 39 H 0.165 0.835 40 H 0.421 0.579 41 H 0.406 0.594 42 H 0.080 0.920 43 H 0.133 0.867 44 H 0.089 0.911 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.278 -27.311 -10.606 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.338 5.338 3 C 0.320 3.680 4 O -0.443 6.443 5 C -0.275 4.275 6 S 0.075 5.925 7 C -0.695 4.695 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.547 5.547 11 Si 0.819 3.181 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.185 1.185 15 C 0.033 3.967 16 C -0.168 4.168 17 C -0.005 4.005 18 N -0.345 5.345 19 C 0.295 3.705 20 O -0.436 6.436 21 C -0.199 4.199 22 C 0.291 3.709 23 N -0.403 5.403 24 O -0.449 6.449 25 C -0.014 4.014 26 C -0.175 4.175 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.181 0.819 39 H 0.183 0.817 40 H 0.253 0.747 41 H 0.237 0.763 42 H 0.098 0.902 43 H 0.151 0.849 44 H 0.108 0.892 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.504 -27.582 -9.269 29.816 hybrid contribution -1.636 1.020 0.137 1.933 sum -8.141 -26.562 -9.132 29.244 Atomic orbital electron populations 1.22048 0.77415 1.04793 1.02996 1.47887 1.08209 1.04408 1.73260 1.20115 0.87269 0.85454 0.75139 1.90673 1.15606 1.87381 1.50668 1.23378 1.02722 0.95111 1.06268 1.85559 1.12610 0.97255 1.97027 1.23164 0.94640 0.92699 1.58974 0.89946 1.26113 0.97564 1.01654 0.93742 1.70173 1.14093 1.22507 1.47919 0.85023 0.77647 0.75953 0.79498 1.18800 1.20447 1.18519 1.21143 0.97299 0.82143 0.96098 1.22137 1.01435 0.95317 0.97924 1.21407 0.99836 0.92089 0.87209 1.48242 1.66546 1.11830 1.07914 1.20776 0.76526 0.81497 0.91745 1.90853 1.51439 1.66050 1.35232 1.21735 1.08494 0.92873 0.96800 1.20583 0.76985 0.88407 0.84942 1.43694 1.70410 1.16571 1.09596 1.90910 1.52734 1.77582 1.23660 1.22108 1.00935 0.92756 0.85560 1.22335 1.02195 0.95941 0.97054 0.91877 0.90410 0.88131 0.87236 0.87896 0.92010 0.90453 0.90304 0.91568 0.90443 0.91051 0.81904 0.81740 0.74741 0.76350 0.90211 0.84934 0.89244 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.33 127.77 1.19 2.32 16 2 N -0.60 -14.65 2.76 -822.45 -2.27 -16.92 16 3 C 0.53 19.15 7.69 87.65 0.67 19.82 16 4 O -0.56 -25.41 15.19 -3.05 -0.05 -25.46 16 5 C -0.12 -4.81 4.71 71.23 0.34 -4.47 16 6 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 7 C -0.55 -30.87 9.50 67.96 0.65 -30.22 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 9 C 0.01 0.80 5.49 84.86 0.47 1.26 16 10 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 11 Si 1.00 43.02 29.55 68.60 2.03 45.05 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 14 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 15 C 0.14 2.74 2.48 45.02 0.11 2.85 16 16 C -0.13 -2.39 5.34 30.67 0.16 -2.23 16 17 C 0.12 2.21 6.43 86.36 0.56 2.77 16 18 N -0.61 -8.80 2.97 -818.07 -2.43 -11.23 16 19 C 0.51 9.18 7.69 87.66 0.67 9.86 16 20 O -0.56 -17.40 13.59 20.41 0.28 -17.12 16 21 C -0.16 -1.01 4.53 29.10 0.13 -0.88 16 22 C 0.51 7.22 8.09 87.65 0.71 7.93 16 23 N -0.84 -3.43 8.87 -173.53 -1.54 -4.97 16 24 O -0.57 -16.65 15.02 20.40 0.31 -16.34 16 25 C 0.11 0.80 6.37 86.51 0.55 1.35 16 26 C -0.14 -1.54 5.33 30.81 0.16 -1.38 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.28 6.44 -2.39 -0.02 1.27 16 29 H 0.10 1.02 6.46 -2.39 -0.02 1.00 16 30 H 0.11 3.79 7.40 -2.39 -0.02 3.77 16 31 H 0.10 3.69 8.11 -2.39 -0.02 3.68 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.08 2.03 6.90 -2.39 -0.02 2.01 16 34 H 0.08 1.33 7.72 -2.38 -0.02 1.31 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.08 1.78 7.01 -2.39 -0.02 1.76 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.16 -0.25 7.93 -2.39 -0.02 -0.27 16 39 H 0.17 -0.31 7.70 -2.39 -0.02 -0.33 16 40 H 0.42 -1.88 8.83 -92.71 -0.82 -2.69 16 41 H 0.41 1.78 8.93 -92.71 -0.83 0.95 16 42 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.13 -0.18 5.93 -2.39 -0.01 -0.19 16 44 H 0.09 0.74 6.73 -2.38 -0.02 0.72 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -97.88 378.96 1.22 -96.66 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -0.60 Total: 6.06 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.37 Total: 8.98 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -5.95 Total: -88.34 kcal Atomic # 8 Polarization: -59.46 SS G_CDS: 0.54 Total: -58.92 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -97.88 1.22 -96.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735097885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.277 kcal (2) G-P(sol) polarization free energy of solvation -97.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds