Wall clock time and date at job start Wed Apr 1 2020 01:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 N 1.46505 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99753 * 180.02562 * 5 4 3 7 7 O 1.21279 * 120.00127 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99744 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.67263 * 59.50048 * 8 6 5 10 10 C 1.53340 * 109.67237 * 179.97438 * 8 6 5 11 11 C 1.52916 * 108.67491 * 187.26278 * 10 8 6 12 12 N 1.45756 * 110.49268 * 309.24981 * 11 10 8 13 13 C 1.33354 * 124.10155 * 19.09640 * 12 11 10 14 14 O 1.21280 * 118.24932 * 177.78033 * 13 12 11 15 15 C 1.50185 * 123.50809 * 357.73128 * 13 12 11 16 16 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 17 17 O 1.21280 * 120.00423 * 179.97438 * 16 2 1 18 18 C 1.50701 * 119.99795 * 0.02562 * 16 2 1 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 2 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47282 * 59.99711 * 24 22 20 26 26 H 1.48497 * 109.47200 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47280 * 300.00084 * 24 22 20 28 28 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 29 29 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 30 30 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 31 31 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 32 32 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 33 33 H 1.09000 * 109.46856 * 299.99630 * 4 3 2 34 34 H 1.09002 * 109.47088 * 59.99836 * 4 3 2 35 35 H 0.97002 * 119.99939 * 359.97438 * 5 4 3 36 36 H 1.08996 * 109.60895 * 307.02390 * 10 8 6 37 37 H 1.09008 * 109.60145 * 67.34474 * 10 8 6 38 38 H 1.09003 * 109.30240 * 69.56535 * 11 10 8 39 39 H 1.09001 * 109.30542 * 188.93968 * 11 10 8 40 40 H 0.96995 * 117.95072 * 199.07863 * 12 11 10 41 41 H 1.08999 * 109.41803 * 257.48960 * 15 13 12 42 42 H 1.08996 * 109.38447 * 137.74039 * 15 13 12 43 43 H 1.09002 * 109.47060 * 299.99722 * 18 16 2 44 44 H 1.09001 * 109.47380 * 59.99809 * 18 16 2 45 45 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 3.5210 3.5632 -2.6098 7 8 3.2181 3.0378 -3.6601 8 6 4.2745 4.8683 -2.6098 9 1 5.2241 4.7437 -2.0893 10 6 4.5326 5.3153 -4.0537 11 6 5.4502 6.5384 -4.0310 12 7 4.9328 7.5476 -3.1154 13 6 4.0503 7.2969 -2.1476 14 8 3.7221 8.2096 -1.4195 15 6 3.4402 5.9450 -1.9116 16 6 2.1388 -1.1672 0.0005 17 8 3.3516 -1.1673 0.0001 18 6 1.3853 -2.4723 0.0005 19 16 2.5615 -3.8481 0.0005 20 6 1.4414 -5.2082 -0.0003 21 1 0.3761 -5.0305 -0.0001 22 6 1.9281 -6.5081 0.0001 23 7 3.2264 -6.7247 0.0004 24 14 0.7407 -7.9501 0.0000 25 1 -0.1141 -7.8873 -1.2127 26 1 1.5067 -9.2222 0.0010 27 1 -0.1148 -7.8870 1.2122 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5138 31 1 1.6084 2.0283 0.5137 32 1 3.1499 1.1384 0.5139 33 1 3.0416 0.9506 -1.9563 34 1 1.5001 1.8406 -1.9564 35 1 3.4265 3.3997 -0.6025 36 1 5.0129 4.5079 -4.6063 37 1 3.5872 5.5733 -4.5312 38 1 6.4462 6.2356 -3.7079 39 1 5.5130 6.9604 -5.0340 40 1 5.2505 8.4585 -3.2162 41 1 2.4254 5.9310 -2.3091 42 1 3.4112 5.7431 -0.8409 43 1 0.7583 -2.5299 0.8903 44 1 0.7589 -2.5303 -0.8897 45 1 3.5667 -7.6331 0.0003 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737719203.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:14 Heat of formation + Delta-G solvation = -113.209935 kcal Electronic energy + Delta-G solvation = -26708.574496 eV Core-core repulsion = 22659.052378 eV Total energy + Delta-G solvation = -4049.522117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13022 -39.88596 -39.40045 -36.83937 -36.01932 -34.72170 -33.71972 -32.44773 -30.79915 -30.11321 -28.42397 -26.69284 -25.71634 -25.43868 -23.87982 -22.72883 -20.90847 -19.76666 -19.26911 -18.05808 -17.72408 -17.36240 -16.94530 -16.66311 -16.45471 -15.87849 -15.60927 -15.50293 -15.25216 -14.82027 -14.75344 -14.51389 -14.12850 -13.95652 -13.91397 -13.49064 -13.26677 -13.00879 -12.59492 -12.44168 -12.41874 -12.40388 -12.25799 -11.87255 -11.67714 -11.63834 -11.51562 -11.06560 -11.05213 -10.78566 -10.71325 -10.00114 -9.84119 -9.62747 -9.47936 -9.38751 -9.07677 -8.71108 -8.26356 -6.52863 -6.23347 -3.94410 2.12009 2.25551 2.50855 2.74651 2.94362 3.05750 3.22309 3.25738 3.28504 3.57604 3.90176 4.03476 4.11273 4.18129 4.18480 4.57659 4.62768 4.65829 4.71482 4.75277 4.94562 5.02874 5.03907 5.09358 5.11817 5.17793 5.19647 5.37184 5.39502 5.51830 5.59911 5.63398 5.72594 5.77727 5.87055 6.02459 6.09269 6.21872 6.50326 6.77300 7.09856 7.38616 7.57442 7.68317 7.85095 8.33014 8.44412 9.21821 10.83999 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027951 B = 0.001697 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.528994 B =16496.814163 C =16946.224784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.108 3.892 4 C 0.102 3.898 5 N -0.725 5.725 6 C 0.519 3.481 7 O -0.531 6.531 8 C -0.112 4.112 9 H 0.108 0.892 10 C -0.119 4.119 11 C 0.108 3.892 12 N -0.720 5.720 13 C 0.524 3.476 14 O -0.555 6.555 15 C -0.126 4.126 16 C 0.533 3.467 17 O -0.512 6.512 18 C -0.151 4.151 19 S -0.061 6.061 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.057 0.943 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.401 0.599 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.401 0.599 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.448 27.724 -4.855 28.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.016 4.016 4 C -0.023 4.023 5 N -0.377 5.377 6 C 0.305 3.695 7 O -0.406 6.406 8 C -0.134 4.134 9 H 0.126 0.874 10 C -0.157 4.157 11 C -0.016 4.016 12 N -0.373 5.373 13 C 0.311 3.689 14 O -0.433 6.433 15 C -0.167 4.167 16 C 0.321 3.679 17 O -0.385 6.385 18 C -0.301 4.301 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.235 0.765 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.236 0.764 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.012 27.393 -5.209 27.902 hybrid contribution -1.983 -0.493 0.294 2.064 sum -0.971 26.900 -4.916 27.363 Atomic orbital electron populations 1.21814 0.79202 1.03371 1.01986 1.47742 1.06988 1.05133 1.76071 1.21438 0.98935 0.85899 0.95334 1.21809 0.97026 0.85175 0.98291 1.45862 1.58727 1.24395 1.08697 1.20344 0.79465 0.85982 0.83757 1.90754 1.53889 1.64825 1.31154 1.21476 1.00272 0.92478 0.99128 0.87353 1.21738 1.01424 0.97531 0.94988 1.21471 0.97383 0.88910 0.93814 1.45506 1.44946 1.13297 1.33515 1.19963 0.78646 0.90705 0.79612 1.90795 1.60997 1.45677 1.45862 1.21659 1.00889 0.90600 1.03504 1.20430 0.87974 0.84587 0.74862 1.90704 1.13706 1.86722 1.47394 1.23561 1.04618 0.97066 1.04851 1.85398 1.07990 0.93333 1.96724 1.22814 0.94266 0.92190 1.59182 0.90956 1.24990 0.95683 0.98377 0.94493 1.70006 1.11757 1.21794 1.46686 0.86222 0.80180 0.80283 0.78805 1.19923 1.20800 1.19935 0.92452 0.91310 0.90397 0.90179 0.89114 0.90446 0.91238 0.76475 0.88358 0.90043 0.91093 0.89820 0.76353 0.87495 0.87415 0.89138 0.89101 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 10.24 59.84 0.61 1.35 16 2 N -0.62 -7.93 2.87 -181.58 -0.52 -8.45 16 3 C 0.11 1.08 5.52 -4.04 -0.02 1.05 16 4 C 0.10 1.06 6.00 -4.04 -0.02 1.04 16 5 N -0.72 -5.66 5.47 -60.29 -0.33 -5.99 16 6 C 0.52 4.67 7.13 -10.98 -0.08 4.59 16 7 O -0.53 -7.08 15.90 5.56 0.09 -6.99 16 8 C -0.11 -0.62 2.60 -91.56 -0.24 -0.86 16 9 H 0.11 0.45 8.13 -51.93 -0.42 0.03 16 10 C -0.12 -0.61 4.70 -26.60 -0.13 -0.73 16 11 C 0.11 0.34 7.17 -4.49 -0.03 0.31 16 12 N -0.72 -3.65 5.45 -61.38 -0.33 -3.99 16 13 C 0.52 4.01 7.71 -11.87 -0.09 3.92 16 14 O -0.55 -6.65 17.78 5.56 0.10 -6.55 16 15 C -0.13 -0.69 5.21 -28.10 -0.15 -0.84 16 16 C 0.53 9.64 7.69 -10.98 -0.08 9.55 16 17 O -0.51 -11.15 15.44 5.56 0.09 -11.06 16 18 C -0.15 -2.96 4.71 36.01 0.17 -2.79 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.10 9.50 30.94 0.29 -14.81 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 24 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 31 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 32 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.40 1.92 8.24 -40.82 -0.34 1.59 16 36 H 0.10 0.56 7.90 -51.93 -0.41 0.15 16 37 H 0.08 0.48 8.13 -51.92 -0.42 0.06 16 38 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 39 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 40 H 0.40 1.70 8.80 -40.82 -0.36 1.35 16 41 H 0.11 0.59 8.09 -51.93 -0.42 0.17 16 42 H 0.11 0.45 7.97 -51.93 -0.41 0.04 16 43 H 0.09 1.64 8.11 -51.92 -0.42 1.22 16 44 H 0.09 1.66 7.40 -51.91 -0.38 1.27 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 390.87 15.07 5.89 5.89 Total: -1.00 -39.35 390.87 -8.19 -47.54 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.81 Total: -1.28 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 0.14 Total: 3.78 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.45 Total: -43.67 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: 0.27 Total: -24.60 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.35 -8.19 -47.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737719203.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.673 kcal (2) G-P(sol) polarization free energy of solvation -39.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds