Wall clock time and date at job start Wed Apr 1 2020 01:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 120.00012 * 2 1 4 4 C 1.53004 * 109.47198 * 270.00064 * 3 2 1 5 5 N 1.46499 * 109.47198 * 179.97438 * 4 3 2 6 6 C 1.34777 * 119.99665 * 180.27868 * 5 4 3 7 7 O 1.21283 * 119.99990 * 359.71991 * 6 5 4 8 8 C 1.50698 * 119.99538 * 179.72653 * 6 5 4 9 9 S 1.81005 * 109.46906 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99828 * 179.97438 * 9 8 6 11 11 H 1.07994 * 120.00390 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99869 * 179.97438 * 10 9 8 13 13 N 1.31633 * 119.99970 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 120.00277 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46837 * 90.00131 * 14 12 10 16 16 H 1.48499 * 109.47248 * 210.00232 * 14 12 10 17 17 H 1.48498 * 109.46779 * 330.00348 * 14 12 10 18 18 C 1.34773 * 119.99855 * 180.02562 * 2 1 3 19 19 O 1.21287 * 119.99643 * 179.97438 * 18 2 1 20 20 C 1.50700 * 120.00245 * 359.97438 * 18 2 1 21 21 C 1.52996 * 109.47086 * 180.02562 * 20 18 2 22 22 H 1.09002 * 110.43481 * 305.69747 * 21 20 18 23 23 C 1.54634 * 110.48648 * 183.16053 * 21 20 18 24 24 C 1.54833 * 101.60169 * 266.07819 * 23 21 20 25 25 N 1.46758 * 105.49729 * 334.56556 * 24 23 21 26 26 C 1.34427 * 111.30009 * 17.03991 * 25 24 23 27 27 O 1.21278 * 124.94194 * 179.62946 * 26 25 24 28 28 H 1.08995 * 109.46852 * 89.99905 * 1 2 3 29 29 H 1.09000 * 109.46736 * 210.00168 * 1 2 3 30 30 H 1.08993 * 109.46974 * 329.99777 * 1 2 3 31 31 H 1.08995 * 109.47424 * 150.00425 * 3 2 1 32 32 H 1.09006 * 109.46868 * 29.99976 * 3 2 1 33 33 H 1.09009 * 109.46730 * 59.99787 * 4 3 2 34 34 H 1.08998 * 109.46846 * 300.00332 * 4 3 2 35 35 H 0.97001 * 119.99790 * 359.97438 * 5 4 3 36 36 H 1.09003 * 109.47112 * 299.99065 * 8 6 5 37 37 H 1.08993 * 109.47916 * 59.99687 * 8 6 5 38 38 H 0.97008 * 120.00004 * 179.97438 * 13 12 10 39 39 H 1.08996 * 109.47045 * 299.99944 * 20 18 2 40 40 H 1.08998 * 109.47351 * 60.00086 * 20 18 2 41 41 H 1.08998 * 110.96739 * 24.23763 * 23 21 20 42 42 H 1.09001 * 110.97350 * 148.00199 * 23 21 20 43 43 H 1.08998 * 110.21829 * 215.56542 * 24 23 21 44 44 H 1.08999 * 110.25071 * 93.58423 * 24 23 21 45 45 H 0.96998 * 124.35304 * 197.05067 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1845 2.9794 -1.4425 6 6 3.5164 3.5659 -2.6098 7 8 3.2135 3.0405 -3.6601 8 6 4.2639 4.8744 -2.6097 9 16 4.5604 5.3999 -4.3162 10 6 5.4224 6.9091 -4.0262 11 1 5.6113 7.2373 -3.0149 12 6 5.8586 7.6760 -5.0977 13 7 5.6279 7.2762 -6.3304 14 14 6.7717 9.2764 -4.7904 15 1 8.2298 9.0067 -4.7104 16 1 6.5034 10.2212 -5.9041 17 1 6.3079 9.8733 -3.5122 18 6 2.1389 -1.1672 -0.0005 19 8 3.3518 -1.1671 -0.0010 20 6 1.3854 -2.4723 -0.0005 21 6 2.3797 -3.6352 -0.0005 22 1 3.0800 -3.5371 -0.8300 23 6 1.6320 -4.9864 -0.0804 24 6 1.5088 -5.3630 1.4164 25 7 2.6186 -4.6752 2.0865 26 6 3.1230 -3.6962 1.3156 27 8 4.0410 -2.9684 1.6293 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5138 31 1 3.1500 1.1384 0.5137 32 1 1.6084 2.0284 0.5139 33 1 1.5000 1.8407 -1.9563 34 1 3.0416 0.9507 -1.9563 35 1 3.4264 3.3998 -0.6025 36 1 3.6724 5.6308 -2.0939 37 1 5.2179 4.7479 -2.0980 38 1 5.9324 7.8124 -7.0793 39 1 0.7591 -2.5302 0.8897 40 1 0.7584 -2.5299 -0.8903 41 1 0.6495 -4.8622 -0.5356 42 1 2.2207 -5.7266 -0.6224 43 1 1.6024 -6.4416 1.5424 44 1 0.5550 -5.0174 1.8151 45 1 2.9462 -4.8984 2.9717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745062713.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:45 Heat of formation + Delta-G solvation = -138.008165 kcal Electronic energy + Delta-G solvation = -26796.219640 eV Core-core repulsion = 22745.622190 eV Total energy + Delta-G solvation = -4050.597449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.72983 -40.78172 -40.25510 -37.38841 -37.13958 -35.60711 -34.59302 -33.84825 -31.93163 -30.25331 -29.25519 -27.69727 -27.53384 -26.63205 -24.01858 -22.62118 -21.96242 -21.16619 -20.12862 -19.77039 -18.46877 -17.96117 -17.85827 -17.62448 -17.19393 -16.89007 -16.78567 -16.69507 -16.18130 -15.88294 -15.56014 -15.24260 -14.87977 -14.67734 -14.64505 -14.43692 -14.27140 -13.90930 -13.64536 -13.60255 -13.41122 -13.19132 -13.17781 -13.08606 -12.91321 -12.89925 -12.61240 -12.38487 -12.13461 -11.83111 -11.74588 -11.15207 -11.11466 -10.87840 -10.61005 -10.29928 -10.21904 -9.98569 -9.72710 -8.68525 -8.35427 -6.14100 1.23269 1.42143 1.43726 1.54635 1.55633 1.62072 1.69115 1.87864 2.26363 2.45219 2.51842 2.98624 3.30647 3.38771 3.48419 3.75048 3.80454 3.81759 3.98834 4.02773 4.20186 4.24431 4.28194 4.34615 4.45648 4.48380 4.50872 4.64823 4.72966 4.75581 4.81550 4.87609 4.95449 5.01015 5.13268 5.23754 5.27646 5.41108 5.53294 6.00773 6.08515 6.19133 6.37240 6.42960 7.05595 7.17444 7.23309 7.38134 8.73932 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.027690 B = 0.001658 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.970784 B =16879.251454 C =17094.470531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.618 5.618 3 C 0.115 3.885 4 C 0.116 3.884 5 N -0.711 5.711 6 C 0.534 3.466 7 O -0.567 6.567 8 C -0.129 4.129 9 S -0.152 6.152 10 C -0.547 4.547 11 H 0.083 0.917 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 1.001 2.999 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.257 1.257 18 C 0.485 3.515 19 O -0.562 6.562 20 C -0.112 4.112 21 C -0.115 4.115 22 H 0.083 0.917 23 C -0.119 4.119 24 C 0.096 3.904 25 N -0.732 5.732 26 C 0.502 3.498 27 O -0.570 6.570 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.418 0.582 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.271 0.729 39 H 0.125 0.875 40 H 0.142 0.858 41 H 0.129 0.871 42 H 0.088 0.912 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 -26.590 21.680 39.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.352 5.352 3 C -0.010 4.010 4 C -0.010 4.010 5 N -0.366 5.366 6 C 0.320 3.680 7 O -0.445 6.445 8 C -0.280 4.280 9 S 0.075 5.925 10 C -0.695 4.695 11 H 0.102 0.898 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.181 1.181 18 C 0.274 3.726 19 O -0.439 6.439 20 C -0.152 4.152 21 C -0.137 4.137 22 H 0.102 0.898 23 C -0.156 4.156 24 C -0.027 4.027 25 N -0.387 5.387 26 C 0.288 3.712 27 O -0.448 6.448 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.255 0.745 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.107 0.893 43 H 0.119 0.881 44 H 0.115 0.885 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.880 -27.070 19.843 38.510 hybrid contribution 1.691 1.692 1.572 2.862 sum -17.189 -25.378 21.414 37.391 Atomic orbital electron populations 1.22197 0.76202 1.05527 1.03426 1.47887 1.08801 1.04672 1.73872 1.21461 0.98904 0.86617 0.93981 1.21590 0.96089 0.84408 0.98869 1.45573 1.58787 1.23914 1.08298 1.20118 0.78458 0.85676 0.83758 1.90686 1.55138 1.65616 1.33043 1.23367 1.03748 0.97443 1.03440 1.85582 1.74519 1.27961 1.04432 1.23212 1.42389 1.07680 0.96233 0.89846 1.26151 0.96532 1.02546 0.93958 1.70190 1.45299 1.40033 0.99241 0.84928 0.78129 0.76225 0.78523 1.19465 1.20121 1.18106 1.21631 0.88151 0.87150 0.75665 1.90864 1.16119 1.87698 1.49192 1.21681 0.97829 0.87814 1.07869 1.21772 0.98334 0.97840 0.95791 0.89827 1.22851 1.03207 0.93070 0.96502 1.22455 0.89498 0.98738 0.91979 1.46400 1.36603 1.35489 1.20230 1.21397 0.82434 0.79394 0.87975 1.90796 1.30927 1.45386 1.77677 0.91484 0.88114 0.89337 0.91272 0.86343 0.91166 0.94799 0.74479 0.86600 0.87427 0.91961 0.85741 0.83986 0.85314 0.89337 0.88089 0.88455 0.74999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 10.29 127.77 1.31 1.69 16 2 N -0.62 -9.91 2.87 -846.75 -2.43 -12.35 16 3 C 0.11 2.15 5.56 86.38 0.48 2.63 16 4 C 0.12 3.01 6.00 86.38 0.52 3.53 16 5 N -0.71 -19.93 5.56 -463.05 -2.57 -22.50 16 6 C 0.53 21.13 7.85 87.66 0.69 21.82 16 7 O -0.57 -27.96 15.86 -3.04 -0.05 -28.00 16 8 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 9 S -0.15 -8.72 20.57 -56.49 -1.16 -9.88 16 10 C -0.55 -32.00 9.50 67.95 0.65 -31.35 16 11 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 12 C 0.01 0.75 5.49 84.86 0.47 1.21 16 13 N -0.91 -56.97 13.22 21.65 0.29 -56.69 16 14 Si 1.00 44.45 29.55 68.60 2.03 46.48 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 17 H -0.26 -10.69 7.11 99.48 0.71 -9.99 16 18 C 0.48 10.29 7.46 87.66 0.65 10.94 16 19 O -0.56 -19.06 13.41 17.54 0.24 -18.82 16 20 C -0.11 -1.07 3.66 29.85 0.11 -0.96 16 21 C -0.11 -1.55 2.54 -10.80 -0.03 -1.58 16 22 H 0.08 1.64 7.96 -2.39 -0.02 1.62 16 23 C -0.12 -0.28 6.74 31.78 0.21 -0.07 16 24 C 0.10 0.12 7.79 86.96 0.68 0.80 16 25 N -0.73 -7.89 6.24 -459.21 -2.87 -10.75 16 26 C 0.50 10.59 7.42 87.90 0.65 11.24 16 27 O -0.57 -19.77 16.03 17.56 0.28 -19.49 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.10 -0.01 6.44 -2.39 -0.02 -0.02 16 30 H 0.09 0.29 7.89 -2.39 -0.02 0.27 16 31 H 0.07 1.65 7.42 -2.39 -0.02 1.63 16 32 H 0.12 1.37 7.89 -2.38 -0.02 1.35 16 33 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.42 8.53 8.47 -92.71 -0.79 7.74 16 36 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 37 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 38 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 39 H 0.12 0.45 7.40 -2.39 -0.02 0.43 16 40 H 0.14 0.37 8.10 -2.39 -0.02 0.35 16 41 H 0.13 -0.53 7.90 -2.39 -0.02 -0.55 16 42 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.10 -0.23 8.14 -2.39 -0.02 -0.25 16 44 H 0.10 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.41 3.77 8.96 -92.71 -0.83 2.94 16 Total: -1.00 -102.68 390.78 -0.01 -102.70 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -0.59 Total: 14.32 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.83 Total: 14.99 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.58 Total: -102.29 kcal Atomic # 8 Polarization: -66.78 SS G_CDS: 0.47 Total: -66.31 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.16 Total: -9.88 kcal Total: -102.68 -0.01 -102.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745062713.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.313 kcal (2) G-P(sol) polarization free energy of solvation -102.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds