Wall clock time and date at job start Wed Apr 1 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47018 * 111.00395 * 2 1 4 4 C 1.53094 * 109.26169 * 182.38894 * 3 2 1 5 5 O 1.43007 * 109.25892 * 303.15457 * 4 3 2 6 6 C 1.43013 * 113.74196 * 58.66739 * 5 4 3 7 7 H 1.09000 * 109.50805 * 61.30637 * 6 5 4 8 8 C 1.50705 * 109.51068 * 181.39719 * 6 5 4 9 9 O 1.21279 * 119.99622 * 4.99575 * 8 6 5 10 10 N 1.34771 * 120.00012 * 185.00219 * 8 6 5 11 11 C 1.47585 * 134.49247 * 179.97438 * 10 8 6 12 12 C 1.53943 * 86.11726 * 155.35760 * 11 10 8 13 13 N 1.46502 * 113.73977 * 137.95449 * 12 11 10 14 14 C 1.34776 * 119.99975 * 154.99884 * 13 12 11 15 15 O 1.21278 * 119.99992 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99821 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.46970 * 180.02562 * 16 14 13 18 18 C 1.76199 * 100.00052 * 179.97438 * 17 16 14 19 19 H 1.07990 * 119.99886 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99752 * 180.02562 * 18 17 16 21 21 N 1.31633 * 120.00370 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99801 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46845 * 269.99984 * 22 20 18 24 24 H 1.48503 * 109.47399 * 29.99474 * 22 20 18 25 25 H 1.48498 * 109.47295 * 150.00081 * 22 20 18 26 26 C 1.47582 * 134.49489 * 359.97438 * 10 8 6 27 27 C 1.47020 * 110.99902 * 123.63482 * 2 1 3 28 28 H 1.09004 * 109.46640 * 63.95266 * 1 2 3 29 29 H 1.08995 * 109.47123 * 183.95342 * 1 2 3 30 30 H 1.08999 * 109.46969 * 303.95526 * 1 2 3 31 31 H 1.09003 * 109.50684 * 62.45269 * 3 2 1 32 32 H 1.09003 * 109.54012 * 302.34828 * 3 2 1 33 33 H 1.08995 * 109.50535 * 183.21644 * 4 3 2 34 34 H 1.09005 * 109.50313 * 63.08392 * 4 3 2 35 35 H 1.09004 * 113.76845 * 41.05525 * 11 10 8 36 36 H 1.08995 * 113.77321 * 269.66427 * 11 10 8 37 37 H 1.08997 * 113.73978 * 269.15599 * 12 11 10 38 38 H 0.97006 * 119.99942 * 334.99982 * 13 12 11 39 39 H 1.08993 * 109.47027 * 60.00415 * 16 14 13 40 40 H 1.09001 * 109.47164 * 300.00041 * 16 14 13 41 41 H 0.97000 * 119.99520 * 359.97438 * 21 20 18 42 42 H 1.09002 * 113.76686 * 90.34400 * 26 10 8 43 43 H 1.08995 * 113.76709 * 318.94353 * 26 10 8 44 44 H 1.09000 * 109.50367 * 57.67225 * 27 2 1 45 45 H 1.08998 * 109.49996 * 297.53989 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3264 -0.0602 5 8 4.0175 0.5574 1.0403 6 6 3.5249 -0.7849 1.0710 7 1 3.8391 -1.3086 0.1681 8 6 4.0740 -1.4950 2.2815 9 8 4.7402 -0.8859 3.0915 10 7 3.8249 -2.8069 2.4639 11 6 4.1894 -3.7949 3.4979 12 6 2.9323 -4.5657 3.0557 13 7 3.1309 -6.0142 2.9627 14 6 2.0796 -6.8480 3.0893 15 8 0.9691 -6.3991 3.2796 16 6 2.2840 -8.3381 2.9942 17 16 0.6950 -9.1794 3.2025 18 6 1.2144 -10.8562 3.0503 19 1 2.2558 -11.0855 2.8797 20 6 0.2849 -11.8823 3.1486 21 7 -0.9846 -11.6028 3.3560 22 14 0.8356 -13.6600 2.9879 23 1 0.7698 -14.0717 1.5626 24 1 2.2315 -13.7920 3.4772 25 1 -0.0565 -14.5296 3.7960 26 6 3.0781 -3.8325 1.7099 27 6 1.9958 -0.7603 1.1428 28 1 -0.3633 0.4513 -0.9233 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3633 0.5740 0.8524 31 1 1.6828 1.8826 0.9110 32 1 1.6135 1.9099 -0.8678 33 1 3.9222 2.3398 -0.0029 34 1 3.8386 0.8643 -0.9964 35 1 4.1322 -3.4077 4.5152 36 1 5.1219 -4.3210 3.2936 37 1 2.0338 -4.2946 3.6100 38 1 4.0191 -6.3732 2.8102 39 1 2.9717 -8.6610 3.7757 40 1 2.7008 -8.5861 2.0181 41 1 -1.2704 -10.6797 3.4406 42 1 3.6842 -4.3696 0.9804 43 1 2.1336 -3.4752 1.2997 44 1 1.6133 -1.7804 1.1087 45 1 1.6827 -0.2842 2.0719 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745818602.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:43 Heat of formation + Delta-G solvation = -64.519202 kcal Electronic energy + Delta-G solvation = -27256.158599 eV Core-core repulsion = 23208.747870 eV Total energy + Delta-G solvation = -4047.410729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16317 -40.06834 -38.97314 -37.77716 -36.11989 -33.94247 -32.58311 -32.27170 -30.23238 -29.34579 -28.19046 -26.73061 -25.27150 -24.87387 -24.60603 -22.20588 -21.10672 -20.73763 -19.56246 -18.40104 -17.82399 -17.21311 -17.02908 -16.73311 -16.42048 -16.00396 -15.77738 -15.43918 -15.19038 -14.97368 -14.70435 -14.20075 -14.10786 -13.89442 -13.66795 -13.46410 -13.36894 -13.21832 -12.83901 -12.56951 -12.47441 -12.43166 -12.28919 -12.09168 -11.95932 -11.89223 -11.54290 -11.26000 -10.94872 -10.23784 -10.22789 -10.11406 -9.69613 -9.62562 -9.27714 -9.14247 -9.05475 -8.99563 -8.29386 -6.73962 -6.67354 -4.06181 1.99923 2.14585 2.76335 2.82464 3.21354 3.29510 3.32765 3.35866 3.47008 3.53454 3.95102 4.08168 4.19676 4.23948 4.37966 4.43533 4.50946 4.58316 4.70960 4.75396 4.82058 4.93263 4.95025 5.00170 5.02739 5.11248 5.17319 5.18433 5.22563 5.26417 5.32208 5.35401 5.38791 5.43752 5.66332 5.69828 5.92491 6.29641 6.30214 6.34224 6.55216 7.15758 7.40607 7.72919 7.87143 8.31362 8.44920 9.21360 10.76561 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021895 B = 0.001891 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.532691 B =14800.859076 C =15654.391265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.540 5.540 3 C 0.013 3.987 4 C 0.063 3.937 5 O -0.357 6.357 6 C 0.085 3.915 7 H 0.094 0.906 8 C 0.549 3.451 9 O -0.515 6.515 10 N -0.642 5.642 11 C 0.104 3.896 12 C 0.119 3.881 13 N -0.727 5.727 14 C 0.535 3.465 15 O -0.513 6.513 16 C -0.132 4.132 17 S -0.115 6.115 18 C -0.608 4.608 19 H 0.067 0.933 20 C 0.035 3.965 21 N -0.884 5.884 22 Si 1.087 2.913 23 H -0.284 1.284 24 H -0.287 1.287 25 H -0.280 1.280 26 C 0.081 3.919 27 C 0.026 3.974 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.403 0.597 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.278 0.722 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.925 23.479 -7.994 26.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.265 5.265 3 C -0.115 4.115 4 C -0.014 4.014 5 O -0.275 6.275 6 C 0.024 3.976 7 H 0.111 0.889 8 C 0.336 3.664 9 O -0.389 6.389 10 N -0.381 5.381 11 C -0.019 4.019 12 C 0.012 3.988 13 N -0.381 5.381 14 C 0.321 3.679 15 O -0.386 6.386 16 C -0.283 4.283 17 S 0.111 5.889 18 C -0.756 4.756 19 H 0.085 0.915 20 C -0.175 4.175 21 N -0.518 5.518 22 Si 0.913 3.087 23 H -0.210 1.210 24 H -0.213 1.213 25 H -0.205 1.205 26 C -0.043 4.043 27 C -0.103 4.103 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.148 0.852 38 H 0.238 0.762 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.185 23.097 -7.523 25.633 hybrid contribution 1.972 1.104 0.019 2.260 sum 10.156 24.202 -7.504 27.298 Atomic orbital electron populations 1.22423 0.85948 1.02768 1.01345 1.62227 1.08947 1.13635 1.41649 1.22878 0.96532 0.89881 1.02247 1.22774 0.92242 0.96624 0.89770 1.88109 1.69282 1.21574 1.48556 1.21809 0.93245 0.85607 0.96985 0.88878 1.19654 0.80037 0.80065 0.86598 1.90749 1.38452 1.64844 1.44810 1.49587 1.54435 1.06500 1.27534 1.23557 0.97879 0.86407 0.94085 1.22906 0.99741 0.80139 0.96048 1.45887 1.11370 1.05015 1.75872 1.20378 0.84179 0.88402 0.74906 1.90715 1.23787 1.77847 1.46264 1.23326 1.06419 0.93131 1.05451 1.84838 1.05701 1.03324 1.95065 1.23719 0.98926 0.90925 1.62029 0.91505 1.26063 0.93216 1.05187 0.93070 1.70780 1.15575 1.23089 1.42326 0.83288 0.75114 0.73228 0.77082 1.21034 1.21274 1.20498 1.23992 0.96808 0.86600 0.96892 1.22752 0.93734 1.00591 0.93194 0.90711 0.90673 0.95139 0.93524 0.89088 0.87617 0.91841 0.88892 0.88961 0.85240 0.76176 0.88731 0.88734 0.90965 0.88660 0.89042 0.88595 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.63 60.06 0.58 0.73 16 2 N -0.54 -4.19 4.99 -242.59 -1.21 -5.40 16 3 C 0.01 0.09 5.66 -3.71 -0.02 0.07 16 4 C 0.06 0.45 7.01 37.21 0.26 0.71 16 5 O -0.36 -3.99 10.01 -55.06 -0.55 -4.54 16 6 C 0.09 0.83 3.00 -27.83 -0.08 0.75 16 7 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 8 C 0.55 6.51 7.41 -10.99 -0.08 6.42 16 9 O -0.51 -8.25 17.24 -14.27 -0.25 -8.50 16 10 N -0.64 -5.99 3.59 -178.53 -0.64 -6.63 16 11 C 0.10 0.84 8.59 -2.97 -0.03 0.82 16 12 C 0.12 1.09 4.43 -70.14 -0.31 0.78 16 13 N -0.73 -7.50 5.36 -55.34 -0.30 -7.80 16 14 C 0.54 8.56 7.85 -10.98 -0.09 8.48 16 15 O -0.51 -10.27 15.46 5.56 0.09 -10.18 16 16 C -0.13 -2.41 6.16 36.01 0.22 -2.19 16 17 S -0.12 -2.96 19.60 -107.50 -2.11 -5.06 16 18 C -0.61 -16.91 9.50 30.94 0.29 -16.62 16 19 H 0.07 1.78 7.80 -52.49 -0.41 1.37 16 20 C 0.04 1.00 5.49 -17.43 -0.10 0.90 16 21 N -0.88 -26.87 13.67 55.49 0.76 -26.11 16 22 Si 1.09 24.34 29.92 -169.99 -5.09 19.25 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 C 0.08 0.62 8.11 -2.97 -0.02 0.60 16 27 C 0.03 0.22 4.83 -3.71 -0.02 0.20 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.13 1.43 7.46 -51.93 -0.39 1.04 16 38 H 0.40 2.95 8.73 -40.82 -0.36 2.59 16 39 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 40 H 0.09 1.58 8.14 -51.91 -0.42 1.15 16 41 H 0.28 8.61 7.12 -40.82 -0.29 8.32 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 0.66 6.01 -51.93 -0.31 0.35 16 44 H 0.10 0.74 5.65 -51.93 -0.29 0.45 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 385.50 15.07 5.81 5.81 Total: -1.00 -37.55 385.50 -9.63 -47.19 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.76 Total: 0.33 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 0.61 Total: 1.65 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -1.39 Total: -45.94 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.71 Total: -23.22 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.09 Total: 19.25 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.11 Total: -5.06 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.55 -9.63 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745818602.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.333 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds