Wall clock time and date at job start Wed Apr 1 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99872 * 2 1 4 4 C 1.52999 * 109.47107 * 90.00685 * 3 2 1 5 5 H 1.09002 * 109.52038 * 304.91393 * 4 3 2 6 6 C 1.53047 * 109.49856 * 184.83574 * 4 3 2 7 7 C 1.53046 * 109.53572 * 178.67934 * 6 4 3 8 8 C 1.52758 * 109.38079 * 61.24304 * 7 6 4 9 9 N 1.46934 * 109.00967 * 305.58337 * 8 7 6 10 10 C 1.34774 * 120.62867 * 233.58850 * 9 8 7 11 11 O 1.21281 * 119.99371 * 179.44281 * 10 9 8 12 12 C 1.50703 * 120.00369 * 359.71858 * 10 9 8 13 13 S 1.81000 * 109.47009 * 179.97438 * 12 10 9 14 14 C 1.76198 * 99.99670 * 179.97438 * 13 12 10 15 15 H 1.08004 * 120.00378 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99924 * 179.97438 * 14 13 12 17 17 N 1.31624 * 119.99996 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99987 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.46788 * 59.99936 * 18 16 14 20 20 H 1.48498 * 109.46806 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46850 * 300.00081 * 18 16 14 22 22 C 1.46920 * 118.73503 * 53.31329 * 9 8 7 23 23 C 1.34772 * 119.99895 * 180.02562 * 2 1 3 24 24 O 1.21345 * 120.00241 * 185.16512 * 23 2 1 25 25 C 1.49461 * 120.00291 * 5.16691 * 23 2 1 26 26 N 1.34774 * 120.00191 * 186.02862 * 25 23 2 27 27 O 1.21349 * 119.99328 * 6.03107 * 25 23 2 28 28 H 1.08997 * 109.47665 * 95.22629 * 1 2 3 29 29 H 1.09000 * 109.47309 * 215.22874 * 1 2 3 30 30 H 1.09005 * 109.47086 * 335.22454 * 1 2 3 31 31 H 1.08994 * 109.47361 * 330.00181 * 3 2 1 32 32 H 1.09003 * 109.46973 * 209.99974 * 3 2 1 33 33 H 1.08999 * 109.45932 * 298.70127 * 6 4 3 34 34 H 1.08994 * 109.45476 * 58.67467 * 6 4 3 35 35 H 1.08999 * 109.49448 * 181.31528 * 7 6 4 36 36 H 1.08992 * 109.49841 * 301.38187 * 7 6 4 37 37 H 1.09004 * 109.50972 * 185.70612 * 8 7 6 38 38 H 1.08994 * 109.43377 * 65.41942 * 8 7 6 39 39 H 1.09000 * 109.46524 * 300.00254 * 12 10 9 40 40 H 1.08999 * 109.47000 * 60.00082 * 12 10 9 41 41 H 0.96998 * 120.00527 * 180.02562 * 17 16 14 42 42 H 1.08998 * 109.59002 * 66.42844 * 22 9 8 43 43 H 1.09007 * 109.58602 * 186.71334 * 22 9 8 44 44 H 0.96997 * 119.99791 * 0.02562 * 26 25 23 45 45 H 0.96998 * 119.99778 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5066 1.7565 1.9820 6 6 3.1101 3.0923 1.4449 7 6 3.3356 3.5492 2.8881 8 6 4.2714 2.5670 3.5903 9 7 3.7220 1.2100 3.4656 10 6 3.5269 0.4450 4.5579 11 8 3.0633 -0.6697 4.4425 12 6 3.8790 0.9771 5.9232 13 16 3.5038 -0.2759 7.1743 14 6 3.9984 0.5866 8.6290 15 1 4.3927 1.5893 8.5545 16 6 3.8801 -0.0223 9.8707 17 7 3.3991 -1.2441 9.9615 18 14 4.4038 0.8924 11.4131 19 1 3.6043 2.1367 11.5460 20 1 4.1776 0.0300 12.6007 21 1 5.8450 1.2376 11.3185 22 6 3.3836 0.7052 2.1279 23 6 2.1389 -1.1672 -0.0005 24 8 3.3486 -1.1694 0.0941 25 6 1.3962 -2.4589 -0.1177 26 7 2.0549 -3.6284 0.0036 27 8 0.2000 -2.4545 -0.3220 28 1 -0.3634 -0.0936 -1.0233 29 1 -0.3634 -0.8394 0.5928 30 1 -0.3633 0.9331 0.4307 31 1 1.6084 2.0283 -0.5138 32 1 3.1499 1.1384 -0.5138 33 1 4.0675 3.0399 0.9267 34 1 2.4603 3.8044 0.9362 35 1 3.7825 4.5434 2.8893 36 1 2.3813 3.5786 3.4138 37 1 4.3533 2.8325 4.6444 38 1 5.2556 2.6070 3.1237 39 1 4.9417 1.2176 5.9564 40 1 3.2966 1.8763 6.1240 41 1 3.3161 -1.6695 10.8293 42 1 4.2939 0.5903 1.5396 43 1 2.8821 -0.2586 2.2171 44 1 3.0109 -3.6318 0.1673 45 1 1.5727 -4.4667 -0.0721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744281829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:10 Heat of formation + Delta-G solvation = -129.310469 kcal Electronic energy + Delta-G solvation = -28424.628570 eV Core-core repulsion = 24374.408281 eV Total energy + Delta-G solvation = -4050.220289 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.99545 -41.11027 -39.62485 -38.54365 -37.03622 -34.74864 -34.59879 -34.21270 -32.58580 -30.97744 -28.20961 -27.87382 -27.65784 -26.14583 -25.08538 -23.03796 -21.77291 -20.83287 -20.38095 -19.52649 -18.96353 -18.34002 -18.23930 -17.38777 -17.14694 -16.92891 -16.87379 -16.61509 -16.27612 -15.85252 -15.61343 -15.32383 -15.15005 -14.91949 -14.56813 -14.48310 -14.27614 -14.03286 -13.88571 -13.57207 -13.46213 -13.35930 -13.18168 -12.87214 -12.85486 -12.60812 -12.41399 -12.05514 -11.87082 -11.82166 -11.72167 -11.51964 -11.13874 -10.93403 -10.87658 -10.58188 -10.28732 -9.83692 -9.65695 -8.69805 -8.35360 -6.14701 0.31201 1.23833 1.40832 1.43564 1.44764 1.54322 1.55032 2.08047 2.11191 2.26519 2.64194 2.98558 3.23640 3.48596 3.60916 3.73423 3.78381 3.94386 4.08552 4.21010 4.24120 4.26004 4.38203 4.41228 4.46616 4.57513 4.62522 4.67218 4.77510 4.86417 4.95231 4.97639 5.05620 5.14882 5.20369 5.30731 5.39909 5.46030 5.56318 5.57461 5.87435 6.08732 6.18309 6.29629 6.66881 6.97451 7.05212 7.12456 8.73779 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014004 B = 0.002806 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.978051 B = 9977.953400 C =11369.463973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.584 5.584 3 C 0.121 3.879 4 C -0.113 4.113 5 H 0.066 0.934 6 C -0.104 4.104 7 C -0.129 4.129 8 C 0.094 3.906 9 N -0.608 5.608 10 C 0.528 3.472 11 O -0.570 6.570 12 C -0.121 4.121 13 S -0.153 6.153 14 C -0.547 4.547 15 H 0.083 0.917 16 C 0.014 3.986 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.261 1.261 22 C 0.128 3.872 23 C 0.495 3.505 24 O -0.535 6.535 25 C 0.507 3.493 26 N -0.806 5.806 27 O -0.540 6.540 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.127 0.873 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.071 0.929 43 H 0.050 0.950 44 H 0.420 0.580 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.415 10.805 -25.117 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.317 5.317 3 C -0.001 4.001 4 C -0.133 4.133 5 H 0.085 0.915 6 C -0.142 4.142 7 C -0.167 4.167 8 C -0.028 4.028 9 N -0.342 5.342 10 C 0.316 3.684 11 O -0.449 6.449 12 C -0.272 4.272 13 S 0.074 5.926 14 C -0.695 4.695 15 H 0.101 0.899 16 C -0.191 4.191 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.185 1.185 20 H -0.204 1.204 21 H -0.186 1.186 22 C 0.005 3.995 23 C 0.277 3.723 24 O -0.412 6.412 25 C 0.286 3.714 26 N -0.373 5.373 27 O -0.418 6.418 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.110 0.890 31 H 0.145 0.855 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.116 0.884 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.251 0.749 45 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -2.253 9.219 -25.289 27.011 hybrid contribution 0.864 0.495 1.421 1.735 sum -1.389 9.714 -23.867 25.806 Atomic orbital electron populations 1.22205 0.76674 1.03976 1.03534 1.47845 1.08948 1.05386 1.69495 1.21876 0.98688 0.83816 0.95736 1.21963 0.98741 0.96456 0.96158 0.91545 1.21511 1.02048 0.93870 0.96757 1.21837 0.99647 0.99258 0.95999 1.22034 0.98140 0.79750 1.02888 1.48198 1.63716 1.16536 1.05708 1.20217 0.77182 0.84821 0.86200 1.90658 1.45951 1.21652 1.86685 1.23348 1.05558 1.03645 0.94607 1.85608 1.84796 1.22977 0.99243 1.23163 1.49613 1.03985 0.92722 0.89859 1.26155 0.94432 0.95902 1.02622 1.70180 1.43725 1.14482 1.26418 0.84986 0.79235 0.78024 0.75638 1.18518 1.20379 1.18574 1.21640 0.99157 0.97200 0.81458 1.20246 0.87475 0.85998 0.78552 1.90760 1.14170 1.87375 1.48918 1.20184 0.87089 0.86572 0.77569 1.43482 1.14654 1.07386 1.71732 1.90765 1.14848 1.87721 1.48468 0.90709 0.91303 0.89018 0.85548 0.89185 0.90137 0.88429 0.87435 0.92421 0.89598 0.89465 0.87622 0.87482 0.91968 0.91034 0.93151 0.74904 0.74471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.28 9.24 127.77 1.18 2.46 16 2 N -0.58 -11.18 2.77 -848.36 -2.35 -13.53 16 3 C 0.12 1.66 4.97 86.38 0.43 2.09 16 4 C -0.11 -1.98 2.55 -10.71 -0.03 -2.00 16 5 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 6 C -0.10 -1.14 5.17 30.63 0.16 -0.98 16 7 C -0.13 -1.75 6.07 30.53 0.19 -1.57 16 8 C 0.09 1.87 6.31 86.22 0.54 2.42 16 9 N -0.61 -18.12 2.98 -819.73 -2.44 -20.56 16 10 C 0.53 21.66 7.72 87.66 0.68 22.34 16 11 O -0.57 -28.85 15.27 -3.03 -0.05 -28.90 16 12 C -0.12 -5.08 4.50 71.24 0.32 -4.76 16 13 S -0.15 -8.81 20.57 -56.49 -1.16 -9.97 16 14 C -0.55 -31.73 9.50 67.96 0.65 -31.08 16 15 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 16 C 0.01 0.78 5.49 84.86 0.47 1.25 16 17 N -0.91 -56.72 13.22 21.65 0.29 -56.44 16 18 Si 1.00 43.80 29.55 68.60 2.03 45.82 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 C 0.13 3.48 4.26 86.36 0.37 3.85 16 23 C 0.50 11.93 6.55 87.27 0.57 12.50 16 24 O -0.53 -14.59 13.82 -3.23 -0.04 -14.64 16 25 C 0.51 11.89 7.97 87.27 0.70 12.58 16 26 N -0.81 -14.16 8.87 -174.49 -1.55 -15.71 16 27 O -0.54 -14.21 14.22 -3.24 -0.05 -14.26 16 28 H 0.07 1.07 8.11 -2.39 -0.02 1.05 16 29 H 0.07 1.51 5.94 -2.39 -0.01 1.50 16 30 H 0.09 1.07 8.03 -2.38 -0.02 1.05 16 31 H 0.13 0.83 8.07 -2.39 -0.02 0.81 16 32 H 0.09 1.29 7.50 -2.39 -0.02 1.28 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.78 5.93 -2.39 -0.01 1.77 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 4.05 7.95 -2.39 -0.02 4.04 16 40 H 0.11 4.07 7.68 -2.40 -0.02 4.05 16 41 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.07 1.93 7.65 -2.39 -0.02 1.91 16 43 H 0.05 1.78 5.33 -2.38 -0.01 1.77 16 44 H 0.42 6.74 8.32 -92.71 -0.77 5.97 16 45 H 0.42 5.52 8.93 -92.71 -0.83 4.69 16 Total: -1.00 -85.70 377.29 0.33 -85.38 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: -0.56 Total: 23.70 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 6.21 Total: 19.11 kcal Atomic # 7 Polarization: -100.19 SS G_CDS: -6.06 Total: -106.24 kcal Atomic # 8 Polarization: -57.66 SS G_CDS: -0.14 Total: -57.80 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.81 SS G_CDS: -1.16 Total: -9.97 kcal Total: -85.70 0.33 -85.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744281829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.935 kcal (2) G-P(sol) polarization free energy of solvation -85.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds