Wall clock time and date at job start Wed Apr 1 2020 01:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34561 * 124.43288 * 2 1 4 4 O 1.21277 * 124.92339 * 359.54744 * 3 2 1 5 5 C 1.51285 * 110.13522 * 179.63958 * 3 2 1 6 6 C 1.54632 * 104.19827 * 343.67541 * 5 3 2 7 7 C 1.46756 * 124.34547 * 179.97438 * 2 1 3 8 8 H 1.08994 * 110.24911 * 77.93201 * 7 2 1 9 9 C 1.50706 * 110.24904 * 316.02309 * 7 2 1 10 10 O 1.21281 * 119.99699 * 342.62839 * 9 7 2 11 11 N 1.34773 * 120.00080 * 162.63330 * 9 7 2 12 12 C 1.46506 * 119.99969 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.47237 * 179.72043 * 12 11 9 14 14 C 1.52996 * 109.46929 * 179.97438 * 13 12 11 15 15 N 1.46506 * 109.46954 * 180.02562 * 14 13 12 16 16 C 1.34778 * 119.99948 * 180.02562 * 15 14 13 17 17 O 1.21281 * 120.00174 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.99834 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47191 * 179.97438 * 18 16 15 20 20 C 1.76196 * 100.00149 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00003 * 0.02562 * 20 19 18 22 22 C 1.38803 * 120.00170 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00200 * 179.97438 * 22 20 19 24 24 Si 1.86806 * 119.99776 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46995 * 89.99376 * 24 22 20 26 26 H 1.48501 * 109.46991 * 209.99446 * 24 22 20 27 27 H 1.48501 * 109.47207 * 329.99693 * 24 22 20 28 28 H 1.09000 * 109.47557 * 270.08527 * 1 2 3 29 29 H 1.09005 * 109.46894 * 30.07673 * 1 2 3 30 30 H 1.08997 * 109.47683 * 150.07619 * 1 2 3 31 31 H 1.08997 * 110.48714 * 224.99809 * 5 3 2 32 32 H 1.09001 * 110.48515 * 102.35225 * 5 3 2 33 33 H 1.08998 * 110.96784 * 266.68217 * 6 5 3 34 34 H 1.09002 * 111.00056 * 142.92803 * 6 5 3 35 35 H 0.97005 * 120.00161 * 359.72088 * 11 9 7 36 36 H 1.09001 * 109.46512 * 299.72412 * 12 11 9 37 37 H 1.08998 * 109.47174 * 59.71534 * 12 11 9 38 38 H 1.09000 * 109.46986 * 299.99958 * 13 12 11 39 39 H 1.09002 * 109.46857 * 60.00093 * 13 12 11 40 40 H 1.09000 * 109.47441 * 299.99910 * 14 13 12 41 41 H 1.08994 * 109.47235 * 60.00181 * 14 13 12 42 42 H 0.96998 * 119.99902 * 359.97438 * 15 14 13 43 43 H 1.09004 * 109.47303 * 299.99751 * 18 16 15 44 44 H 1.09006 * 109.47511 * 59.99630 * 18 16 15 45 45 H 0.97002 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2259 1.1098 0.0000 4 8 1.7983 2.2447 -0.0079 5 6 3.6918 0.7362 0.0089 6 6 3.7019 -0.7500 0.4356 7 6 2.2930 -1.2117 0.0005 8 1 2.3293 -1.6442 -0.9992 9 6 1.7472 -2.2160 0.9828 10 8 0.9706 -1.8613 1.8442 11 7 2.1221 -3.5081 0.9039 12 6 1.5910 -4.4844 1.8585 13 6 2.1660 -5.8675 1.5464 14 6 1.6118 -6.8870 2.5437 15 7 2.1629 -8.2112 2.2452 16 6 1.8123 -9.2724 2.9987 17 8 1.0411 -9.1309 3.9239 18 6 2.3787 -10.6346 2.6913 19 16 1.7233 -11.8407 3.8711 20 6 2.5257 -13.2997 3.2949 21 1 3.1910 -13.2505 2.4455 22 6 2.3037 -14.5121 3.9332 23 7 2.9027 -15.6021 3.5024 24 14 1.1536 -14.5971 5.4027 25 1 -0.2283 -14.8737 4.9345 26 1 1.5943 -15.6836 6.3140 27 1 1.1804 -13.3014 6.1279 28 1 -0.3634 0.0015 1.0276 29 1 -0.3633 0.8893 -0.5151 30 1 -0.3634 -0.8906 -0.5126 31 1 4.2361 1.3442 0.7316 32 1 4.1206 0.8502 -0.9867 33 1 3.8287 -0.8453 1.5140 34 1 4.4751 -1.3040 -0.0966 35 1 2.7401 -3.7925 0.2125 36 1 1.8729 -4.1935 2.8704 37 1 0.5044 -4.5162 1.7791 38 1 1.8840 -6.1583 0.5345 39 1 3.2526 -5.8356 1.6259 40 1 1.8941 -6.5960 3.5555 41 1 0.5253 -6.9189 2.4646 42 1 2.7794 -8.3244 1.5050 43 1 2.0967 -10.9256 1.6794 44 1 3.4654 -10.6028 2.7707 45 1 2.7479 -16.4493 3.9487 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001742745651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:16 Heat of formation + Delta-G solvation = -142.400860 kcal Electronic energy + Delta-G solvation = -25924.142147 eV Core-core repulsion = 21873.354217 eV Total energy + Delta-G solvation = -4050.787931 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94531 -40.65756 -40.19291 -37.56839 -37.02595 -35.57375 -34.66120 -33.79603 -32.73861 -30.78491 -29.28893 -27.85242 -27.65805 -26.14346 -23.55476 -22.80271 -21.82985 -21.68112 -20.50235 -19.86152 -18.66406 -17.97726 -17.73992 -17.43967 -17.12381 -17.08903 -17.02962 -16.64758 -16.40042 -15.92364 -15.61969 -15.46385 -14.93996 -14.85068 -14.78716 -14.62565 -14.51355 -14.15876 -13.65832 -13.53218 -13.38837 -13.34875 -13.20876 -13.13391 -13.00445 -12.82151 -12.60131 -12.58006 -12.06773 -12.03537 -11.86173 -11.20434 -11.16321 -11.01722 -10.93281 -10.51409 -10.17106 -10.11197 -9.78932 -8.98438 -8.50795 -6.21248 1.00731 1.31943 1.39324 1.46957 1.47892 1.56705 1.58723 1.81376 2.13047 2.25418 2.38137 2.74085 2.87840 3.26940 3.39702 3.68020 3.83398 3.99715 4.00846 4.01919 4.05971 4.13712 4.26756 4.27007 4.38397 4.50228 4.53513 4.59133 4.62317 4.79087 4.82019 4.83468 4.98035 5.05146 5.13203 5.13374 5.33430 5.37792 5.43447 5.71635 5.98042 6.12469 6.49132 6.52220 6.94982 7.01943 7.20159 7.23349 8.61390 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.043767 B = 0.001342 C = 0.001320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.593490 B =20857.535054 C =21211.657516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.609 5.609 3 C 0.501 3.499 4 O -0.585 6.585 5 C -0.144 4.144 6 C -0.110 4.110 7 C 0.112 3.888 8 H 0.148 0.852 9 C 0.502 3.498 10 O -0.576 6.576 11 N -0.704 5.704 12 C 0.124 3.876 13 C -0.122 4.122 14 C 0.120 3.880 15 N -0.709 5.709 16 C 0.532 3.468 17 O -0.567 6.567 18 C -0.110 4.110 19 S -0.182 6.182 20 C -0.528 4.528 21 H 0.065 0.935 22 C 0.047 3.953 23 N -0.916 5.916 24 Si 0.912 3.088 25 H -0.263 1.263 26 H -0.260 1.260 27 H -0.238 1.238 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.138 0.862 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.424 0.576 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.420 0.580 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 30.493 -14.335 34.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.342 5.342 3 C 0.291 3.709 4 O -0.466 6.466 5 C -0.183 4.183 6 C -0.148 4.148 7 C 0.005 3.995 8 H 0.165 0.835 9 C 0.288 3.712 10 O -0.455 6.455 11 N -0.358 5.358 12 C -0.001 4.001 13 C -0.160 4.160 14 C -0.005 4.005 15 N -0.363 5.363 16 C 0.318 3.682 17 O -0.445 6.445 18 C -0.261 4.261 19 S 0.044 5.956 20 C -0.675 4.675 21 H 0.083 0.917 22 C -0.158 4.158 23 N -0.554 5.554 24 Si 0.735 3.265 25 H -0.188 1.188 26 H -0.184 1.184 27 H -0.162 1.162 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.156 0.844 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.262 0.738 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.258 0.742 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.472 31.372 -12.195 33.838 hybrid contribution 0.513 -0.978 -0.783 1.354 sum 3.985 30.395 -12.978 33.289 Atomic orbital electron populations 1.21487 0.78068 1.02999 1.01555 1.48125 1.06849 1.06868 1.72362 1.21871 0.91511 0.83558 0.73935 1.90705 1.80117 1.23010 1.52725 1.22420 0.90971 0.97929 1.07006 1.22736 0.93606 0.94889 1.03524 1.22033 0.92167 0.84594 1.00657 0.83465 1.21140 0.80962 0.83786 0.85322 1.90768 1.36650 1.80006 1.38038 1.45719 1.48539 1.06761 1.34784 1.21113 0.98556 0.87469 0.92917 1.21807 1.02819 0.91214 1.00155 1.21252 0.98485 0.81185 0.99535 1.45636 1.49201 1.07004 1.34466 1.19989 0.80484 0.85975 0.81764 1.90706 1.36542 1.85766 1.31501 1.23275 1.05187 0.93753 1.03919 1.84792 1.63785 1.03040 1.43981 1.22462 1.31961 0.93904 1.19200 0.91728 1.25526 0.96573 0.94241 0.99471 1.70010 1.43357 0.99948 1.42129 0.85896 0.79739 0.80562 0.80350 1.18804 1.18429 1.16168 0.93813 0.91418 0.89577 0.87185 0.84406 0.90423 0.83274 0.73800 0.92253 0.92348 0.88092 0.87910 0.92372 0.92440 0.74191 0.86602 0.86544 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.56 9.59 127.77 1.23 2.79 16 2 N -0.61 -8.31 3.01 -822.80 -2.48 -10.79 16 3 C 0.50 8.35 8.03 87.88 0.71 9.05 16 4 O -0.59 -15.84 17.60 -3.02 -0.05 -15.89 16 5 C -0.14 -0.68 6.86 30.59 0.21 -0.47 16 6 C -0.11 -0.02 6.68 31.66 0.21 0.19 16 7 C 0.11 0.53 3.71 44.71 0.17 0.69 16 8 H 0.15 -0.46 8.14 -2.39 -0.02 -0.48 16 9 C 0.50 5.19 6.71 87.66 0.59 5.78 16 10 O -0.58 -12.53 15.01 -3.03 -0.05 -12.57 16 11 N -0.70 -2.80 5.56 -463.05 -2.57 -5.37 16 12 C 0.12 1.03 5.67 86.38 0.49 1.52 16 13 C -0.12 -0.56 5.44 30.59 0.17 -0.40 16 14 C 0.12 1.79 5.67 86.38 0.49 2.28 16 15 N -0.71 -12.88 5.56 -463.06 -2.57 -15.45 16 16 C 0.53 16.56 7.85 87.66 0.69 17.24 16 17 O -0.57 -23.14 15.86 -3.03 -0.05 -23.19 16 18 C -0.11 -3.82 6.16 71.23 0.44 -3.38 16 19 S -0.18 -8.95 18.55 -56.49 -1.05 -9.99 16 20 C -0.53 -29.91 10.04 67.96 0.68 -29.23 16 21 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 22 C 0.05 2.73 5.50 84.86 0.47 3.19 16 23 N -0.92 -54.80 13.97 21.65 0.30 -54.50 16 24 Si 0.91 44.33 27.74 68.60 1.90 46.23 16 25 H -0.26 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 27 H -0.24 -11.56 6.74 99.48 0.67 -10.89 16 28 H 0.04 0.89 7.49 -2.39 -0.02 0.87 16 29 H 0.07 1.10 7.93 -2.38 -0.02 1.08 16 30 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.14 -0.08 8.14 -2.39 -0.02 -0.10 16 33 H 0.08 0.26 7.91 -2.39 -0.02 0.24 16 34 H 0.15 -1.27 8.14 -2.39 -0.02 -1.29 16 35 H 0.42 -1.81 8.47 -92.70 -0.79 -2.60 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.42 4.32 8.47 -92.71 -0.79 3.53 16 43 H 0.12 3.60 8.14 -2.39 -0.02 3.58 16 44 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 45 H 0.28 15.32 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -93.60 394.16 -0.67 -94.27 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -0.59 Total: -2.03 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: 6.53 Total: 9.28 kcal Atomic # 7 Polarization: -78.79 SS G_CDS: -7.32 Total: -86.11 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -0.15 Total: -51.65 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.90 Total: 46.23 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.05 Total: -9.99 kcal Total: -93.60 -0.67 -94.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001742745651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.127 kcal (2) G-P(sol) polarization free energy of solvation -93.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds