Wall clock time and date at job start Wed Apr 1 2020 02:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99389 * 2 1 4 4 O 1.21277 * 120.00476 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99685 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47522 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99567 * 7.21682 * 6 5 3 8 8 N 1.34774 * 120.00642 * 187.21591 * 6 5 3 9 9 C 1.46503 * 119.99496 * 8.66799 * 8 6 5 10 10 C 1.53002 * 109.46625 * 269.99639 * 9 8 6 11 11 N 1.46506 * 109.46990 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00345 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00401 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.47318 * 180.02562 * 14 12 11 16 16 C 1.76194 * 100.00085 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00169 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99774 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47344 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.46919 * 209.99906 * 20 18 16 23 23 H 1.48506 * 109.47032 * 329.99433 * 20 18 16 24 24 C 1.46493 * 120.00519 * 188.66215 * 8 6 5 25 25 C 1.53003 * 117.49715 * 15.62761 * 24 8 6 26 26 C 1.52998 * 59.99974 * 252.50678 * 25 24 8 27 27 H 1.08992 * 109.47425 * 299.99794 * 1 2 3 28 28 H 1.08998 * 109.47066 * 60.00167 * 1 2 3 29 29 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00088 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46852 * 60.00161 * 5 3 2 32 32 H 1.09000 * 109.47268 * 300.00771 * 5 3 2 33 33 H 1.08995 * 109.47739 * 29.99661 * 9 8 6 34 34 H 1.09000 * 109.46916 * 150.00017 * 9 8 6 35 35 H 1.09000 * 109.47502 * 299.99833 * 10 9 8 36 36 H 1.09000 * 109.47165 * 60.00531 * 10 9 8 37 37 H 0.97005 * 119.99652 * 0.02562 * 11 10 9 38 38 H 1.09000 * 109.46563 * 300.00166 * 14 12 11 39 39 H 1.08994 * 109.47363 * 59.99965 * 14 12 11 40 40 H 0.97002 * 119.99667 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55310 * 161.33385 * 24 8 6 42 42 H 1.09001 * 117.49961 * 359.97438 * 25 24 8 43 43 H 1.09002 * 117.49976 * 145.02100 * 25 24 8 44 44 H 1.08995 * 117.50272 * 252.50634 * 26 25 24 45 45 H 1.09003 * 117.51686 * 107.48194 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1482 2.5881 0.0011 7 8 3.3678 3.5071 0.1330 8 7 5.4645 2.8376 -0.1449 9 6 6.3820 1.7498 -0.4930 10 6 6.9086 1.0977 0.7870 11 7 7.8266 0.0102 0.4391 12 6 8.4168 -0.7110 1.4126 13 8 8.1877 -0.4600 2.5769 14 6 9.3615 -1.8292 1.0547 15 16 9.9844 -2.6007 2.5690 16 6 11.0317 -3.8359 1.8746 17 1 11.1235 -3.9255 0.8021 18 6 11.7387 -4.6937 2.7057 19 7 12.5215 -5.6161 2.1868 20 14 11.5794 -4.5392 4.5604 21 1 10.4650 -5.3984 5.0348 22 1 12.8461 -4.9714 5.2037 23 1 11.3005 -3.1249 4.9172 24 6 5.9780 4.1965 0.0442 25 6 5.0685 5.2033 0.7515 26 6 5.3139 5.3202 -0.7541 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0095 0.6534 -0.8892 32 1 4.0089 0.6537 0.8907 33 1 5.8538 1.0056 -1.0890 34 1 7.2176 2.1491 -1.0677 35 1 7.4369 1.8418 1.3831 36 1 6.0730 0.6984 1.3617 37 1 8.0101 -0.1903 -0.4921 38 1 8.8338 -2.5737 0.4586 39 1 10.1968 -1.4293 0.4801 40 1 13.0153 -6.2158 2.7677 41 1 7.0502 4.2732 0.2246 42 1 4.0880 4.8546 1.0757 43 1 5.5423 5.9424 1.3976 44 1 5.9491 6.1362 -1.0987 45 1 4.4952 5.0483 -1.4204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737874955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:48 Heat of formation + Delta-G solvation = -60.767576 kcal Electronic energy + Delta-G solvation = -27091.184576 eV Core-core repulsion = 23043.936530 eV Total energy + Delta-G solvation = -4047.248046 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09971 -39.59687 -39.29491 -36.74484 -35.94825 -34.83394 -33.94055 -32.49325 -31.09608 -30.29828 -28.00569 -26.86365 -25.66916 -23.63054 -23.28924 -22.51825 -21.01202 -20.76084 -19.36852 -18.02651 -17.83933 -17.50339 -16.65584 -16.33639 -16.30578 -16.03380 -15.92773 -15.48853 -15.04379 -14.93229 -14.65930 -14.25096 -14.03138 -13.91264 -13.72101 -13.53521 -13.31653 -13.11738 -12.84941 -12.75572 -12.63675 -12.51775 -12.29637 -11.76662 -11.51534 -11.32604 -11.29011 -11.05739 -10.68819 -10.62354 -10.30602 -9.92148 -9.70626 -9.53019 -9.47956 -9.18157 -9.05077 -8.78312 -8.56981 -6.98716 -6.34338 -4.06797 2.13741 2.18083 2.36168 2.68581 2.84119 2.92808 3.26807 3.30142 3.45979 3.57856 3.63987 3.96405 4.25926 4.27943 4.35679 4.41629 4.61509 4.63643 4.67609 4.76830 4.79324 4.82370 4.90487 4.97168 5.04809 5.14027 5.19069 5.22840 5.40192 5.42706 5.52726 5.63735 5.67306 5.79690 5.91821 6.00074 6.07296 6.30538 6.39023 6.88592 7.07851 7.42344 7.79394 7.88594 7.95585 8.34395 8.35930 9.11766 10.74792 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.002166 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.456656 B =12926.871971 C =14310.491867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.512 3.488 4 O -0.495 6.495 5 C -0.171 4.171 6 C 0.518 3.482 7 O -0.481 6.481 8 N -0.586 5.586 9 C 0.101 3.899 10 C 0.101 3.899 11 N -0.737 5.737 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.124 4.124 15 S -0.142 6.142 16 C -0.522 4.522 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.879 5.879 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.070 3.930 25 C -0.190 4.190 26 C -0.185 4.185 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.402 0.598 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.401 0.599 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.271 0.729 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 14.528 -9.963 25.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.394 5.394 3 C 0.296 3.704 4 O -0.368 6.368 5 C -0.214 4.214 6 C 0.305 3.695 7 O -0.353 6.353 8 N -0.319 5.319 9 C -0.023 4.023 10 C -0.025 4.025 11 N -0.393 5.393 12 C 0.317 3.683 13 O -0.390 6.390 14 C -0.275 4.275 15 S 0.085 5.915 16 C -0.670 4.670 17 H 0.107 0.893 18 C -0.113 4.113 19 N -0.516 5.516 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.034 4.034 25 C -0.227 4.227 26 C -0.223 4.223 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.236 0.764 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.333 16.097 -7.908 26.371 hybrid contribution 0.951 -1.256 -1.088 1.915 sum -18.383 14.841 -8.996 25.281 Atomic orbital electron populations 1.21518 0.79315 1.02270 1.02372 1.45789 1.07904 1.08547 1.77134 1.19984 0.89053 0.84078 0.77286 1.90861 1.69416 1.30443 1.46033 1.21768 0.95029 0.97597 1.06985 1.19985 0.81594 0.90645 0.77302 1.90724 1.54138 1.44814 1.45671 1.47162 1.06456 1.07848 1.70444 1.21775 0.94538 0.89631 0.96377 1.21726 0.93794 0.89904 0.97029 1.45830 1.48128 1.35399 1.09909 1.20307 0.80286 0.82330 0.85333 1.90724 1.61438 1.67950 1.18857 1.23275 1.00643 0.98451 1.05111 1.84834 1.57890 1.41500 1.07317 1.22301 1.30106 1.17682 0.96895 0.89350 1.24718 0.93541 0.93748 0.99316 1.69936 1.27208 1.18316 1.36125 0.86737 0.78551 0.81604 0.84973 1.19202 1.19917 1.15920 1.21712 0.96919 0.78264 1.06538 1.23774 1.03698 1.00108 0.95119 1.23253 1.03537 1.00072 0.95455 0.92195 0.92270 0.90545 0.76423 0.86124 0.85521 0.89411 0.88882 0.90901 0.91379 0.76519 0.88400 0.88356 0.91895 0.85119 0.84837 0.89055 0.88655 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 10.70 59.85 0.64 1.17 16 2 N -0.74 -4.77 5.71 -67.08 -0.38 -5.15 16 3 C 0.51 4.96 7.82 -10.98 -0.09 4.88 16 4 O -0.50 -7.31 14.21 -18.90 -0.27 -7.57 16 5 C -0.17 -1.18 5.06 -29.04 -0.15 -1.32 16 6 C 0.52 5.20 7.43 -10.99 -0.08 5.12 16 7 O -0.48 -6.78 9.99 -18.91 -0.19 -6.96 16 8 N -0.59 -4.64 2.84 -166.11 -0.47 -5.11 16 9 C 0.10 0.53 5.30 -4.04 -0.02 0.51 16 10 C 0.10 0.84 5.98 -4.04 -0.02 0.81 16 11 N -0.74 -7.02 5.56 -60.29 -0.33 -7.36 16 12 C 0.53 8.21 7.85 -10.99 -0.09 8.12 16 13 O -0.52 -10.21 15.86 5.55 0.09 -10.12 16 14 C -0.12 -2.15 6.16 36.00 0.22 -1.93 16 15 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 16 C -0.52 -14.47 10.04 30.94 0.31 -14.16 16 17 H 0.09 2.54 8.03 -52.48 -0.42 2.12 16 18 C 0.10 2.72 5.50 -17.43 -0.10 2.62 16 19 N -0.88 -25.86 13.97 55.49 0.78 -25.09 16 20 Si 0.86 21.18 27.74 -169.99 -4.72 16.47 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16 24 C 0.07 0.58 6.60 -67.93 -0.45 0.13 16 25 C -0.19 -1.87 9.62 -26.73 -0.26 -2.12 16 26 C -0.18 -1.64 9.88 -26.73 -0.26 -1.90 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.40 1.36 8.83 -40.82 -0.36 1.00 16 31 H 0.12 0.43 6.79 -51.92 -0.35 0.08 16 32 H 0.13 0.69 7.11 -51.93 -0.37 0.32 16 33 H 0.09 0.27 6.34 -51.93 -0.33 -0.06 16 34 H 0.09 0.37 8.07 -51.93 -0.42 -0.04 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.62 7.01 -51.93 -0.36 0.25 16 37 H 0.40 2.47 8.47 -40.82 -0.35 2.13 16 38 H 0.10 1.54 8.14 -51.92 -0.42 1.12 16 39 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.13 1.71 5.27 -51.99 -0.27 1.43 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.10 1.05 7.57 -51.93 -0.39 0.65 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -39.28 388.38 -8.57 -47.85 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.59 Total: 0.68 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.34 Total: 1.93 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.41 Total: -42.71 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.37 Total: -24.66 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.72 Total: 16.47 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -39.28 -8.57 -47.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737874955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.921 kcal (2) G-P(sol) polarization free energy of solvation -39.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds