Wall clock time and date at job start Wed Apr 1 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99250 * 2 1 4 4 O 1.21278 * 119.99391 * 179.97438 * 3 2 1 5 5 C 1.50693 * 120.00499 * 0.02562 * 3 2 1 6 6 S 1.81001 * 109.47365 * 179.97438 * 5 3 2 7 7 C 1.76201 * 100.00217 * 179.97438 * 6 5 3 8 8 H 1.08004 * 119.99923 * 0.02562 * 7 6 5 9 9 C 1.38799 * 120.00067 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99822 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99765 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47228 * 90.00241 * 11 9 7 13 13 H 1.48499 * 109.46837 * 210.00031 * 11 9 7 14 14 H 1.48504 * 109.46886 * 329.99626 * 11 9 7 15 15 C 1.46494 * 120.00263 * 180.02562 * 2 1 3 16 16 H 1.09000 * 109.46817 * 183.14910 * 15 2 1 17 17 C 1.53000 * 109.47374 * 63.15045 * 15 2 1 18 18 N 1.46494 * 109.47062 * 54.99680 * 17 15 2 19 19 C 1.34782 * 120.00064 * 179.97438 * 18 17 15 20 20 O 1.21286 * 119.99567 * 0.02562 * 19 18 17 21 21 C 1.50698 * 120.00427 * 180.02562 * 19 18 17 22 22 C 1.50694 * 109.47103 * 180.02562 * 21 19 18 23 23 N 1.34782 * 119.99874 * 180.02562 * 22 21 19 24 24 O 1.21282 * 120.00409 * 359.97438 * 22 21 19 25 25 C 1.53000 * 109.47004 * 303.14973 * 15 2 1 26 26 C 1.53006 * 117.49779 * 253.33291 * 25 15 2 27 27 C 1.52997 * 117.49757 * 184.67585 * 25 15 2 28 28 H 1.09003 * 109.47220 * 84.35777 * 1 2 3 29 29 H 1.09002 * 109.46700 * 204.35567 * 1 2 3 30 30 H 1.08998 * 109.47736 * 324.35374 * 1 2 3 31 31 H 1.08998 * 109.47535 * 300.00051 * 5 3 2 32 32 H 1.09003 * 109.47036 * 59.99289 * 5 3 2 33 33 H 0.97008 * 119.99764 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.47115 * 175.00029 * 17 15 2 35 35 H 1.09006 * 109.46587 * 294.99794 * 17 15 2 36 36 H 0.96997 * 120.00480 * 0.02562 * 18 17 15 37 37 H 1.09000 * 109.46471 * 300.00378 * 21 19 18 38 38 H 1.08996 * 109.47070 * 59.99909 * 21 19 18 39 39 H 0.97009 * 119.99835 * 359.97438 * 23 22 21 40 40 H 0.96991 * 120.00090 * 179.97438 * 23 22 21 41 41 H 1.08995 * 115.55479 * 38.99809 * 25 15 2 42 42 H 1.09006 * 117.49958 * 359.97438 * 26 25 15 43 43 H 1.08992 * 117.50072 * 145.01965 * 26 25 15 44 44 H 1.09006 * 117.49424 * 214.97889 * 27 25 15 45 45 H 1.08997 * 117.50395 * 359.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3515 1.1673 0.0005 5 6 1.3852 2.4723 0.0006 6 16 2.5613 3.8482 0.0012 7 6 1.4412 5.2083 0.0010 8 1 0.3758 5.0305 0.0011 9 6 1.9278 6.5082 0.0019 10 7 3.2261 6.7248 0.0024 11 14 0.7402 7.9501 0.0025 12 1 0.4251 8.3314 1.4027 13 1 1.3616 9.1034 -0.6967 14 1 -0.5102 7.5617 -0.6982 15 6 2.1975 -1.2686 -0.0006 16 1 3.2678 -1.0702 0.0560 17 6 1.8884 -2.0356 -1.2879 18 7 2.1871 -1.1881 -2.4448 19 6 1.9907 -1.6577 -3.6929 20 8 1.5662 -2.7818 -3.8579 21 6 2.2984 -0.7861 -4.8831 22 6 1.9938 -1.5415 -6.1510 23 7 2.1943 -0.9566 -7.3486 24 8 1.5691 -2.6761 -6.0938 25 6 1.7694 -2.1053 1.2068 26 6 2.7594 -2.2298 2.3667 27 6 2.5032 -3.4262 1.4468 28 1 -0.3634 0.1010 -1.0227 29 1 -0.3633 -0.9362 0.4238 30 1 -0.3634 0.8351 0.5989 31 1 0.7582 2.5303 -0.8891 32 1 0.7588 2.5298 0.8908 33 1 3.5662 7.6333 0.0034 34 1 2.5003 -2.9366 -1.3298 35 1 0.8339 -2.3114 -1.3020 36 1 2.5268 -0.2892 -2.3129 37 1 1.6865 0.1150 -4.8414 38 1 3.3528 -0.5102 -4.8685 39 1 2.5343 -0.0492 -7.3943 40 1 1.9986 -1.4429 -8.1646 41 1 0.7083 -2.0670 1.4528 42 1 3.7159 -1.7161 2.2695 43 1 2.3496 -2.2740 3.3757 44 1 1.9247 -4.2569 1.8511 45 1 3.2906 -3.6994 0.7445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738755376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:37 Heat of formation + Delta-G solvation = -80.230007 kcal Electronic energy + Delta-G solvation = -27826.746389 eV Core-core repulsion = 23778.654389 eV Total energy + Delta-G solvation = -4048.092000 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.53728 -39.91369 -38.51563 -37.67746 -35.36807 -34.27694 -33.78524 -32.49594 -31.24979 -29.96981 -28.19076 -26.76991 -25.55015 -24.09732 -22.51457 -21.51874 -20.80486 -20.12449 -19.30666 -17.83867 -17.74213 -17.40088 -17.09023 -16.37965 -16.18616 -16.06870 -15.54748 -15.42365 -14.87052 -14.83573 -14.59768 -14.26499 -13.93382 -13.63336 -13.51643 -13.27365 -13.04385 -12.94544 -12.59806 -12.47741 -12.30036 -12.12593 -11.91701 -11.68701 -11.39525 -11.12148 -11.08670 -10.83417 -10.63048 -10.37775 -10.27508 -9.86893 -9.86431 -9.57204 -9.49063 -9.12995 -9.11334 -8.66578 -8.31273 -6.57987 -6.28455 -3.99513 2.44059 2.64513 2.69888 2.84327 2.89464 3.17407 3.20156 3.25109 3.44912 3.54086 3.65464 4.13931 4.34527 4.44052 4.61214 4.72796 4.78750 4.84813 4.94743 4.97369 5.04401 5.06886 5.07752 5.13251 5.19819 5.41591 5.43934 5.50225 5.51391 5.65707 5.70529 5.77188 5.82067 5.95143 6.01459 6.05890 6.30119 6.55136 6.56430 7.07368 7.37947 7.41478 7.53295 8.06329 8.23157 8.28506 8.40527 9.17349 10.78816 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008242 B = 0.003242 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3396.535801 B = 8633.319816 C =11292.940445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.615 5.615 3 C 0.533 3.467 4 O -0.516 6.516 5 C -0.151 4.151 6 S -0.060 6.060 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.075 3.925 10 N -0.867 5.867 11 Si 0.917 3.083 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.160 3.840 16 H 0.109 0.891 17 C 0.118 3.882 18 N -0.727 5.727 19 C 0.514 3.486 20 O -0.502 6.502 21 C -0.171 4.171 22 C 0.518 3.482 23 N -0.860 5.860 24 O -0.501 6.501 25 C -0.165 4.165 26 C -0.169 4.169 27 C -0.172 4.172 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.401 0.599 40 H 0.402 0.598 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.566 -15.833 -5.142 17.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.351 5.351 3 C 0.322 3.678 4 O -0.390 6.390 5 C -0.301 4.301 6 S 0.167 5.833 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.055 3.945 16 H 0.127 0.873 17 C -0.007 4.007 18 N -0.382 5.382 19 C 0.298 3.702 20 O -0.375 6.375 21 C -0.214 4.214 22 C 0.300 3.700 23 N -0.426 5.426 24 O -0.373 6.373 25 C -0.185 4.185 26 C -0.206 4.206 27 C -0.210 4.210 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.239 0.761 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.229 0.771 40 H 0.233 0.767 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.113 0.887 44 H 0.115 0.885 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.223 -17.275 -5.021 18.127 hybrid contribution -2.028 1.872 -0.206 2.768 sum -4.251 -15.403 -5.227 16.812 Atomic orbital electron populations 1.21759 0.79622 1.03121 1.01958 1.47869 1.06899 1.04982 1.75319 1.20411 0.87961 0.84548 0.74929 1.90703 1.13602 1.86702 1.48030 1.23564 1.04599 0.97105 1.04843 1.85367 1.07926 0.93297 1.96733 1.22852 0.94296 0.92195 1.59090 0.90962 1.24975 0.95649 0.98361 0.94468 1.70009 1.11732 1.21711 1.46774 0.86188 0.80288 0.80742 0.78413 1.20257 1.20736 1.19680 1.20791 0.98831 0.82892 0.91949 0.87280 1.21612 1.01786 0.93494 0.83784 1.45919 1.68154 1.18914 1.05183 1.19904 0.78848 0.87771 0.83719 1.90850 1.42723 1.18786 1.85124 1.21612 1.06318 1.00776 0.92669 1.19987 0.78026 0.86984 0.84988 1.43869 1.70868 1.19791 1.08086 1.90900 1.42290 1.17527 1.86584 1.22474 0.98691 0.99690 0.97602 1.23026 1.00754 1.01663 0.95172 1.22964 1.03194 0.91457 1.03352 0.92624 0.91003 0.90764 0.89258 0.89197 0.92155 0.90496 0.91139 0.76108 0.85744 0.85769 0.77067 0.76739 0.87144 0.88302 0.88651 0.88498 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 9.37 59.85 0.56 1.31 16 2 N -0.61 -7.47 2.29 -173.94 -0.40 -7.87 16 3 C 0.53 8.82 7.20 -10.99 -0.08 8.75 16 4 O -0.52 -10.27 15.19 5.56 0.08 -10.19 16 5 C -0.15 -2.78 4.78 36.00 0.17 -2.60 16 6 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 7 C -0.54 -14.54 9.50 30.94 0.29 -14.24 16 8 H 0.07 1.86 7.80 -52.48 -0.41 1.45 16 9 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 10 N -0.87 -25.14 13.22 55.49 0.73 -24.40 16 11 Si 0.92 20.60 29.55 -169.99 -5.02 15.58 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 14 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.16 1.74 2.38 -67.93 -0.16 1.58 16 16 H 0.11 1.41 6.70 -51.93 -0.35 1.07 16 17 C 0.12 1.27 4.85 -4.05 -0.02 1.25 16 18 N -0.73 -8.26 5.39 -60.29 -0.32 -8.59 16 19 C 0.51 6.54 7.82 -10.98 -0.09 6.46 16 20 O -0.50 -8.60 14.18 -18.96 -0.27 -8.87 16 21 C -0.17 -1.53 6.19 -29.04 -0.18 -1.71 16 22 C 0.52 5.69 8.09 -10.99 -0.09 5.61 16 23 N -0.86 -5.58 8.87 31.22 0.28 -5.30 16 24 O -0.50 -8.27 15.02 -18.96 -0.28 -8.56 16 25 C -0.17 -1.52 5.04 -90.62 -0.46 -1.98 16 26 C -0.17 -1.58 10.18 -26.69 -0.27 -1.85 16 27 C -0.17 -1.39 9.88 -26.70 -0.26 -1.65 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.55 6.26 -51.93 -0.33 0.22 16 30 H 0.07 0.71 6.68 -51.93 -0.35 0.37 16 31 H 0.09 1.51 8.11 -51.92 -0.42 1.09 16 32 H 0.09 1.57 7.41 -51.91 -0.38 1.19 16 33 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.08 0.84 7.79 -51.93 -0.40 0.43 16 35 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 36 H 0.40 4.62 7.70 -40.82 -0.31 4.31 16 37 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 1.37 8.83 -40.82 -0.36 1.01 16 40 H 0.40 2.31 8.93 -40.82 -0.36 1.95 16 41 H 0.11 0.93 6.48 -51.93 -0.34 0.59 16 42 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.77 7.96 -51.93 -0.41 0.36 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -38.11 392.05 -8.69 -46.81 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.51 Total: 6.35 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -0.68 Total: 2.87 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: 0.29 Total: -46.16 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.47 Total: -27.62 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.11 -8.69 -46.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738755376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.424 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds