Wall clock time and date at job start Wed Apr 1 2020 01:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46507 * 119.99658 * 2 1 4 4 C 1.52992 * 109.47485 * 90.00211 * 3 2 1 5 5 C 1.52997 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 3 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 H 1.09002 * 110.21923 * 41.93553 * 9 7 6 11 11 C 1.54478 * 110.24988 * 280.00382 * 9 7 6 12 12 C 1.54625 * 101.76859 * 215.58707 * 11 9 7 13 13 C 1.51285 * 104.19432 * 24.79225 * 12 11 9 14 14 O 1.21281 * 124.93856 * 163.78312 * 13 12 11 15 15 N 1.34414 * 110.11577 * 343.75159 * 13 12 11 16 16 C 1.34777 * 120.00297 * 180.02562 * 2 1 3 17 17 O 1.21276 * 119.99683 * 179.97438 * 16 2 1 18 18 C 1.50695 * 119.99811 * 359.97438 * 16 2 1 19 19 S 1.80995 * 109.47272 * 180.02562 * 18 16 2 20 20 C 1.76197 * 100.00284 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99762 * 359.97438 * 20 19 18 22 22 C 1.38801 * 119.99939 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00381 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99871 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47498 * 59.98858 * 24 22 20 26 26 H 1.48498 * 109.47248 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.46926 * 299.99113 * 24 22 20 28 28 H 1.09000 * 109.46983 * 90.00199 * 1 2 3 29 29 H 1.08998 * 109.46888 * 210.00036 * 1 2 3 30 30 H 1.09001 * 109.47128 * 330.00022 * 1 2 3 31 31 H 1.09002 * 109.47280 * 329.99916 * 3 2 1 32 32 H 1.09001 * 109.46702 * 210.00108 * 3 2 1 33 33 H 1.09002 * 109.47103 * 59.99596 * 4 3 2 34 34 H 1.08998 * 109.46862 * 300.00408 * 4 3 2 35 35 H 1.09002 * 109.47153 * 59.99783 * 5 4 3 36 36 H 1.09001 * 109.46832 * 299.99974 * 5 4 3 37 37 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 38 38 H 1.09003 * 110.96667 * 333.70130 * 11 9 7 39 39 H 1.09003 * 110.96944 * 97.42481 * 11 9 7 40 40 H 1.08995 * 110.49088 * 143.47253 * 12 11 9 41 41 H 1.09001 * 110.48449 * 266.11807 * 12 11 9 42 42 H 0.97003 * 124.34542 * 179.58715 * 15 13 12 43 43 H 1.08996 * 109.47493 * 300.00517 * 18 16 2 44 44 H 1.09003 * 109.46861 * 60.00065 * 18 16 2 45 45 H 0.96991 * 120.00728 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4424 5 6 3.2180 3.0353 1.4424 6 7 3.4617 3.4585 2.8236 7 6 4.1249 4.6056 3.0698 8 8 4.5197 5.2877 2.1480 9 6 4.3751 5.0412 4.4906 10 1 4.6698 4.1871 5.1002 11 6 3.1095 5.7051 5.0770 12 6 3.7183 6.8092 5.9720 13 6 5.0739 7.0795 5.3572 14 8 5.7550 8.0580 5.5800 15 7 5.4140 6.0772 4.5288 16 6 2.1390 -1.1672 -0.0005 17 8 3.3517 -1.1670 -0.0010 18 6 1.3855 -2.4722 -0.0005 19 16 2.5617 -3.8480 -0.0005 20 6 1.4417 -5.2081 -0.0013 21 1 0.3764 -5.0304 -0.0012 22 6 1.9285 -6.5080 -0.0010 23 7 3.2268 -6.7246 -0.0006 24 14 0.7410 -7.9500 -0.0025 25 1 -0.1129 -7.8869 -1.2158 26 1 1.5072 -9.2221 -0.0025 27 1 -0.1152 -7.8874 1.2092 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6084 2.0285 -0.5138 32 1 3.1499 1.1385 -0.5139 33 1 3.0416 0.9509 1.9562 34 1 1.5001 1.8408 1.9562 35 1 2.6293 3.7951 0.9284 36 1 4.1704 2.9045 0.9286 37 1 3.1463 2.9127 3.5609 38 1 2.4947 6.1378 4.2877 39 1 2.5351 4.9937 5.6704 40 1 3.1008 7.7069 5.9439 41 1 3.8282 6.4526 6.9962 42 1 6.2400 6.0430 4.0213 43 1 0.7591 -2.5302 0.8896 44 1 0.7585 -2.5298 -0.8903 45 1 3.5670 -7.6329 -0.0007 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743611781.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:34 Heat of formation + Delta-G solvation = -141.880292 kcal Electronic energy + Delta-G solvation = -26249.540674 eV Core-core repulsion = 22198.775317 eV Total energy + Delta-G solvation = -4050.765357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82950 -40.85154 -40.18273 -37.51979 -37.10289 -36.05839 -34.57343 -33.25988 -32.24308 -30.80233 -29.38385 -27.77139 -27.67366 -25.98233 -23.67374 -22.83803 -21.73358 -21.44483 -20.55545 -19.50823 -18.90951 -18.29045 -18.03774 -17.40676 -16.96180 -16.86741 -16.76873 -16.58426 -16.56241 -15.88994 -15.58891 -15.37320 -14.76089 -14.73112 -14.54415 -14.50759 -14.24960 -14.12130 -13.61638 -13.53808 -13.43112 -13.24481 -13.15965 -12.98795 -12.88297 -12.83940 -12.66659 -12.57517 -12.08165 -11.84286 -11.69289 -11.25361 -11.11629 -11.03498 -10.86318 -10.25047 -10.24169 -10.15177 -9.67959 -8.66000 -8.33316 -6.11651 1.27591 1.42151 1.44893 1.45422 1.48143 1.56902 1.59847 1.91574 2.18726 2.29351 2.45926 3.00866 3.28545 3.29930 3.40133 3.70508 3.73026 3.95884 4.01955 4.02817 4.09861 4.18249 4.25766 4.40097 4.45587 4.49955 4.51859 4.61451 4.70012 4.82365 4.83374 4.97677 4.99702 5.05406 5.09679 5.16655 5.35911 5.42596 5.61831 5.65215 5.90661 6.20493 6.29851 6.45903 7.07926 7.08210 7.16111 7.18108 8.75500 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022633 B = 0.001567 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.839139 B =17869.056598 C =18244.481684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.115 3.885 4 C -0.132 4.132 5 C 0.127 3.873 6 N -0.708 5.708 7 C 0.503 3.497 8 O -0.580 6.580 9 C 0.113 3.887 10 H 0.144 0.856 11 C -0.110 4.110 12 C -0.145 4.145 13 C 0.508 3.492 14 O -0.589 6.589 15 N -0.715 5.715 16 C 0.529 3.471 17 O -0.565 6.565 18 C -0.124 4.124 19 S -0.155 6.155 20 C -0.546 4.546 21 H 0.084 0.916 22 C 0.014 3.986 23 N -0.912 5.912 24 Si 0.997 3.003 25 H -0.263 1.263 26 H -0.281 1.281 27 H -0.260 1.260 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.048 0.952 37 H 0.420 0.580 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.113 0.887 41 H 0.136 0.864 42 H 0.409 0.591 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.946 23.142 11.171 27.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C -0.008 4.008 4 C -0.171 4.171 5 C 0.003 3.997 6 N -0.360 5.360 7 C 0.289 3.711 8 O -0.459 6.459 9 C 0.004 3.996 10 H 0.161 0.839 11 C -0.148 4.148 12 C -0.185 4.185 13 C 0.297 3.703 14 O -0.470 6.470 15 N -0.368 5.368 16 C 0.317 3.683 17 O -0.444 6.444 18 C -0.275 4.275 19 S 0.072 5.928 20 C -0.694 4.694 21 H 0.102 0.898 22 C -0.191 4.191 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.206 1.206 27 H -0.185 1.185 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.258 0.742 38 H 0.101 0.899 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.154 0.846 42 H 0.247 0.753 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.542 24.013 10.677 27.633 hybrid contribution -0.898 -1.313 -0.432 1.648 sum -9.439 22.700 10.245 26.634 Atomic orbital electron populations 1.22122 0.76704 1.05017 1.03325 1.47845 1.08562 1.04558 1.73390 1.21447 0.97791 0.84572 0.96982 1.21995 1.01810 0.95442 0.97809 1.21162 0.99717 0.95815 0.83018 1.45817 1.57316 1.23282 1.09634 1.21182 0.77390 0.80751 0.91794 1.90756 1.52363 1.55247 1.47577 1.21926 0.90992 0.93665 0.92977 0.83910 1.22739 0.94173 0.98266 0.99621 1.22432 0.91800 1.02146 1.02122 1.21745 0.89536 0.80637 0.78402 1.90741 1.59971 1.31135 1.65160 1.46186 1.22173 1.22268 1.46199 1.20148 0.87262 0.85609 0.75322 1.90686 1.15735 1.87512 1.50430 1.23384 1.02688 0.95072 1.06382 1.85594 1.12764 0.97423 1.97038 1.23168 0.94659 0.92646 1.58921 0.89827 1.26117 0.97539 1.01692 0.93740 1.70172 1.14148 1.22498 1.47974 0.85020 0.77637 0.75897 0.79545 1.18714 1.20585 1.18472 0.91429 0.90753 0.87516 0.86808 0.92337 0.92770 0.88090 0.90371 0.93364 0.74186 0.89929 0.83642 0.86861 0.84585 0.75304 0.87157 0.87719 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 10.24 127.77 1.31 2.22 16 2 N -0.61 -13.47 2.87 -846.76 -2.43 -15.90 16 3 C 0.12 2.01 5.41 86.38 0.47 2.48 16 4 C -0.13 -1.74 5.65 30.59 0.17 -1.56 16 5 C 0.13 1.70 5.67 86.38 0.49 2.19 16 6 N -0.71 -6.74 5.56 -463.06 -2.57 -9.32 16 7 C 0.50 6.97 7.03 87.66 0.62 7.59 16 8 O -0.58 -14.25 16.54 -3.03 -0.05 -14.30 16 9 C 0.11 0.82 3.93 44.70 0.18 0.99 16 10 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 11 C -0.11 -0.20 6.67 31.65 0.21 0.01 16 12 C -0.15 -0.85 6.86 30.59 0.21 -0.64 16 13 C 0.51 8.89 8.43 87.90 0.74 9.63 16 14 O -0.59 -16.61 18.03 -3.03 -0.05 -16.67 16 15 N -0.71 -10.53 5.46 -442.97 -2.42 -12.95 16 16 C 0.53 18.33 7.69 87.66 0.67 19.01 16 17 O -0.57 -25.02 15.44 -3.02 -0.05 -25.06 16 18 C -0.12 -4.67 4.71 71.23 0.34 -4.33 16 19 S -0.16 -8.41 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -30.35 9.50 67.95 0.65 -29.71 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 22 C 0.01 0.77 5.49 84.86 0.47 1.24 16 23 N -0.91 -55.13 13.22 21.65 0.29 -54.84 16 24 Si 1.00 42.36 29.55 68.60 2.03 44.38 16 25 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 26 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 28 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.07 1.04 6.44 -2.39 -0.02 1.02 16 30 H 0.11 0.63 8.07 -2.39 -0.02 0.61 16 31 H 0.11 1.19 8.07 -2.39 -0.02 1.17 16 32 H 0.06 1.40 7.42 -2.39 -0.02 1.39 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.42 1.23 8.47 -92.71 -0.79 0.45 16 38 H 0.08 0.32 7.91 -2.39 -0.02 0.30 16 39 H 0.15 -0.88 8.14 -2.39 -0.02 -0.90 16 40 H 0.11 0.58 8.14 -2.39 -0.02 0.57 16 41 H 0.14 0.14 8.14 -2.39 -0.02 0.12 16 42 H 0.41 6.97 8.94 -92.71 -0.83 6.14 16 43 H 0.11 3.66 7.40 -2.40 -0.02 3.64 16 44 H 0.10 3.59 8.11 -2.39 -0.02 3.57 16 45 H 0.27 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -93.89 396.08 -0.50 -94.39 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -0.59 Total: 10.72 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 6.51 Total: 9.11 kcal Atomic # 7 Polarization: -85.87 SS G_CDS: -7.14 Total: -93.01 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -0.15 Total: -56.03 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.57 kcal Total: -93.89 -0.50 -94.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743611781.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.493 kcal (2) G-P(sol) polarization free energy of solvation -93.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds