Wall clock time and date at job start Wed Apr 1 2020 01:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34561 * 124.43288 * 2 1 4 4 O 1.21277 * 124.92339 * 359.54744 * 3 2 1 5 5 C 1.51285 * 110.13522 * 179.63958 * 3 2 1 6 6 C 1.54632 * 104.19827 * 343.67541 * 5 3 2 7 7 C 1.46756 * 124.34547 * 179.97438 * 2 1 3 8 8 H 1.08994 * 110.24911 * 77.93201 * 7 2 1 9 9 C 1.50706 * 110.24904 * 316.02309 * 7 2 1 10 10 O 1.21281 * 119.99699 * 342.62839 * 9 7 2 11 11 N 1.34773 * 120.00080 * 162.63330 * 9 7 2 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46954 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99948 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99834 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47191 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00149 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00170 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00200 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99776 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46995 * 89.99376 * 24 22 20 26 26 H 1.48501 * 109.46991 * 209.99446 * 24 22 20 27 27 H 1.48501 * 109.47207 * 329.99693 * 24 22 20 28 28 H 1.09000 * 109.47557 * 270.08527 * 1 2 3 29 29 H 1.09005 * 109.46894 * 30.07673 * 1 2 3 30 30 H 1.08997 * 109.47683 * 150.07619 * 1 2 3 31 31 H 1.08997 * 110.48714 * 224.99809 * 5 3 2 32 32 H 1.09001 * 110.48515 * 102.35225 * 5 3 2 33 33 H 1.08998 * 110.96784 * 266.68217 * 6 5 3 34 34 H 1.09002 * 111.00056 * 142.92803 * 6 5 3 35 35 H 0.97005 * 120.00161 * 359.72088 * 11 9 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 39 39 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 40 40 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 41 41 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 42 42 H 0.96998 * 119.99902 * 359.97438 * 15 14 13 43 43 H 1.09004 * 109.47303 * 299.99751 * 18 16 15 44 44 H 1.09006 * 109.47511 * 59.99630 * 18 16 15 45 45 H 0.97002 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1098 0.0000 4 8 1.7983 2.2447 -0.0079 5 6 3.6918 0.7362 0.0089 6 6 3.7019 -0.7500 0.4356 7 6 2.2930 -1.2117 0.0005 8 1 2.3293 -1.6442 -0.9992 9 6 1.7472 -2.2160 0.9828 10 8 0.9706 -1.8613 1.8442 11 7 2.1221 -3.5081 0.9039 12 6 1.5910 -4.4844 1.8585 13 6 2.1660 -5.8675 1.5464 14 6 1.6118 -6.8870 2.5437 15 7 2.1629 -8.2112 2.2452 16 6 1.8123 -9.2724 2.9987 17 8 1.0411 -9.1309 3.9239 18 6 2.3787 -10.6346 2.6913 19 16 1.7233 -11.8407 3.8711 20 6 2.5257 -13.2997 3.2949 21 1 3.1910 -13.2505 2.4455 22 6 2.3037 -14.5121 3.9332 23 7 2.9027 -15.6021 3.5024 24 14 1.1536 -14.5971 5.4027 25 1 -0.2283 -14.8737 4.9345 26 1 1.5943 -15.6836 6.3140 27 1 1.1804 -13.3014 6.1279 28 1 -0.3634 0.0015 1.0276 29 1 -0.3633 0.8893 -0.5151 30 1 -0.3634 -0.8906 -0.5126 31 1 4.2361 1.3442 0.7316 32 1 4.1206 0.8502 -0.9867 33 1 3.8287 -0.8453 1.5140 34 1 4.4751 -1.3040 -0.0966 35 1 2.7401 -3.7925 0.2125 36 1 1.8729 -4.1935 2.8704 37 1 0.5044 -4.5162 1.7791 38 1 1.8840 -6.1583 0.5345 39 1 3.2526 -5.8356 1.6259 40 1 1.8941 -6.5960 3.5555 41 1 0.5253 -6.9189 2.4646 42 1 2.7794 -8.3244 1.5050 43 1 2.0967 -10.9256 1.6794 44 1 3.4654 -10.6028 2.7707 45 1 2.7479 -16.4493 3.9487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001742745651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:17 Heat of formation + Delta-G solvation = -109.335689 kcal Electronic energy + Delta-G solvation = -25922.708334 eV Core-core repulsion = 21873.354217 eV Total energy + Delta-G solvation = -4049.354117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.47180 -39.71899 -39.33310 -36.94687 -36.34623 -34.74471 -33.36553 -32.47626 -31.94115 -29.70076 -28.67021 -27.14702 -25.74867 -25.38349 -23.20430 -22.28917 -21.24780 -20.56392 -19.97060 -18.29197 -17.85966 -17.49197 -16.72989 -16.49446 -16.47796 -16.35516 -15.87545 -15.51020 -15.20318 -14.96858 -14.76548 -14.47530 -14.24856 -14.04355 -13.85112 -13.46353 -13.33603 -13.16434 -13.06035 -12.84047 -12.64341 -12.56695 -12.47787 -12.14510 -12.09150 -11.82635 -11.49250 -11.30065 -11.03743 -10.67904 -10.62424 -10.33035 -9.89370 -9.71038 -9.61930 -9.23408 -9.10771 -9.02581 -8.54477 -6.96197 -6.32523 -4.04710 1.89099 1.98324 2.25851 2.59384 2.75426 2.89574 3.26080 3.31196 3.47909 3.59405 3.62889 3.66871 3.94607 4.19314 4.29577 4.30251 4.43404 4.44490 4.50868 4.64676 4.72111 4.78405 4.95865 5.05118 5.06685 5.11911 5.13989 5.14530 5.20143 5.22646 5.37177 5.45328 5.61290 5.70707 5.71642 5.77995 5.84072 5.94844 6.40104 6.48731 6.81288 7.49630 7.52973 7.63800 7.90389 8.37492 8.40321 9.13702 10.76635 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.001342 C = 0.001320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.593490 B =20857.535054 C =21211.657516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.603 5.603 3 C 0.519 3.481 4 O -0.526 6.526 5 C -0.153 4.153 6 C -0.121 4.121 7 C 0.114 3.886 8 H 0.106 0.894 9 C 0.505 3.495 10 O -0.521 6.521 11 N -0.725 5.725 12 C 0.122 3.878 13 C -0.143 4.143 14 C 0.124 3.876 15 N -0.738 5.738 16 C 0.530 3.470 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.523 4.523 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 30.137 -12.528 32.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.338 5.338 3 C 0.306 3.694 4 O -0.402 6.402 5 C -0.193 4.193 6 C -0.159 4.159 7 C 0.005 3.995 8 H 0.124 0.876 9 C 0.289 3.711 10 O -0.395 6.395 11 N -0.378 5.378 12 C -0.002 4.002 13 C -0.181 4.181 14 C -0.001 4.001 15 N -0.393 5.393 16 C 0.316 3.684 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.106 0.894 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.237 0.763 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.571 31.051 -10.310 32.756 hybrid contribution 1.047 -0.953 -1.242 1.884 sum 2.618 30.098 -11.552 32.345 Atomic orbital electron populations 1.21586 0.77091 1.02479 1.03007 1.47898 1.06835 1.05599 1.73445 1.20893 0.89209 0.84171 0.75094 1.90750 1.78716 1.20743 1.50018 1.22366 0.94797 0.96885 1.05255 1.22622 0.93831 0.95849 1.03598 1.21657 0.92080 0.86406 0.99324 0.87646 1.20678 0.81778 0.82935 0.85740 1.90773 1.34020 1.79028 1.35694 1.45943 1.49002 1.07873 1.34975 1.21277 0.99274 0.86539 0.93128 1.21975 1.01801 0.93682 1.00633 1.21106 0.98923 0.81507 0.98524 1.45918 1.50242 1.07700 1.35439 1.20299 0.80879 0.85522 0.81697 1.90714 1.34150 1.85168 1.29139 1.23278 1.04346 0.94597 1.05274 1.84821 1.63237 1.02460 1.41019 1.22311 1.32490 0.92178 1.20051 0.89385 1.24708 0.95153 0.94409 0.96964 1.69934 1.41858 0.99243 1.40603 0.86739 0.81534 0.80445 0.83162 1.19187 1.19900 1.15929 0.91329 0.90688 0.91414 0.87389 0.87186 0.89215 0.87881 0.76273 0.90703 0.90737 0.90336 0.90296 0.91178 0.91196 0.76639 0.88468 0.88422 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.73 9.59 59.85 0.57 1.31 16 2 N -0.60 -4.33 3.01 -173.96 -0.52 -4.86 16 3 C 0.52 4.38 8.03 -10.80 -0.09 4.29 16 4 O -0.53 -6.73 17.60 5.56 0.10 -6.64 16 5 C -0.15 -0.56 6.86 -26.74 -0.18 -0.74 16 6 C -0.12 -0.25 6.68 -25.08 -0.17 -0.41 16 7 C 0.11 0.44 3.71 -68.14 -0.25 0.19 16 8 H 0.11 0.11 8.14 -51.93 -0.42 -0.31 16 9 C 0.50 3.12 6.71 -10.98 -0.07 3.04 16 10 O -0.52 -5.62 15.01 5.56 0.08 -5.54 16 11 N -0.72 -2.67 5.56 -60.29 -0.33 -3.01 16 12 C 0.12 0.64 5.67 -4.04 -0.02 0.62 16 13 C -0.14 -0.61 5.44 -26.73 -0.15 -0.76 16 14 C 0.12 1.08 5.67 -4.04 -0.02 1.05 16 15 N -0.74 -7.88 5.56 -60.30 -0.33 -8.22 16 16 C 0.53 8.75 7.85 -10.99 -0.09 8.66 16 17 O -0.52 -10.72 15.86 5.56 0.09 -10.63 16 18 C -0.12 -2.27 6.16 36.00 0.22 -2.05 16 19 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 20 C -0.52 -14.76 10.04 30.94 0.31 -14.45 16 21 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 22 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 23 N -0.88 -26.15 13.97 55.49 0.78 -25.37 16 24 Si 0.86 21.47 27.74 -169.99 -4.72 16.75 16 25 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 28 H 0.07 0.62 7.49 -51.93 -0.39 0.23 16 29 H 0.07 0.55 7.93 -51.93 -0.41 0.14 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.28 7.91 -51.93 -0.41 -0.13 16 34 H 0.10 -0.10 8.14 -51.93 -0.42 -0.53 16 35 H 0.40 0.20 8.47 -40.82 -0.35 -0.14 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.40 2.97 8.47 -40.82 -0.35 2.63 16 43 H 0.10 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.10 1.64 8.14 -51.91 -0.42 1.21 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -40.03 394.16 -7.92 -47.96 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.98 Total: -4.33 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -0.03 Total: 3.44 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: -0.42 Total: -41.45 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.27 Total: -22.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.72 Total: 16.75 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -40.03 -7.92 -47.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742745651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.379 kcal (2) G-P(sol) polarization free energy of solvation -40.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds