Wall clock time and date at job start Wed Apr 1 2020 02:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34781 * 119.99389 * 2 1 4 4 O 1.21277 * 120.00476 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99685 * 179.97438 * 3 2 1 6 6 C 1.50694 * 109.47522 * 180.02562 * 5 3 2 7 7 O 1.21284 * 119.99567 * 7.21682 * 6 5 3 8 8 N 1.34774 * 120.00642 * 187.21591 * 6 5 3 9 9 C 1.46503 * 119.99496 * 8.66799 * 8 6 5 10 10 C 1.53002 * 109.46625 * 269.99639 * 9 8 6 11 11 N 1.46506 * 109.46990 * 180.02562 * 10 9 8 12 12 C 1.34770 * 120.00345 * 179.97438 * 11 10 9 13 13 O 1.21284 * 119.99709 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00401 * 180.02562 * 12 11 10 15 15 S 1.81004 * 109.47318 * 180.02562 * 14 12 11 16 16 C 1.76194 * 100.00085 * 179.97438 * 15 14 12 17 17 H 1.08009 * 119.99995 * 359.97438 * 16 15 14 18 18 C 1.38800 * 120.00169 * 179.97438 * 16 15 14 19 19 N 1.31631 * 119.99774 * 180.02562 * 18 16 15 20 20 Si 1.86796 * 119.99892 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47344 * 89.99561 * 20 18 16 22 22 H 1.48497 * 109.46919 * 209.99906 * 20 18 16 23 23 H 1.48506 * 109.47032 * 329.99433 * 20 18 16 24 24 C 1.46493 * 120.00519 * 188.66215 * 8 6 5 25 25 C 1.53003 * 117.49715 * 15.62761 * 24 8 6 26 26 C 1.52998 * 59.99974 * 252.50678 * 25 24 8 27 27 H 1.08992 * 109.47425 * 299.99794 * 1 2 3 28 28 H 1.08998 * 109.47066 * 60.00167 * 1 2 3 29 29 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 30 30 H 0.96997 * 120.00088 * 179.97438 * 2 1 3 31 31 H 1.09008 * 109.46852 * 60.00161 * 5 3 2 32 32 H 1.09000 * 109.47268 * 300.00771 * 5 3 2 33 33 H 1.08995 * 109.47739 * 29.99661 * 9 8 6 34 34 H 1.09000 * 109.46916 * 150.00017 * 9 8 6 35 35 H 1.09000 * 109.47502 * 299.99833 * 10 9 8 36 36 H 1.09000 * 109.47165 * 60.00531 * 10 9 8 37 37 H 0.97005 * 119.99652 * 0.02562 * 11 10 9 38 38 H 1.09000 * 109.46563 * 300.00166 * 14 12 11 39 39 H 1.08994 * 109.47363 * 59.99965 * 14 12 11 40 40 H 0.97002 * 119.99667 * 180.02562 * 19 18 16 41 41 H 1.08998 * 115.55310 * 161.33385 * 24 8 6 42 42 H 1.09001 * 117.49961 * 359.97438 * 25 24 8 43 43 H 1.09002 * 117.49976 * 145.02100 * 25 24 8 44 44 H 1.08995 * 117.50272 * 252.50634 * 26 25 24 45 45 H 1.09003 * 117.51686 * 107.48194 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5324 2.2176 0.0005 5 6 3.6458 1.1674 0.0006 6 6 4.1482 2.5881 0.0011 7 8 3.3678 3.5071 0.1330 8 7 5.4645 2.8376 -0.1449 9 6 6.3820 1.7498 -0.4930 10 6 6.9086 1.0977 0.7870 11 7 7.8266 0.0102 0.4391 12 6 8.4168 -0.7110 1.4126 13 8 8.1877 -0.4600 2.5769 14 6 9.3615 -1.8292 1.0547 15 16 9.9844 -2.6007 2.5690 16 6 11.0317 -3.8359 1.8746 17 1 11.1235 -3.9255 0.8021 18 6 11.7387 -4.6937 2.7057 19 7 12.5215 -5.6161 2.1868 20 14 11.5794 -4.5392 4.5604 21 1 10.4650 -5.3984 5.0348 22 1 12.8461 -4.9714 5.2037 23 1 11.3005 -3.1249 4.9172 24 6 5.9780 4.1965 0.0442 25 6 5.0685 5.2033 0.7515 26 6 5.3139 5.3202 -0.7541 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.9500 -0.8400 0.0004 31 1 4.0095 0.6534 -0.8892 32 1 4.0089 0.6537 0.8907 33 1 5.8538 1.0056 -1.0890 34 1 7.2176 2.1491 -1.0677 35 1 7.4369 1.8418 1.3831 36 1 6.0730 0.6984 1.3617 37 1 8.0101 -0.1903 -0.4921 38 1 8.8338 -2.5737 0.4586 39 1 10.1968 -1.4293 0.4801 40 1 13.0153 -6.2158 2.7677 41 1 7.0502 4.2732 0.2246 42 1 4.0880 4.8546 1.0757 43 1 5.5423 5.9424 1.3976 44 1 5.9491 6.1362 -1.0987 45 1 4.4952 5.0483 -1.4204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737874955.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:47 Heat of formation + Delta-G solvation = -91.356256 kcal Electronic energy + Delta-G solvation = -27092.511001 eV Core-core repulsion = 23043.936530 eV Total energy + Delta-G solvation = -4048.574471 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.80411 -40.58867 -40.17507 -37.50951 -36.72731 -35.53172 -34.84685 -34.63159 -31.78374 -31.39256 -28.91560 -27.79550 -27.41579 -24.31686 -23.94131 -23.24872 -21.85925 -21.68125 -20.15038 -19.78948 -18.47871 -18.29275 -17.67111 -17.30744 -17.09518 -16.98829 -16.79717 -16.72823 -16.47128 -15.75154 -15.58449 -15.29400 -15.12814 -14.90864 -14.70955 -14.61980 -14.36221 -14.04930 -13.83962 -13.60529 -13.41993 -13.30701 -13.08118 -13.06639 -12.98980 -12.62635 -12.51982 -12.17109 -11.97552 -11.84327 -11.30610 -11.14182 -11.06159 -11.00105 -10.47495 -10.32585 -10.11934 -10.09613 -9.47767 -8.94866 -8.48599 -6.18245 1.02962 1.33446 1.44065 1.49833 1.53518 1.63340 1.64913 1.68804 2.24466 2.27764 2.49989 2.77530 2.90098 2.95385 3.33024 3.75432 3.84423 3.88370 3.98002 4.03136 4.11524 4.17030 4.19570 4.32711 4.34186 4.47364 4.52718 4.56448 4.61023 4.62278 4.80043 4.83328 4.93889 4.99857 5.07791 5.34459 5.41539 5.44684 5.69118 5.74002 6.15402 6.26627 6.53622 6.56198 6.97410 7.13742 7.27439 7.33191 8.63502 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.002166 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.456656 B =12926.871971 C =14310.491867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.725 5.725 3 C 0.504 3.496 4 O -0.557 6.557 5 C -0.163 4.163 6 C 0.507 3.493 7 O -0.529 6.529 8 N -0.582 5.582 9 C 0.106 3.894 10 C 0.103 3.897 11 N -0.704 5.704 12 C 0.537 3.463 13 O -0.565 6.565 14 C -0.110 4.110 15 S -0.183 6.183 16 C -0.525 4.525 17 H 0.065 0.935 18 C 0.044 3.956 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.263 1.263 23 H -0.237 1.237 24 C 0.078 3.922 25 C -0.209 4.209 26 C -0.180 4.180 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.420 0.580 31 H 0.163 0.837 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.057 0.943 36 H 0.064 0.936 37 H 0.422 0.578 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.276 0.724 41 H 0.157 0.843 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.116 0.884 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.827 14.132 -11.106 25.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.379 5.379 3 C 0.289 3.711 4 O -0.434 6.434 5 C -0.205 4.205 6 C 0.295 3.705 7 O -0.405 6.405 8 N -0.314 5.314 9 C -0.017 4.017 10 C -0.023 4.023 11 N -0.360 5.360 12 C 0.322 3.678 13 O -0.443 6.443 14 C -0.261 4.261 15 S 0.044 5.956 16 C -0.672 4.672 17 H 0.083 0.917 18 C -0.161 4.161 19 N -0.556 5.556 20 Si 0.735 3.265 21 H -0.188 1.188 22 H -0.188 1.188 23 H -0.160 1.160 24 C -0.026 4.026 25 C -0.247 4.247 26 C -0.219 4.219 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.129 0.871 30 H 0.257 0.743 31 H 0.180 0.820 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.261 0.739 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.175 0.825 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.134 0.866 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.984 15.650 -9.120 26.239 hybrid contribution 0.756 -1.078 -0.870 1.578 sum -18.228 14.572 -9.990 25.386 Atomic orbital electron populations 1.21611 0.79142 1.04082 1.01064 1.45730 1.08199 1.08574 1.75397 1.20559 0.90363 0.83895 0.76271 1.90846 1.70772 1.32693 1.49068 1.21819 0.92874 0.96035 1.09734 1.20609 0.81918 0.91509 0.76472 1.90738 1.55556 1.46497 1.47674 1.47241 1.06246 1.08331 1.69593 1.21946 0.95202 0.89499 0.95063 1.21803 0.92989 0.88918 0.98553 1.45446 1.46492 1.34087 1.09932 1.19917 0.80198 0.82248 0.85429 1.90722 1.63252 1.69345 1.20969 1.23274 1.01897 0.99436 1.01531 1.84799 1.57571 1.41036 1.12219 1.22468 1.30322 1.18463 0.95970 0.91669 1.25548 0.93471 0.93657 1.03406 1.70017 1.28414 1.19409 1.37743 0.85889 0.78947 0.81459 0.80223 1.18764 1.18770 1.16036 1.21949 0.97653 0.78283 1.04722 1.23648 1.02962 1.01907 0.96152 1.23193 1.03196 1.01268 0.94206 0.93858 0.93359 0.87081 0.74287 0.81957 0.83595 0.86117 0.86451 0.92446 0.91787 0.73948 0.86287 0.86647 0.91485 0.82542 0.88113 0.87914 0.86589 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.70 127.77 1.37 2.31 16 2 N -0.72 -8.10 5.71 -484.52 -2.77 -10.87 16 3 C 0.50 9.38 7.82 87.66 0.69 10.06 16 4 O -0.56 -17.19 14.21 20.37 0.29 -16.90 16 5 C -0.16 -1.81 5.06 29.10 0.15 -1.66 16 6 C 0.51 9.61 7.43 87.66 0.65 10.26 16 7 O -0.53 -15.58 9.99 20.34 0.20 -15.38 16 8 N -0.58 -7.72 2.84 -797.85 -2.26 -9.98 16 9 C 0.11 0.60 5.30 86.38 0.46 1.06 16 10 C 0.10 1.29 5.98 86.38 0.52 1.81 16 11 N -0.70 -10.23 5.56 -463.05 -2.57 -12.80 16 12 C 0.54 14.90 7.85 87.66 0.69 15.59 16 13 O -0.56 -21.31 15.86 -3.04 -0.05 -21.36 16 14 C -0.11 -3.52 6.16 71.24 0.44 -3.08 16 15 S -0.18 -8.59 18.55 -56.49 -1.05 -9.64 16 16 C -0.52 -28.96 10.04 67.95 0.68 -28.28 16 17 H 0.07 3.77 8.03 -2.91 -0.02 3.75 16 18 C 0.04 2.52 5.50 84.86 0.47 2.98 16 19 N -0.92 -54.23 13.97 21.65 0.30 -53.93 16 20 Si 0.91 43.55 27.74 68.60 1.90 45.46 16 21 H -0.26 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.24 -11.25 6.74 99.48 0.67 -10.58 16 24 C 0.08 1.14 6.60 44.99 0.30 1.44 16 25 C -0.21 -4.18 9.62 30.59 0.29 -3.88 16 26 C -0.18 -3.07 9.88 30.59 0.30 -2.77 16 27 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.42 1.55 8.83 -92.71 -0.82 0.73 16 31 H 0.16 0.36 6.79 -2.38 -0.02 0.34 16 32 H 0.15 1.09 7.11 -2.39 -0.02 1.08 16 33 H 0.12 -0.02 6.34 -2.39 -0.02 -0.04 16 34 H 0.12 0.24 8.07 -2.39 -0.02 0.22 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 0.93 7.01 -2.39 -0.02 0.91 16 37 H 0.42 2.77 8.47 -92.70 -0.79 1.99 16 38 H 0.12 3.33 8.14 -2.40 -0.02 3.31 16 39 H 0.12 3.32 8.14 -2.40 -0.02 3.30 16 40 H 0.28 15.13 8.31 -92.71 -0.77 14.35 16 41 H 0.16 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.10 2.80 5.27 -3.40 -0.02 2.78 16 43 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.62 7.57 -2.39 -0.02 1.60 16 Total: -1.00 -91.73 388.38 0.38 -91.34 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -0.61 Total: 8.22 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 6.99 Total: 5.84 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -7.30 Total: -87.58 kcal Atomic # 8 Polarization: -54.08 SS G_CDS: 0.44 Total: -53.64 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.90 Total: 45.46 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.05 Total: -9.64 kcal Total: -91.73 0.38 -91.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737874955.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.014 kcal (2) G-P(sol) polarization free energy of solvation -91.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds