Wall clock time and date at job start Wed Apr 1 2020 01:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99658 * 2 1 4 4 C 1.52992 * 109.47485 * 90.00211 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.21923 * 41.93553 * 9 7 6 11 11 C 1.54478 * 110.24988 * 280.00382 * 9 7 6 12 12 C 1.54625 * 101.76859 * 215.58707 * 11 9 7 13 13 C 1.51285 * 104.19432 * 24.79225 * 12 11 9 14 14 O 1.21281 * 124.93856 * 163.78312 * 13 12 11 15 15 N 1.34414 * 110.11577 * 343.75159 * 13 12 11 16 16 C 1.34777 * 120.00297 * 180.02562 * 2 1 3 17 17 O 1.21276 * 119.99683 * 179.97438 * 16 2 1 18 18 C 1.50695 * 119.99811 * 359.97438 * 16 2 1 19 19 S 1.80995 * 109.47272 * 180.02562 * 18 16 2 20 20 C 1.76197 * 100.00284 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99762 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99939 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99871 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47498 * 59.98858 * 24 22 20 26 26 H 1.48498 * 109.47248 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46926 * 299.99113 * 24 22 20 28 28 H 1.09000 * 109.46983 * 90.00199 * 1 2 3 29 29 H 1.08998 * 109.46888 * 210.00036 * 1 2 3 30 30 H 1.09001 * 109.47128 * 330.00022 * 1 2 3 31 31 H 1.09002 * 109.47280 * 329.99916 * 3 2 1 32 32 H 1.09001 * 109.46702 * 210.00108 * 3 2 1 33 33 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 34 34 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 37 37 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 38 38 H 1.09003 * 110.96667 * 333.70130 * 11 9 7 39 39 H 1.09003 * 110.96944 * 97.42481 * 11 9 7 40 40 H 1.08995 * 110.49088 * 143.47253 * 12 11 9 41 41 H 1.09001 * 110.48449 * 266.11807 * 12 11 9 42 42 H 0.97003 * 124.34542 * 179.58715 * 15 13 12 43 43 H 1.08996 * 109.47493 * 300.00517 * 18 16 2 44 44 H 1.09003 * 109.46861 * 60.00065 * 18 16 2 45 45 H 0.96991 * 120.00728 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4617 3.4585 2.8236 7 6 4.1249 4.6056 3.0698 8 8 4.5197 5.2877 2.1480 9 6 4.3751 5.0412 4.4906 10 1 4.6698 4.1871 5.1002 11 6 3.1095 5.7051 5.0770 12 6 3.7183 6.8092 5.9720 13 6 5.0739 7.0795 5.3572 14 8 5.7550 8.0580 5.5800 15 7 5.4140 6.0772 4.5288 16 6 2.1390 -1.1672 -0.0005 17 8 3.3517 -1.1670 -0.0010 18 6 1.3855 -2.4722 -0.0005 19 16 2.5617 -3.8480 -0.0005 20 6 1.4417 -5.2081 -0.0013 21 1 0.3764 -5.0304 -0.0012 22 6 1.9285 -6.5080 -0.0010 23 7 3.2268 -6.7246 -0.0006 24 14 0.7410 -7.9500 -0.0025 25 1 -0.1129 -7.8869 -1.2158 26 1 1.5072 -9.2221 -0.0025 27 1 -0.1152 -7.8874 1.2092 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5139 33 1 3.0416 0.9509 1.9562 34 1 1.5001 1.8408 1.9562 35 1 2.6293 3.7951 0.9284 36 1 4.1704 2.9045 0.9286 37 1 3.1463 2.9127 3.5609 38 1 2.4947 6.1378 4.2877 39 1 2.5351 4.9937 5.6704 40 1 3.1008 7.7069 5.9439 41 1 3.8282 6.4526 6.9962 42 1 6.2400 6.0430 4.0213 43 1 0.7591 -2.5302 0.8896 44 1 0.7585 -2.5298 -0.8903 45 1 3.5670 -7.6329 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743611781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:35 Heat of formation + Delta-G solvation = -109.679176 kcal Electronic energy + Delta-G solvation = -26248.144329 eV Core-core repulsion = 22198.775317 eV Total energy + Delta-G solvation = -4049.369012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27220 -39.71829 -39.41196 -36.78997 -36.23542 -35.15353 -32.47478 -32.45605 -31.81781 -29.65198 -28.63146 -27.00650 -25.62714 -25.06612 -23.21108 -22.14828 -21.15284 -20.89820 -19.26433 -18.31040 -17.79800 -17.72293 -16.81863 -16.55857 -16.30008 -15.92391 -15.75378 -15.44410 -15.06147 -14.84605 -14.66269 -14.20135 -14.13215 -13.90974 -13.74410 -13.40974 -13.30919 -13.12007 -12.78650 -12.70342 -12.58848 -12.46292 -12.27025 -11.93725 -11.87496 -11.77371 -11.10555 -11.08757 -11.07626 -10.80383 -10.59153 -10.35584 -9.86409 -9.63101 -9.54866 -9.45451 -9.10353 -8.66350 -8.28751 -6.55634 -6.25932 -3.97229 2.00969 2.07466 2.44290 2.85000 2.94489 3.01391 3.19693 3.22196 3.25659 3.54046 3.71326 3.75913 4.05187 4.15991 4.30044 4.40785 4.56425 4.62296 4.75992 4.86957 4.88806 5.02723 5.03975 5.09184 5.14292 5.18750 5.25934 5.27122 5.35021 5.49600 5.53413 5.62357 5.79709 5.82486 5.87489 5.95733 6.06655 6.20745 6.51036 6.53684 6.94618 7.42100 7.54691 7.64113 7.76802 8.30299 8.46362 9.19189 10.81396 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.001567 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.839139 B =17869.056598 C =18244.481684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.626 5.626 3 C 0.122 3.878 4 C -0.148 4.148 5 C 0.122 3.878 6 N -0.722 5.722 7 C 0.504 3.496 8 O -0.527 6.527 9 C 0.113 3.887 10 H 0.109 0.891 11 C -0.122 4.122 12 C -0.155 4.155 13 C 0.522 3.478 14 O -0.530 6.530 15 N -0.710 5.710 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.404 0.596 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.417 0.583 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.852 23.077 9.835 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.362 5.362 3 C -0.002 4.002 4 C -0.187 4.187 5 C -0.002 4.002 6 N -0.374 5.374 7 C 0.288 3.712 8 O -0.403 6.403 9 C 0.003 3.997 10 H 0.127 0.873 11 C -0.160 4.160 12 C -0.195 4.195 13 C 0.309 3.691 14 O -0.406 6.406 15 N -0.366 5.366 16 C 0.320 3.680 17 O -0.388 6.388 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.238 0.762 38 H 0.107 0.893 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.257 0.743 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.358 23.960 9.323 26.076 hybrid contribution -2.133 -1.409 0.039 2.557 sum -6.491 22.551 9.361 25.265 Atomic orbital electron populations 1.21774 0.79575 1.03083 1.01886 1.47865 1.06860 1.05567 1.75895 1.21212 0.98521 0.85103 0.95399 1.22184 1.00841 0.96394 0.99320 1.21328 1.00879 0.95759 0.82233 1.45956 1.58134 1.23701 1.09645 1.20668 0.78331 0.81098 0.91102 1.90771 1.50169 1.53548 1.45771 1.21610 0.90501 0.93139 0.94464 0.87345 1.22625 0.95274 0.98244 0.99833 1.22378 0.94964 1.01189 1.00974 1.20836 0.88190 0.81518 0.78598 1.90786 1.57908 1.28842 1.63046 1.45955 1.21899 1.21741 1.47006 1.20381 0.87958 0.84610 0.75023 1.90699 1.13720 1.86789 1.47557 1.23561 1.04591 0.97258 1.04727 1.85399 1.08023 0.93350 1.96722 1.22813 0.94257 0.92211 1.59227 0.90986 1.24987 0.95671 0.98370 0.94479 1.69997 1.11759 1.21823 1.46651 0.86229 0.80186 0.80309 0.78802 1.19922 1.20789 1.19940 0.92639 0.90606 0.91430 0.90532 0.89433 0.90270 0.91112 0.91148 0.90802 0.76158 0.89285 0.87876 0.87446 0.87141 0.74315 0.89262 0.89246 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.69 10.24 59.85 0.61 1.31 16 2 N -0.63 -7.65 2.87 -181.57 -0.52 -8.17 16 3 C 0.12 1.19 5.41 -4.04 -0.02 1.16 16 4 C -0.15 -1.15 5.65 -26.74 -0.15 -1.30 16 5 C 0.12 0.90 5.67 -4.04 -0.02 0.88 16 6 N -0.72 -4.23 5.56 -60.29 -0.33 -4.57 16 7 C 0.50 3.83 7.03 -10.99 -0.08 3.75 16 8 O -0.53 -6.40 16.54 5.56 0.09 -6.31 16 9 C 0.11 0.54 3.93 -68.16 -0.27 0.27 16 10 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 11 C -0.12 -0.33 6.67 -25.10 -0.17 -0.50 16 12 C -0.15 -0.65 6.86 -26.74 -0.18 -0.83 16 13 C 0.52 4.59 8.43 -10.86 -0.09 4.49 16 14 O -0.53 -7.08 18.03 5.56 0.10 -6.98 16 15 N -0.71 -5.30 5.46 -53.88 -0.29 -5.59 16 16 C 0.53 9.35 7.69 -10.99 -0.08 9.26 16 17 O -0.51 -10.99 15.44 5.56 0.09 -10.90 16 18 C -0.15 -2.89 4.71 36.00 0.17 -2.73 16 19 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 20 C -0.54 -14.88 9.50 30.94 0.29 -14.59 16 21 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.64 13.22 55.49 0.73 -24.91 16 24 Si 0.92 20.86 29.55 -169.99 -5.02 15.84 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.68 6.44 -51.93 -0.33 0.35 16 30 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 31 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.09 1.04 7.42 -51.93 -0.39 0.65 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.40 1.28 8.47 -40.82 -0.35 0.94 16 38 H 0.09 0.31 7.91 -51.93 -0.41 -0.10 16 39 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 40 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.11 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.42 3.32 8.94 -40.82 -0.36 2.95 16 43 H 0.09 1.56 7.40 -51.92 -0.38 1.18 16 44 H 0.09 1.60 8.11 -51.92 -0.42 1.18 16 45 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 396.08 15.07 5.97 5.97 Total: -1.00 -39.45 396.08 -8.33 -47.78 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -6.83 Total: -1.48 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.09 Total: 3.15 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: -0.42 Total: -43.24 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: 0.28 Total: -24.19 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.45 -8.33 -47.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743611781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.901 kcal (2) G-P(sol) polarization free energy of solvation -39.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds