Wall clock time and date at job start Wed Apr 1 2020 01:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99997 * 2 1 4 4 C 1.53003 * 109.46704 * 90.00228 * 3 2 1 5 5 N 1.46504 * 109.47046 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00240 * 179.97438 * 5 4 3 7 7 O 1.21346 * 120.00058 * 0.02562 * 6 5 4 8 8 C 1.49445 * 119.99983 * 180.02562 * 6 5 4 9 9 O 1.21355 * 120.00200 * 359.97438 * 8 6 5 10 10 N 1.34784 * 119.99977 * 180.02562 * 8 6 5 11 11 C 1.46493 * 119.99864 * 179.72558 * 10 8 6 12 12 C 1.53001 * 109.47084 * 180.02562 * 11 10 8 13 13 C 1.52998 * 117.49650 * 243.62172 * 12 11 10 14 14 C 1.52995 * 117.50059 * 174.99811 * 12 11 10 15 15 C 1.34778 * 119.99584 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99613 * 179.97438 * 15 2 1 17 17 C 1.50699 * 120.00185 * 0.02562 * 15 2 1 18 18 S 1.80999 * 109.46925 * 179.97438 * 17 15 2 19 19 C 1.76204 * 99.99802 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99986 * 179.97438 * 19 18 17 22 22 N 1.31624 * 119.99760 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99964 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47062 * 59.99943 * 23 21 19 25 25 H 1.48495 * 109.46958 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46813 * 300.00259 * 23 21 19 27 27 H 1.09008 * 109.47246 * 89.99396 * 1 2 3 28 28 H 1.08994 * 109.47532 * 209.99799 * 1 2 3 29 29 H 1.09001 * 109.47102 * 330.00038 * 1 2 3 30 30 H 1.08998 * 109.47473 * 330.00396 * 3 2 1 31 31 H 1.09002 * 109.46901 * 209.99826 * 3 2 1 32 32 H 1.09000 * 109.47521 * 59.99973 * 4 3 2 33 33 H 1.08994 * 109.47262 * 299.99751 * 4 3 2 34 34 H 0.97005 * 119.99919 * 0.02562 * 5 4 3 35 35 H 0.97000 * 119.99339 * 359.97438 * 10 8 6 36 36 H 1.09007 * 109.47196 * 299.99538 * 11 10 8 37 37 H 1.09006 * 109.47678 * 59.99732 * 11 10 8 38 38 H 1.09000 * 115.55299 * 29.32287 * 12 11 10 39 39 H 1.09003 * 117.50441 * 359.97438 * 13 12 11 40 40 H 1.08997 * 117.50181 * 145.01905 * 13 12 11 41 41 H 1.09004 * 117.50332 * 214.97326 * 14 12 11 42 42 H 1.09001 * 117.50181 * 0.02562 * 14 12 11 43 43 H 1.09001 * 109.47119 * 299.99452 * 17 15 2 44 44 H 1.08996 * 109.47258 * 59.99621 * 17 15 2 45 45 H 0.96997 * 120.00033 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4426 5 7 3.1855 2.9787 1.4426 6 6 3.5222 3.5625 2.6098 7 8 3.2185 3.0372 3.6607 8 6 4.2694 4.8567 2.6099 9 8 4.5736 5.3818 1.5589 10 7 4.6065 5.4402 3.7771 11 6 5.3443 6.7058 3.7771 12 6 5.5988 7.1478 5.2197 13 6 4.9526 8.4551 5.6824 14 6 6.4612 8.3930 5.4353 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1673 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 16 2.5614 -3.8481 -0.0029 19 6 1.4413 -5.2082 -0.0034 20 1 0.3760 -5.0305 -0.0025 21 6 1.9280 -6.5081 -0.0048 22 7 3.2263 -6.7247 -0.0054 23 14 0.7404 -7.9501 -0.0046 24 1 -0.1159 -7.8863 -1.2161 25 1 1.5065 -9.2222 -0.0057 26 1 -0.1133 -7.8879 1.2089 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6084 2.0284 -0.5137 31 1 3.1499 1.1383 -0.5138 32 1 3.0416 0.9506 1.9564 33 1 1.5001 1.8406 1.9564 34 1 3.4280 3.3988 0.6026 35 1 4.3637 5.0203 4.6171 36 1 6.2972 6.5709 3.2654 37 1 4.7595 7.4674 3.2612 38 1 5.6856 6.3429 5.9496 39 1 4.3464 9.0006 4.9591 40 1 4.6139 8.5105 6.7170 41 1 7.1151 8.4076 6.3073 42 1 6.8469 8.8977 4.5495 43 1 0.7583 -2.5307 0.8881 44 1 0.7589 -2.5294 -0.8919 45 1 3.5664 -7.6331 -0.0068 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745227623.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:29 Heat of formation + Delta-G solvation = -104.141182 kcal Electronic energy + Delta-G solvation = -26002.691503 eV Core-core repulsion = 21953.562637 eV Total energy + Delta-G solvation = -4049.128867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81685 -40.90811 -39.79952 -38.46527 -37.30169 -36.02501 -35.11718 -34.57917 -32.02967 -29.91318 -28.82675 -27.68911 -27.46307 -25.36277 -23.57871 -23.23496 -22.10052 -21.55125 -20.63972 -19.67523 -19.40231 -18.24797 -18.03089 -17.35866 -17.25944 -17.07522 -16.87713 -16.77135 -16.31827 -16.02017 -15.73430 -15.58539 -15.11243 -14.83145 -14.71216 -14.46985 -14.32766 -14.27767 -14.02621 -13.56837 -13.25454 -13.16661 -13.06906 -12.94093 -12.85300 -12.66036 -12.45117 -12.43288 -12.37418 -11.73287 -11.44355 -11.22425 -11.12130 -10.99057 -10.79625 -10.44122 -10.27768 -10.26526 -9.80915 -8.67083 -8.33840 -6.12397 0.24365 1.08066 1.29012 1.44617 1.47329 1.54734 1.56868 2.04318 2.06088 2.28207 2.59550 2.88131 3.00403 3.26426 3.36147 3.62152 3.68349 3.74274 3.96252 3.99893 4.05941 4.21570 4.22049 4.32299 4.34884 4.49265 4.56881 4.65228 4.67792 4.69288 4.81180 4.84486 4.97697 5.00622 5.01099 5.04030 5.25928 5.26839 5.42098 5.49755 5.80277 6.18948 6.21068 6.23813 6.62964 6.84022 7.07272 7.09890 8.75143 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.001549 C = 0.001510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.586052 B =18071.101510 C =18537.107526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.608 5.608 3 C 0.109 3.891 4 C 0.109 3.891 5 N -0.684 5.684 6 C 0.506 3.494 7 O -0.545 6.545 8 C 0.512 3.488 9 O -0.540 6.540 10 N -0.687 5.687 11 C 0.149 3.851 12 C -0.180 4.180 13 C -0.175 4.175 14 C -0.165 4.165 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.156 6.156 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.423 0.577 35 H 0.420 0.580 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.102 0.898 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.147 31.703 7.324 32.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.014 4.014 4 C -0.015 4.015 5 N -0.338 5.338 6 C 0.287 3.713 7 O -0.422 6.422 8 C 0.292 3.708 9 O -0.418 6.418 10 N -0.340 5.340 11 C 0.026 3.974 12 C -0.199 4.199 13 C -0.212 4.212 14 C -0.203 4.203 15 C 0.318 3.682 16 O -0.439 6.439 17 C -0.275 4.275 18 S 0.071 5.929 19 C -0.694 4.694 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.185 1.185 25 H -0.205 1.205 26 H -0.187 1.187 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.148 0.852 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.107 0.893 34 H 0.261 0.739 35 H 0.257 0.743 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.120 0.880 43 H 0.127 0.873 44 H 0.129 0.871 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.250 31.605 7.310 32.517 hybrid contribution -1.497 -1.224 0.078 1.935 sum -3.747 30.381 7.388 31.490 Atomic orbital electron populations 1.22181 0.76273 1.05003 1.03832 1.47707 1.08715 1.04127 1.73679 1.21612 0.99287 0.85700 0.94831 1.21767 0.96938 0.83895 0.98937 1.45514 1.55843 1.23301 1.09106 1.20244 0.80572 0.86020 0.84479 1.90783 1.54489 1.65091 1.31841 1.19936 0.80616 0.85353 0.84865 1.90770 1.54549 1.64782 1.31667 1.45785 1.55471 1.24181 1.08526 1.21122 0.96257 0.83812 0.96193 1.22408 1.07916 0.93507 0.96029 1.23184 0.95967 0.98845 1.03213 1.23060 0.93984 0.98967 1.04250 1.20221 0.87304 0.85620 0.75071 1.90696 1.15692 1.87452 1.50091 1.23385 1.02727 0.94818 1.06600 1.85609 1.12752 0.97447 1.97051 1.23166 0.94641 0.92597 1.58971 0.89791 1.26129 0.97563 1.01698 0.93703 1.70179 1.14171 1.22504 1.47960 0.85007 0.77611 0.75863 0.79539 1.18524 1.20507 1.18663 0.90468 0.90670 0.87890 0.85241 0.90582 0.93703 0.89345 0.73896 0.74262 0.90747 0.90532 0.86423 0.88267 0.87789 0.87484 0.87953 0.87277 0.87138 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.24 127.77 1.31 2.33 16 2 N -0.61 -14.58 2.87 -846.75 -2.43 -17.01 16 3 C 0.11 2.10 5.52 86.38 0.48 2.58 16 4 C 0.11 2.32 6.00 86.38 0.52 2.84 16 5 N -0.68 -13.14 5.55 -464.42 -2.58 -15.72 16 6 C 0.51 11.24 7.89 87.27 0.69 11.92 16 7 O -0.54 -14.85 16.48 -3.23 -0.05 -14.91 16 8 C 0.51 10.21 7.89 87.27 0.69 10.90 16 9 O -0.54 -12.63 16.48 -3.26 -0.05 -12.68 16 10 N -0.69 -10.25 5.55 -464.40 -2.58 -12.83 16 11 C 0.15 1.74 5.95 86.38 0.51 2.25 16 12 C -0.18 -1.47 5.85 -10.80 -0.06 -1.53 16 13 C -0.18 -1.18 10.18 30.59 0.31 -0.87 16 14 C -0.17 -1.06 10.25 30.59 0.31 -0.75 16 15 C 0.53 19.30 7.69 87.66 0.67 19.98 16 16 O -0.56 -25.76 15.44 -3.03 -0.05 -25.81 16 17 C -0.12 -4.86 4.71 71.24 0.34 -4.53 16 18 S -0.16 -8.66 20.57 -56.49 -1.16 -9.82 16 19 C -0.55 -31.05 9.50 67.96 0.65 -30.40 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 23 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 24 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 27 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.07 1.21 6.44 -2.39 -0.02 1.19 16 29 H 0.10 0.90 8.07 -2.39 -0.02 0.88 16 30 H 0.13 1.36 8.07 -2.39 -0.02 1.34 16 31 H 0.08 1.80 7.42 -2.39 -0.02 1.78 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.42 6.53 7.94 -92.70 -0.74 5.80 16 35 H 0.42 5.49 7.87 -92.71 -0.73 4.76 16 36 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 0.90 7.88 -2.38 -0.02 0.88 16 38 H 0.12 0.88 8.04 -2.39 -0.02 0.86 16 39 H 0.10 0.64 8.03 -2.39 -0.02 0.62 16 40 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.11 3.85 7.40 -2.39 -0.02 3.84 16 44 H 0.11 3.87 8.11 -2.40 -0.02 3.85 16 45 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -83.04 402.59 -0.15 -83.19 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.44 Total: 20.12 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.88 Total: 15.96 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -7.30 Total: -101.45 kcal Atomic # 8 Polarization: -53.25 SS G_CDS: -0.15 Total: -53.40 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -83.04 -0.15 -83.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745227623.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.950 kcal (2) G-P(sol) polarization free energy of solvation -83.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds