Wall clock time and date at job start Wed Apr 1 2020 01:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99997 * 2 1 4 4 C 1.53003 * 109.46704 * 90.00228 * 3 2 1 5 5 N 1.46504 * 109.47046 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00240 * 179.97438 * 5 4 3 7 7 O 1.21346 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.49445 * 119.99983 * 180.02562 * 6 5 4 9 9 O 1.21355 * 120.00200 * 359.97438 * 8 6 5 10 10 N 1.34784 * 119.99977 * 180.02562 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72558 * 10 8 6 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.52998 * 117.49650 * 243.62172 * 12 11 10 14 14 C 1.52995 * 117.50059 * 174.99811 * 12 11 10 15 15 C 1.34778 * 119.99584 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99613 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00185 * 0.02562 * 15 2 1 18 18 S 1.80999 * 109.46925 * 179.97438 * 17 15 2 19 19 C 1.76204 * 99.99802 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99986 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47062 * 59.99943 * 23 21 19 25 25 H 1.48495 * 109.46958 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46813 * 300.00259 * 23 21 19 27 27 H 1.09008 * 109.47246 * 89.99396 * 1 2 3 28 28 H 1.08994 * 109.47532 * 209.99799 * 1 2 3 29 29 H 1.09001 * 109.47102 * 330.00038 * 1 2 3 30 30 H 1.08998 * 109.47473 * 330.00396 * 3 2 1 31 31 H 1.09002 * 109.46901 * 209.99826 * 3 2 1 32 32 H 1.09000 * 109.47521 * 59.99973 * 4 3 2 33 33 H 1.08994 * 109.47262 * 299.99751 * 4 3 2 34 34 H 0.97005 * 119.99919 * 0.02562 * 5 4 3 35 35 H 0.97000 * 119.99339 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 37 37 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 38 38 H 1.09000 * 115.55299 * 29.32287 * 12 11 10 39 39 H 1.09003 * 117.50441 * 359.97438 * 13 12 11 40 40 H 1.08997 * 117.50181 * 145.01905 * 13 12 11 41 41 H 1.09004 * 117.50332 * 214.97326 * 14 12 11 42 42 H 1.09001 * 117.50181 * 0.02562 * 14 12 11 43 43 H 1.09001 * 109.47119 * 299.99452 * 17 15 2 44 44 H 1.08996 * 109.47258 * 59.99621 * 17 15 2 45 45 H 0.96997 * 120.00033 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1855 2.9787 1.4426 6 6 3.5222 3.5625 2.6098 7 8 3.2185 3.0372 3.6607 8 6 4.2694 4.8567 2.6099 9 8 4.5736 5.3818 1.5589 10 7 4.6065 5.4402 3.7771 11 6 5.3443 6.7058 3.7771 12 6 5.5988 7.1478 5.2197 13 6 4.9526 8.4551 5.6824 14 6 6.4612 8.3930 5.4353 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 16 2.5614 -3.8481 -0.0029 19 6 1.4413 -5.2082 -0.0034 20 1 0.3760 -5.0305 -0.0025 21 6 1.9280 -6.5081 -0.0048 22 7 3.2263 -6.7247 -0.0054 23 14 0.7404 -7.9501 -0.0046 24 1 -0.1159 -7.8863 -1.2161 25 1 1.5065 -9.2222 -0.0057 26 1 -0.1133 -7.8879 1.2089 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1383 -0.5138 32 1 3.0416 0.9506 1.9564 33 1 1.5001 1.8406 1.9564 34 1 3.4280 3.3988 0.6026 35 1 4.3637 5.0203 4.6171 36 1 6.2972 6.5709 3.2654 37 1 4.7595 7.4674 3.2612 38 1 5.6856 6.3429 5.9496 39 1 4.3464 9.0006 4.9591 40 1 4.6139 8.5105 6.7170 41 1 7.1151 8.4076 6.3073 42 1 6.8469 8.8977 4.5495 43 1 0.7583 -2.5307 0.8881 44 1 0.7589 -2.5294 -0.8919 45 1 3.5664 -7.6331 -0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745227623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:30 Heat of formation + Delta-G solvation = -76.225631 kcal Electronic energy + Delta-G solvation = -26001.480994 eV Core-core repulsion = 21953.562637 eV Total energy + Delta-G solvation = -4047.918358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.95514 -39.65087 -38.94807 -37.96359 -36.19766 -35.07895 -34.32046 -32.43734 -30.84341 -28.74134 -28.08888 -26.59534 -25.51464 -24.44640 -22.96154 -22.62558 -21.60526 -20.69397 -19.41533 -18.66639 -17.71660 -17.36380 -16.79475 -16.53398 -16.39600 -16.16303 -15.56034 -15.37992 -15.13946 -14.84174 -14.81002 -14.51399 -14.02554 -14.00135 -13.86145 -13.31878 -13.26404 -12.99289 -12.58609 -12.44602 -12.40247 -12.10160 -12.05613 -12.00118 -11.85860 -11.55734 -11.07178 -11.05521 -11.04335 -10.81710 -10.77535 -9.97462 -9.83122 -9.65382 -9.50725 -9.45849 -9.06638 -8.71127 -8.25049 -6.51715 -6.22210 -3.93328 1.11092 1.93341 2.79878 2.90644 2.95691 3.13983 3.23128 3.23856 3.28465 3.40155 3.61673 4.02106 4.14927 4.19449 4.31120 4.40307 4.62031 4.62948 4.65484 5.01405 5.02663 5.04813 5.09725 5.12926 5.14916 5.18721 5.32680 5.36830 5.51819 5.52121 5.54597 5.63781 5.70685 5.73018 5.79709 5.86301 5.90247 6.10193 6.48800 6.59186 7.00324 7.39166 7.40080 7.58462 7.67141 8.34084 8.45314 9.22897 10.85166 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.001549 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.586052 B =18071.101510 C =18537.107526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.107 3.893 4 C 0.100 3.900 5 N -0.694 5.694 6 C 0.507 3.493 7 O -0.517 6.517 8 C 0.510 3.490 9 O -0.520 6.520 10 N -0.699 5.699 11 C 0.149 3.851 12 C -0.175 4.175 13 C -0.176 4.176 14 C -0.168 4.168 15 C 0.533 3.467 16 O -0.511 6.511 17 C -0.150 4.150 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.415 0.585 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.599 30.156 7.231 31.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.359 5.359 3 C -0.017 4.017 4 C -0.024 4.024 5 N -0.348 5.348 6 C 0.287 3.713 7 O -0.393 6.393 8 C 0.290 3.710 9 O -0.395 6.395 10 N -0.352 5.352 11 C 0.026 3.974 12 C -0.193 4.193 13 C -0.213 4.213 14 C -0.206 4.206 15 C 0.321 3.679 16 O -0.384 6.384 17 C -0.301 4.301 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.249 0.751 35 H 0.251 0.749 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.341 29.993 7.215 30.851 hybrid contribution -2.261 -0.921 0.083 2.443 sum -1.919 29.072 7.297 30.035 Atomic orbital electron populations 1.21825 0.79153 1.03381 1.02046 1.47749 1.07010 1.05066 1.76102 1.21437 0.99237 0.86009 0.94999 1.21952 0.97075 0.84484 0.98912 1.45593 1.56450 1.23888 1.08826 1.20001 0.80880 0.85740 0.84674 1.90796 1.53271 1.64265 1.30921 1.20139 0.80608 0.85770 0.84480 1.90778 1.53418 1.64368 1.30975 1.45736 1.56488 1.24013 1.09006 1.21028 0.96748 0.84677 0.94969 1.22458 1.06812 0.93000 0.97052 1.23117 0.95775 0.99581 1.02820 1.22973 0.93885 0.99881 1.03813 1.20445 0.87988 0.84582 0.74879 1.90712 1.13704 1.86702 1.47299 1.23561 1.04621 0.97035 1.04874 1.85416 1.07968 0.93326 1.96724 1.22814 0.94259 0.92190 1.59191 0.90960 1.24987 0.95668 0.98364 0.94487 1.70003 1.11763 1.21795 1.46681 0.86225 0.80186 0.80298 0.78800 1.19928 1.20805 1.19930 0.92407 0.90359 0.91284 0.89914 0.88853 0.89916 0.90670 0.75055 0.74871 0.90341 0.90637 0.86798 0.88404 0.88414 0.88224 0.88284 0.89076 0.89105 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.24 59.85 0.61 1.35 16 2 N -0.62 -8.10 2.87 -181.57 -0.52 -8.63 16 3 C 0.11 1.14 5.52 -4.04 -0.02 1.12 16 4 C 0.10 1.11 6.00 -4.04 -0.02 1.09 16 5 N -0.69 -6.98 5.55 -60.73 -0.34 -7.32 16 6 C 0.51 5.74 7.89 -11.59 -0.09 5.65 16 7 O -0.52 -7.08 16.48 5.50 0.09 -6.99 16 8 C 0.51 5.21 7.89 -11.58 -0.09 5.12 16 9 O -0.52 -6.24 16.48 5.49 0.09 -6.15 16 10 N -0.70 -5.44 5.55 -60.73 -0.34 -5.77 16 11 C 0.15 0.93 5.95 -4.04 -0.02 0.90 16 12 C -0.17 -0.81 5.85 -90.62 -0.53 -1.34 16 13 C -0.18 -0.72 10.18 -26.73 -0.27 -0.99 16 14 C -0.17 -0.66 10.25 -26.73 -0.27 -0.93 16 15 C 0.53 9.76 7.69 -10.99 -0.08 9.67 16 16 O -0.51 -11.31 15.44 5.56 0.09 -11.22 16 17 C -0.15 -2.98 4.71 36.01 0.17 -2.81 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.27 29.55 -169.99 -5.02 16.24 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 28 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 29 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.09 1.13 7.42 -51.93 -0.39 0.75 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.41 3.46 7.94 -40.82 -0.32 3.13 16 35 H 0.41 2.84 7.87 -40.82 -0.32 2.51 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.48 7.88 -51.93 -0.41 0.07 16 38 H 0.11 0.49 8.04 -51.93 -0.42 0.07 16 39 H 0.10 0.38 8.03 -51.93 -0.42 -0.03 16 40 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 1.66 7.40 -51.92 -0.38 1.28 16 44 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 402.59 15.07 6.07 6.07 Total: -1.00 -36.58 402.59 -8.55 -45.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.76 Total: 1.85 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -0.43 Total: 5.99 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.46 Total: -47.06 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: 0.27 Total: -24.37 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.58 -8.55 -45.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745227623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.092 kcal (2) G-P(sol) polarization free energy of solvation -36.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds